Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005176g0080 Nicotiana tabacum HOM05D000776 ORTHO05D027426 1.3e-32 142.5 75 100.0
Nitab4.5_0001895g0050 Nicotiana tabacum HOM05D000776 ORTHO05D027426 1.4e-29 132.5 75 93.3
Nitab4.5_0000142g0160 Nicotiana tabacum HOM05D000776 ORTHO05D027426 7.0e-18 93.6 75 66.7
Nitab4.5_0001219g0050 Nicotiana tabacum HOM05D000776 ORTHO05D002281 9.4e-15 83.2 51 82.4
Nitab4.5_0006230g0010 Nicotiana tabacum HOM05D000776 ORTHO05D002281 9.4e-15 83.2 51 82.4
Solyc02g069580.3 Solanum lycopersicum HOM05D000776 ORTHO05D002281 8.0e-14 80.1 52 75.0
Sopen02g018710 Solanum pennellii HOM05D000776 ORTHO05D002281 8.0e-14 80.1 52 75.0
PGSC0003DMG401021138 Solanum tuberosum HOM05D000776 ORTHO05D002281 8.0e-14 80.1 52 75.0
Peaxi162Scf00267g01019 Petunia axillaris HOM05D000776 ORTHO05D002281 1.5e-12 75.9 49 73.5
Cpa.g.sc285.6 Carica papaya HOM05D000776 ORTHO05D002281 2.6e-12 75.1 51 68.6
Nitab4.5_0003301g0020 Nicotiana tabacum HOM05D000776 ORTHO05D002281 7.5e-12 73.6 40 85.0
AL1G44680 Arabidopsis lyrata HOM05D000776 ORTHO05D002281 9.7e-12 73.2 48 70.8
AT1G30620 Arabidopsis thaliana HOM05D000776 ORTHO05D002281 9.7e-12 73.2 48 70.8
CARHR030100 Cardamine hirsuta HOM05D000776 ORTHO05D002281 9.7e-12 73.2 48 70.8
Thhalv10007740m.g Eutrema salsugineum HOM05D000776 ORTHO05D002281 9.7e-12 73.2 48 70.8
Lj1A1156G45 Lonicera japonica HOM05D000776 ORTHO05D002281 9.7e-12 73.2 51 66.7
Sp1g26520 Schrenkiella parvula HOM05D000776 ORTHO05D002281 9.7e-12 73.2 48 70.8
Nitab4.5_0000265g0070 Nicotiana tabacum HOM05D000776 ORTHO05D002281 1.3e-11 72.8 41 82.9
Oeu063143.1 Olea europaea HOM05D000776 ORTHO05D002281 1.3e-11 72.8 64 57.8
Prupe.4G101700 Prunus persica HOM05D000776 ORTHO05D002281 1.3e-11 72.8 51 64.7
SalBow8G3389 Salvia bowleyana HOM05D000776 ORTHO05D002281 1.3e-11 72.8 54 64.8
TWI63G0590 Tripterygium wilfordii HOM05D000776 ORTHO05D002281 1.7e-11 72.4 58 65.5
MSTRG.7570 Avicennia marina HOM05D000776 ORTHO05D002281 2.2e-11 72.0 46 69.6
QL05p064849 Quercus lobata HOM05D000776 ORTHO05D002281 2.8e-11 71.6 51 68.6
Manes.06G054100 Manihot esculenta HOM05D000776 ORTHO05D002281 3.7e-11 71.2 49 67.3
Lj2C337T4 Lonicera japonica HOM05D000776 ORTHO05D002281 6.3e-11 70.5 51 66.7
SGA_v2.0_scaffold223G42889 Striga asiatica HOM05D000776 ORTHO05D002281 6.3e-11 70.5 54 61.1
Thecc.06G007800 Theobroma cacao HOM05D000776 ORTHO05D002281 6.3e-11 70.5 49 67.3
CSS0038457 Camellia sinensis var. sinensis HOM05D000776 ORTHO05D002281 8.3e-11 70.1 60 61.7
DCAR_000830 Daucus carota HOM05D000776 ORTHO05D002281 8.3e-11 70.1 42 73.8
Gohir.A06G181600 Gossypium hirsutum HOM05D000776 ORTHO05D002281 8.3e-11 70.1 51 64.7
Gohir.D06G188300 Gossypium hirsutum HOM05D000776 ORTHO05D002281 8.3e-11 70.1 51 64.7
Gorai.010G220700 Gossypium raimondii HOM05D000776 ORTHO05D002281 8.3e-11 70.1 51 64.7
Sopen02g009550 Solanum pennellii HOM05D000776 ORTHO05D002281 8.3e-11 70.1 42 73.8
THA.LOC104812693 Tarenaya hassleriana HOM05D000776 ORTHO05D002281 8.3e-11 70.1 43 74.4
BcaB07g32702 Brassica carinata HOM05D000776 ORTHO05D002281 1.1e-10 69.7 60 63.3
PGSC0003DMG400031399 Solanum tuberosum HOM05D000776 ORTHO05D002281 1.1e-10 69.7 41 75.6
BcaC05g27086 Brassica carinata HOM05D000776 ORTHO05D002281 1.4e-10 69.3 60 61.7
C05p29680 Brassica napus HOM05D000776 ORTHO05D002281 1.4e-10 69.3 60 61.7
BolC5t31697H Brassica oleracea HOM05D000776 ORTHO05D002281 1.4e-10 69.3 60 61.7
Migut.M01942 Erythranthe guttata HOM05D000776 ORTHO05D002281 1.4e-10 69.3 54 61.1
MD05G1263800 Malus domestica HOM05D000776 ORTHO05D002281 1.4e-10 69.3 52 61.5
SGA_v2.0_scaffold298G47641 Striga asiatica HOM05D000776 ORTHO05D002281 1.4e-10 69.3 49 63.3
Cc09_g07050 Coffea canephora HOM05D000776 ORTHO05D002281 1.8e-10 68.9 51 64.7
Sabra11G0143900 Salix brachista HOM05D000776 ORTHO05D002281 1.8e-10 68.9 51 60.8
A09p35790 Brassica napus HOM05D000776 ORTHO05D002281 2.4e-10 68.6 60 61.7
BraA09t39102Z Brassica rapa HOM05D000776 ORTHO05D002281 2.4e-10 68.6 60 61.7
Lalb_Chr12g0204371 Lupinus albus HOM05D000776 ORTHO05D002281 2.4e-10 68.6 41 73.2
Oeu000490.1 Olea europaea HOM05D000776 ORTHO05D002281 2.4e-10 68.6 49 67.3
Actinidia32351 Actinidia chinensis HOM05D000776 ORTHO05D002281 3.1e-10 68.2 57 61.4
Dinv04217 Davidia involucrata HOM05D000776 ORTHO05D002281 3.1e-10 68.2 65 56.9
Duzib160G0798 Durio zibethinus HOM05D000776 ORTHO05D002281 3.1e-10 68.2 42 71.4
TWI38G1948 Tripterygium wilfordii HOM05D000776 ORTHO05D002281 4.1e-10 67.8 58 60.3
Haze_05956 Corylus avellana HOM05D000776 ORTHO05D002281 5.3e-10 67.4 49 65.3
Gohir.D06G122100 Gossypium hirsutum HOM05D000776 ORTHO05D002281 5.3e-10 67.4 56 62.5
Atru.chr10.665 Acer truncatum HOM05D000776 ORTHO05D002281 7.0e-10 67.0 49 65.3
Aa31LG6G11860 Aethionema arabicum HOM05D000776 ORTHO05D002281 7.0e-10 67.0 43 69.8
Carub.0001s2888 Capsella rubella HOM05D000776 ORTHO05D002281 7.0e-10 67.0 49 67.3
Glyma.05G170300 Glycine max HOM05D000776 ORTHO05D002281 7.0e-10 67.0 41 70.7
MD10G1241500 Malus domestica HOM05D000776 ORTHO05D002281 7.0e-10 67.0 52 59.6
Nn7g37767 Nelumbo nucifera HOM05D000776 ORTHO05D002281 7.0e-10 67.0 42 71.4
MSTRG.16320 Avicennia marina HOM05D000776 ORTHO05D002281 9.1e-10 66.6 53 58.5
COL.COLO4_26891 Corchorus olitorius HOM05D000776 ORTHO05D002281 9.1e-10 66.6 41 70.7
Duzib235G0712 Durio zibethinus HOM05D000776 ORTHO05D002281 9.1e-10 66.6 41 70.7
Glyma.09G030300 Glycine max HOM05D000776 ORTHO05D002281 9.1e-10 66.6 62 59.7
Gohir.A06G118300 Gossypium hirsutum HOM05D000776 ORTHO05D002281 1.2e-09 66.2 56 62.5
Potri.011G156100 Populus trichocarpa HOM05D000776 ORTHO05D002281 1.2e-09 66.2 51 58.8
Rhsim02G0165700 Rhododendron simsii HOM05D000776 ORTHO05D002281 1.2e-09 66.2 44 68.2
THA.LOC104814338 Tarenaya hassleriana HOM05D000776 ORTHO05D002281 1.2e-09 66.2 59 54.2
GSVIVG01021749001 Vitis vinifera HOM05D000776 ORTHO05D002281 1.2e-09 66.2 46 67.4
CAN.G675.29 Capsicum annuum HOM05D000776 ORTHO05D002281 1.6e-09 65.9 52 59.6
Gorai.010G142300 Gossypium raimondii HOM05D000776 ORTHO05D002281 1.6e-09 65.9 56 60.7
Lsat_1_v5_gn_1_86980 Lactuca sativa HOM05D000776 ORTHO05D002281 1.6e-09 65.9 41 73.2
RcHm_v2.0_Chr5g0018331 Rosa chinensis HOM05D000776 ORTHO05D002281 1.6e-09 65.9 52 57.7
Sabra16G0311200 Salix brachista HOM05D000776 ORTHO05D002281 1.6e-09 65.9 49 59.2
Duzib192G0040 Durio zibethinus HOM05D000776 ORTHO05D002281 2.0e-09 65.5 56 60.7
FvH4_3g11380 Fragaria vesca HOM05D000776 ORTHO05D002281 2.0e-09 65.5 55 60.0
FAN16G1384 Fragaria x ananassa HOM05D000776 ORTHO05D002281 2.0e-09 65.5 55 60.0
FAN25G0598 Fragaria x ananassa HOM05D000776 ORTHO05D002281 2.0e-09 65.5 55 60.0
Glyma.15G136000 Glycine max HOM05D000776 ORTHO05D002281 2.0e-09 65.5 56 58.9
Manes.14G126800 Manihot esculenta HOM05D000776 ORTHO05D002281 2.0e-09 65.5 49 63.3
Phvul.006G122600 Phaseolus vulgaris HOM05D000776 ORTHO05D002281 2.0e-09 65.5 56 58.9
Potri.001G459700 Populus trichocarpa HOM05D000776 ORTHO05D002281 2.0e-09 65.5 49 59.2
Sed0007552 Sechium edule HOM05D000776 ORTHO05D002281 2.0e-09 65.5 49 57.1
DCAR_007808 Daucus carota HOM05D000776 ORTHO05D002281 2.7e-09 65.1 46 63.0
Lalb_Chr18g0058371 Lupinus albus HOM05D000776 ORTHO05D002281 2.7e-09 65.1 53 58.5
VMungo0540G0014 Vigna mungo HOM05D000776 ORTHO05D002281 2.7e-09 65.1 60 55.0
Carub.0004s1653 Capsella rubella HOM05D000776 ORTHO05D002281 3.5e-09 64.7 48 58.3
Rhsim13G0126000 Rhododendron simsii HOM05D000776 ORTHO05D002281 3.5e-09 64.7 41 70.7
RhsimUnG0100500 Rhododendron simsii HOM05D000776 ORTHO05D002281 3.5e-09 64.7 41 70.7
TAR627G0166 Trochodendron aralioides HOM05D000776 ORTHO05D002281 3.5e-09 64.7 41 70.7
CANSAT35G0967 Cannabis sativa HOM05D000776 ORTHO05D002281 4.5e-09 64.3 41 68.3
Cfa000763 Carpinus fangiana HOM05D000776 ORTHO05D002281 4.5e-09 64.3 59 54.2
MELO3C007043.2 Cucumis melo HOM05D000776 ORTHO05D002281 4.5e-09 64.3 41 68.3
CsaV3_6G052660 Cucumis sativus L. HOM05D000776 ORTHO05D002281 4.5e-09 64.3 49 59.2
Eucgr.D01025 Eucalyptus grandis HOM05D000776 ORTHO05D002281 4.5e-09 64.3 40 67.5
FAN21G1354 Fragaria x ananassa HOM05D000776 ORTHO05D002281 4.5e-09 64.3 55 58.2
arahy.Tifrunner.gnm1.ann1.SPE1H9 Arachis hypogaea HOM05D000776 ORTHO05D002281 5.9e-09 63.9 45 60.0
ClCG01G008860 Citrullus lanatus HOM05D000776 ORTHO05D002281 5.9e-09 63.9 41 63.4
Ciclev10015404m.g Citrus clementina HOM05D000776 ORTHO05D002281 5.9e-09 63.9 41 68.3
MELO3C021813.2 Cucumis melo HOM05D000776 ORTHO05D002281 5.9e-09 63.9 44 59.1
AL4G30860 Arabidopsis lyrata HOM05D000776 ORTHO05D002281 7.7e-09 63.5 57 50.9
CsaV3_1G037730 Cucumis sativus L. HOM05D000776 ORTHO05D002281 7.7e-09 63.5 41 63.4
Glyma.08G128500 Glycine max HOM05D000776 ORTHO05D002281 7.7e-09 63.5 41 68.3
Actinidia31377 Actinidia chinensis HOM05D000776 ORTHO05D054759 1.0e-08 63.2 47 61.7
arahy.Tifrunner.gnm1.ann1.H36ZD0 Arachis hypogaea HOM05D000776 ORTHO05D002281 1.7e-08 62.4 45 57.8
Ca_00930_v3 Cicer arietinum L. HOM05D000776 ORTHO05D002281 1.7e-08 62.4 46 58.7
ClCG01G025410 Citrullus lanatus HOM05D000776 ORTHO05D002281 1.7e-08 62.4 41 65.9
TPR.G8010 Trifolium pratense HOM05D000776 ORTHO05D002281 1.7e-08 62.4 46 58.7
arahy.Tifrunner.gnm1.ann1.B6KQ5X Arachis hypogaea HOM05D000776 ORTHO05D002281 2.2e-08 62.0 41 68.3
arahy.Tifrunner.gnm1.ann1.X036C8 Arachis hypogaea HOM05D000776 ORTHO05D002281 2.2e-08 62.0 41 68.3
Ca_17813_v3 Cicer arietinum L. HOM05D000776 ORTHO05D002281 2.2e-08 62.0 56 55.4
Gohir.A10G005700 Gossypium hirsutum HOM05D000776 ORTHO05D002281 2.2e-08 62.0 49 61.2
Gohir.D10G005700 Gossypium hirsutum HOM05D000776 ORTHO05D002281 2.2e-08 62.0 48 62.5
Gorai.011G006300 Gossypium raimondii HOM05D000776 ORTHO05D002281 2.2e-08 62.0 48 62.5
Actinidia29250 Actinidia chinensis HOM05D000776 ORTHO05D002281 2.9e-08 61.6 65 50.8
Medtr2g032100 Medicago truncatula HOM05D000776 ORTHO05D002281 3.8e-08 61.2 60 55.0
Medtr8g089180 Medicago truncatula HOM05D000776 ORTHO05D002281 5.0e-08 60.8 56 55.4
HanXRQChr01g0005501 Helianthus annuus HOM05D000776 ORTHO05D002281 6.5e-08 60.5 41 65.9
TPR.G6276 Trifolium pratense HOM05D000776 ORTHO05D002281 6.5e-08 60.5 54 53.7
AUR62038456 Chenopodium quinoa HOM05D000776 ORTHO05D002281 8.5e-08 60.1 42 59.5
Lj6g0025051 Lotus japonicus HOM05D000776 ORTHO05D002281 8.5e-08 60.1 45 60.0
Thhalv10025334m.g Eutrema salsugineum HOM05D000776 ORTHO05D002281 1.1e-07 59.7 59 44.1
Psat1g164120 Pisum sativum HOM05D000776 ORTHO05D002281 1.1e-07 59.7 60 51.7
vmacro10992 Vaccinium macrocarpon HOM05D000776 ORTHO05D002281 1.1e-07 59.7 49 61.2
VMungo0251G2018 Vigna mungo HOM05D000776 ORTHO05D002281 1.1e-07 59.7 65 49.2
Ah.12g061630 Amaranthus hybridus HOM05D000776 ORTHO05D002281 1.5e-07 59.3 57 50.9
Phvul.002G251100 Phaseolus vulgaris HOM05D000776 ORTHO05D002281 1.5e-07 59.3 41 61.0
Sed0009509 Sechium edule HOM05D000776 ORTHO05D002281 1.5e-07 59.3 41 61.0
THA.LOC104806245 Tarenaya hassleriana HOM05D000776 ORTHO05D002281 1.5e-07 59.3 42 57.1
Sed0014226 Sechium edule HOM05D000776 ORTHO05D002281 1.9e-07 58.9 41 58.5
BcaB02g09503 Brassica carinata HOM05D000776 ORTHO05D002281 3.2e-07 58.2 48 54.2
Hund17651 Selenicereus undatus HOM05D000776 ORTHO05D002281 3.2e-07 58.2 41 58.5
EL10Ac5g11706 Beta vulgaris HOM05D000776 ORTHO05D002281 4.2e-07 57.8 42 57.1
BcaC02g11568 Brassica carinata HOM05D000776 ORTHO05D002281 4.2e-07 57.8 48 54.2
BcaNung04157 Brassica carinata HOM05D000776 ORTHO05D002281 4.2e-07 57.8 59 42.4
A05p10820 Brassica napus HOM05D000776 ORTHO05D002281 4.2e-07 57.8 48 54.2
BraA05t20026Z Brassica rapa HOM05D000776 ORTHO05D002281 4.2e-07 57.8 48 54.2
PGR083G2804 Punica granatum HOM05D000776 ORTHO05D002281 4.2e-07 57.8 48 54.2
Sp4g17130 Schrenkiella parvula HOM05D000776 ORTHO05D002281 5.5e-07 57.4 46 54.3
Hund17652 Selenicereus undatus HOM05D000776 ORTHO05D002281 5.5e-07 57.4 56 44.6
BcaB03g11675 Brassica carinata HOM05D000776 ORTHO05D002281 7.2e-07 57.0 59 40.7
AUR62042154 Chenopodium quinoa HOM05D000776 ORTHO05D002281 7.2e-07 57.0 42 57.1
Lj4g0017613 Lotus japonicus HOM05D000776 ORTHO05D002281 7.2e-07 57.0 56 53.6
Lalb_Chr15g0088991 Lupinus albus HOM05D000776 ORTHO05D002281 7.2e-07 57.0 56 46.4
Ah.02g115910 Amaranthus hybridus HOM05D000776 ORTHO05D002281 9.4e-07 56.6 57 49.1
BcaC09g51317 Brassica carinata HOM05D000776 ORTHO05D002281 9.4e-07 56.6 59 40.7
A01p12150 Brassica napus HOM05D000776 ORTHO05D002281 9.4e-07 56.6 59 40.7
C01p14470 Brassica napus HOM05D000776 ORTHO05D002281 9.4e-07 56.6 59 40.7
BraA01t01157Z Brassica rapa HOM05D000776 ORTHO05D002281 9.4e-07 56.6 59 40.7
BolC1t01402H Brassica oleracea HOM05D000776 ORTHO05D002281 1.2e-06 56.2 59 40.7
Sp7g18810 Schrenkiella parvula HOM05D000776 ORTHO05D002281 1.2e-06 56.2 59 39.0
AL7G33410 Arabidopsis lyrata HOM05D000776 ORTHO05D002281 1.6e-06 55.8 59 40.7
AT4G20460 Arabidopsis thaliana HOM05D000776 ORTHO05D002281 1.6e-06 55.8 59 40.7
BcaC01g00676 Brassica carinata HOM05D000776 ORTHO05D027426 1.6e-06 55.8 63 38.1
BolC3t20580H Brassica oleracea HOM05D000776 ORTHO05D002281 1.6e-06 55.8 49 46.9
A08p14910 Brassica napus HOM05D000776 ORTHO05D002281 2.1e-06 55.5 59 40.7
BraA08t33473Z Brassica rapa HOM05D000776 ORTHO05D002281 2.1e-06 55.5 59 40.7
CiPaw.09G148300 Carya illinoinensis HOM05D000776 ORTHO05D002281 2.1e-06 55.5 49 55.1
Lalb_Chr20g0120291 Lupinus albus HOM05D000776 ORTHO05D002281 2.1e-06 55.5 46 52.2
BcaC01g00675 Brassica carinata HOM05D000776 ORTHO05D002281 2.7e-06 55.1 59 40.7
C03p82990 Brassica napus HOM05D000776 ORTHO05D002281 2.7e-06 55.1 59 40.7
Psat7g061040 Pisum sativum HOM05D000776 ORTHO05D002281 2.7e-06 55.1 40 57.5
unitig_32.g10879 Utricularia gibba HOM05D000776 ORTHO05D002281 2.7e-06 55.1 41 61.0
C04p13920 Brassica napus HOM05D000776 ORTHO05D002281 6.1e-06 53.9 48 52.1
HPP92_005920 Vanilla planifolia HOM05D000776 ORTHO05D002281 6.1e-06 53.9 42 54.8
HPP92_005926 Vanilla planifolia HOM05D000776 ORTHO05D002281 6.1e-06 53.9 42 54.8
unitig_748.g8276 Utricularia gibba HOM05D000776 ORTHO05D002281 8.0e-06 53.5 44 52.3
Zm00001eb431050 Zea mays HOM05D000776 ORTHO05D002281 8.0e-06 53.5 51 51.0


User provided reference genes

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