Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 0.0e+00 1111.3 533 100.0
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 3.7e-291 1004.2 629 79.0
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 1.6e-286 988.8 629 77.3
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 4.7e-286 987.3 629 77.1
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 6.9e-277 956.8 629 75.2
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 2.0e-276 955.3 629 75.0
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 4.3e-263 911.0 440 98.0
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 4.5e-236 821.2 627 62.8
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 1.1e-234 816.6 591 65.7
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 1.9e-234 815.8 627 62.5
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 4.2e-234 814.7 627 63.0
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 2.1e-233 812.4 629 62.2
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 3.6e-233 811.6 623 62.4
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 1.4e-232 809.7 626 62.6
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 3.9e-232 808.1 627 62.2
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 6.7e-232 807.4 627 62.5
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 1.5e-231 806.2 625 62.1
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 2.2e-230 802.4 640 60.0
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 3.7e-230 801.6 628 61.1
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 4.8e-230 801.2 627 60.9
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 3.1e-229 798.5 627 61.4
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 5.3e-229 797.7 625 62.6
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 5.3e-229 797.7 623 62.0
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 2.6e-228 795.4 625 62.1
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 5.9e-228 794.3 627 60.8
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 1.0e-227 793.5 625 61.4
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 1.3e-227 793.1 627 60.8
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 1.7e-227 792.7 625 62.1
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 2.5e-226 788.9 625 61.8
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 2.5e-226 788.9 625 61.4
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 3.2e-226 788.5 628 61.0
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 7.2e-226 787.3 631 60.9
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.2e-225 786.6 625 61.0
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 1.6e-225 786.2 628 60.7
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 2.1e-225 785.8 628 60.0
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 2.7e-225 785.4 639 59.6
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 3.6e-225 785.0 628 60.2
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 3.6e-225 785.0 625 61.0
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 3.6e-225 785.0 629 61.8
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 1.0e-224 783.5 628 60.7
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 1.4e-224 783.1 629 61.2
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.8e-224 782.7 633 60.5
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 6.7e-224 780.8 629 60.7
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 6.7e-224 780.8 625 59.5
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 3.3e-223 778.5 629 60.3
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 7.4e-223 777.3 629 61.0
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 1.7e-222 776.2 624 61.5
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 2.2e-222 775.8 629 60.1
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 2.8e-222 775.4 629 60.1
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 8.2e-222 773.9 625 60.5
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 2.4e-221 772.3 628 59.6
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 7.0e-221 770.8 628 59.6
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 5.9e-220 767.7 629 59.6
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 1.0e-219 766.9 588 62.8
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 1.0e-219 766.9 631 59.9
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 1.3e-219 766.5 624 60.3
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 2.2e-219 765.8 626 59.4
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 8.5e-219 763.8 626 59.9
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 1.9e-218 762.7 629 59.0
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 3.2e-218 761.9 625 58.9
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 4.2e-218 761.5 630 59.5
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 5.5e-218 761.1 663 57.2
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 1.2e-217 760.0 626 59.3
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 1.6e-217 759.6 627 58.9
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 2.1e-217 759.2 626 58.9
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 2.7e-217 758.8 626 59.6
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 6.1e-217 757.7 626 58.8
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 6.1e-217 757.7 629 59.0
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 1.4e-216 756.5 627 58.9
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 1.8e-216 756.1 627 58.5
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 2.3e-216 755.7 630 58.6
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 4.0e-216 755.0 745 52.2
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 6.7e-216 754.2 630 58.4
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 6.7e-216 754.2 625 58.2
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 1.3e-214 750.0 630 58.1
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 1.7e-214 749.6 625 58.6
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 4.8e-214 748.0 656 55.9
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 6.3e-214 747.7 631 58.8
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 1.1e-213 746.9 626 58.5
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 7.0e-213 744.2 631 58.5
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 5.9e-212 741.1 643 57.2
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 5.9e-212 741.1 629 57.6
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 3.8e-211 738.4 625 57.9
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 9.4e-210 733.8 598 59.5
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 1.6e-209 733.0 644 56.2
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 1.6e-209 733.0 631 57.5
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 2.1e-209 732.6 665 55.0
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 2.7e-209 732.3 584 61.5
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 6.8e-208 727.6 629 56.8
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 1.2e-207 726.9 627 57.3
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 8.3e-206 720.7 586 60.1
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 7.0e-205 717.6 615 56.4
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 3.5e-204 715.3 625 55.7
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 1.5e-202 709.9 626 54.6
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 1.2e-201 706.8 627 54.9
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 2.1e-201 706.1 626 56.1
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 2.8e-201 705.7 626 55.4
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 4.7e-201 704.9 626 55.3
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 8.9e-200 700.7 626 55.0
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 2.0e-199 699.5 626 54.6
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 5.7e-199 698.0 626 54.3
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 1.7e-198 696.4 628 54.3
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 3.7e-198 695.3 628 55.6
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 6.3e-198 694.5 626 54.2
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 4.1e-197 691.8 610 56.4
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 1.0e-195 687.2 657 52.5
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 1.3e-195 686.8 629 53.9
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 5.0e-195 684.9 628 53.5
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 3.3e-194 682.2 609 55.2
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 1.8e-192 676.4 437 70.9
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 1.6e-188 663.3 627 53.1
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 2.0e-188 662.9 627 53.9
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 4.6e-188 661.8 635 51.7
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 9.5e-186 654.1 432 69.2
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 4.7e-185 651.7 625 52.5
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.4e-184 650.2 659 51.9
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 1.2e-183 647.1 688 49.9
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 6.0e-180 634.8 582 54.6
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 6.8e-176 621.3 627 49.8
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 4.4e-175 618.6 664 50.8
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 4.9e-174 615.1 430 66.5
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 1.4e-173 613.6 638 50.5
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 5.1e-171 605.1 538 56.7
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 9.3e-157 557.8 638 47.0
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 1.4e-152 543.9 653 45.0
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 1.8e-152 543.5 622 46.0
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 1.3e-150 537.3 636 44.7
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 1.8e-147 526.9 428 56.8
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 9.0e-144 514.6 625 44.2
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 6.7e-139 498.4 645 43.6
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 7.9e-132 474.9 324 67.0
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 1.3e-131 474.2 423 56.7
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 3.2e-125 453.0 601 41.9
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 1.5e-122 444.1 475 47.4
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 8.2e-121 438.3 271 74.2
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 1.8e-115 420.6 522 43.5
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 1.1e-112 411.4 571 41.9
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 1.6e-103 380.9 373 53.4
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 2.6e-98 363.6 340 54.1
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 6.5e-94 349.0 242 67.8
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 2.3e-83 313.9 305 54.1
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 1.1e-80 305.1 428 39.3
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 9.8e-74 282.0 456 39.3
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 3.3e-69 266.9 304 48.7
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 3.4e-66 256.9 202 59.9
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 1.7e-54 218.0 282 42.9
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 3.9e-54 216.9 140 69.3
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 3.2e-48 197.2 104 82.7
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 8.4e-41 172.6 193 46.6
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 8.4e-41 172.6 100 75.0
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 1.6e-36 158.3 88 81.8
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 1.6e-36 158.3 110 69.1
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 5.5e-32 143.3 71 97.2
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 1.1e-29 135.6 97 67.0
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 1.0e-25 122.5 98 59.2
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.9e-24 118.2 105 58.1
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 1.9e-21 108.2 97 54.6
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 4.3e-21 107.1 97 56.7
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 2.1e-20 104.8 95 56.8
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 8.2e-20 102.8 84 56.0
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 1.8e-19 101.7 69 65.2
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.1e-16 92.4 77 55.8
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 2.1e-15 88.2 59 66.1
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 1.8e-14 85.1 45 82.2
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 2.3e-14 84.7 44 81.8
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 2.5e-13 81.3 88 46.6
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 2.5e-13 81.3 41 85.4
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 2.8e-12 77.8 56 58.9
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 3.7e-12 77.4 55 60.0
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 1.2e-10 72.4 49 69.4


User provided reference genes

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