Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005164g0040 Nicotiana tabacum HOM05D005319 ORTHO05D006632 0.0e+00 1555.4 844 100.0
Nitab4.5_0003247g0020 Nicotiana tabacum HOM05D005319 ORTHO05D006632 0.0e+00 1476.5 859 94.2
Solyc01g102970.3 Solanum lycopersicum HOM05D005319 ORTHO05D006632 0.0e+00 1326.6 861 84.7
Sopen01g045380 Solanum pennellii HOM05D005319 ORTHO05D006632 0.0e+00 1325.5 861 84.6
CAN.G855.58 Capsicum annuum HOM05D005319 ORTHO05D006632 0.0e+00 1299.6 860 84.7
Peaxi162Scf00011g02012 Petunia axillaris HOM05D005319 ORTHO05D006632 0.0e+00 1246.9 859 78.5
Hma1.2p1_0052F.1_g030050 Hydrangea macrophylla HOM05D005319 ORTHO05D006632 2.3e-282 975.7 858 62.2
MSTRG.16462 Avicennia marina HOM05D005319 ORTHO05D006632 2.3e-274 949.1 863 61.0
CSS0036760 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 4.3e-273 944.9 816 62.3
Rhsim05G0118000 Rhododendron simsii HOM05D005319 ORTHO05D006632 2.7e-267 925.6 807 61.2
Cc02_g23690 Coffea canephora HOM05D005319 ORTHO05D006632 3.9e-266 921.8 876 62.6
Actinidia26200 Actinidia chinensis HOM05D005319 ORTHO05D006632 4.3e-265 918.3 862 61.6
CSS0030211 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 1.2e-264 916.8 811 61.0
vmacro19823 Vaccinium macrocarpon HOM05D005319 ORTHO05D006632 6.4e-261 904.4 831 58.8
Lj5A285G49 Lonicera japonica HOM05D005319 ORTHO05D006632 3.9e-258 895.2 839 59.4
Ciclev10000238m.g Citrus clementina HOM05D005319 ORTHO05D006632 1.2e-254 883.6 829 58.4
Cfa004432 Carpinus fangiana HOM05D005319 ORTHO05D006632 6.4e-253 877.9 847 60.2
Manes.07G031200 Manihot esculenta HOM05D005319 ORTHO05D006632 6.6e-250 867.8 836 57.7
TAR628G0438 Trochodendron aralioides HOM05D005319 ORTHO05D006632 3.3e-249 865.5 848 56.5
Atru.chr6.211 Acer truncatum HOM05D005319 ORTHO05D006632 2.8e-248 862.4 860 56.9
SGA_v2.0_scaffold254G45232 Striga asiatica HOM05D005319 ORTHO05D006632 1.1e-244 850.5 840 57.5
QL02p103594 Quercus lobata HOM05D005319 ORTHO05D006632 3.2e-244 849.0 816 59.8
GSVIVG01023136001 Vitis vinifera HOM05D005319 ORTHO05D006632 5.1e-242 841.6 838 58.6
Prupe.1G586100 Prunus persica HOM05D005319 ORTHO05D006632 2.5e-241 839.3 864 58.0
Thecc.06G020300 Theobroma cacao HOM05D005319 ORTHO05D006632 2.1e-240 836.3 851 57.5
Potri.004G229732 Populus trichocarpa HOM05D005319 ORTHO05D006632 1.1e-239 833.9 808 56.1
Gorai.009G114100 Gossypium raimondii HOM05D005319 ORTHO05D006632 4.0e-239 832.0 805 57.4
CANSAT01G0698 Cannabis sativa HOM05D005319 ORTHO05D006632 3.4e-238 828.9 861 57.3
Gohir.D05G110000 Gossypium hirsutum HOM05D005319 ORTHO05D006632 3.4e-238 828.9 846 55.7
Medtr8g015930 Medicago truncatula HOM05D005319 ORTHO05D006632 7.6e-238 827.8 816 55.0
Duzib192G0868 Durio zibethinus HOM05D005319 ORTHO05D006632 9.9e-238 827.4 825 56.8
Sc12g0006940 Simmondsia chinensis HOM05D005319 ORTHO05D006632 1.3e-237 827.0 864 55.9
Haze_09972 Corylus avellana HOM05D005319 ORTHO05D006632 1.7e-237 826.6 852 57.2
RcHm_v2.0_Chr7g0219031 Rosa chinensis HOM05D005319 ORTHO05D006632 2.2e-237 826.2 807 57.7
Gohir.A05G109700 Gossypium hirsutum HOM05D005319 ORTHO05D006632 6.4e-237 824.7 805 57.0
VMungo1127G0564 Vigna mungo HOM05D005319 ORTHO05D006632 4.2e-236 822.0 809 55.9
Glyma.12G164200 Glycine max HOM05D005319 ORTHO05D006632 5.5e-236 821.6 817 54.7
unitig_8.g2963 Utricularia gibba HOM05D005319 ORTHO05D006632 5.5e-236 821.6 803 57.2
THA.LOC104806623 Tarenaya hassleriana HOM05D005319 ORTHO05D006632 6.0e-235 818.1 811 56.4
Glyma.16G000500 Glycine max HOM05D005319 ORTHO05D006632 1.0e-234 817.4 813 54.7
MD15G1443600 Malus domestica HOM05D005319 ORTHO05D006632 1.0e-234 817.4 864 56.6
Sed0027556 Sechium edule HOM05D005319 ORTHO05D006632 3.0e-234 815.8 841 54.2
MD08G1248800 Malus domestica HOM05D005319 ORTHO05D006632 3.9e-234 815.5 844 56.5
FvH4_5g27610 Fragaria vesca HOM05D005319 ORTHO05D006632 5.1e-234 815.1 836 56.0
Lj5g0014697 Lotus japonicus HOM05D005319 ORTHO05D006632 1.1e-233 813.9 807 55.3
Phvul.006G221600 Phaseolus vulgaris HOM05D005319 ORTHO05D006632 2.5e-233 812.8 819 54.7
CsaV3_5G027480 Cucumis sativus L. HOM05D005319 ORTHO05D006632 1.8e-231 806.6 868 53.8
Psat1g223960 Pisum sativum HOM05D005319 ORTHO05D006632 1.8e-231 806.6 818 54.4
TPR.G5958 Trifolium pratense HOM05D005319 ORTHO05D006632 1.8e-231 806.6 817 54.7
Gorai.011G090800 Gossypium raimondii HOM05D005319 ORTHO05D006632 7.6e-230 801.2 803 56.0
PGR142G1786 Punica granatum HOM05D005319 ORTHO05D006632 3.8e-229 798.9 811 52.9
Gohir.D10G083500 Gossypium hirsutum HOM05D005319 ORTHO05D006632 8.4e-229 797.7 804 56.2
HanXRQChr03g0090101 Helianthus annuus HOM05D005319 ORTHO05D006632 8.4e-229 797.7 822 56.2
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 3.2e-228 795.8 875 51.3
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 5.1e-226 788.5 802 54.4
arahy.Tifrunner.gnm1.ann1.2TW5YI Arachis hypogaea HOM05D005319 ORTHO05D006632 1.5e-225 786.9 815 53.5
COL.COLO4_31114 Corchorus olitorius HOM05D005319 ORTHO05D006632 5.7e-225 785.0 808 55.6
MELO3C022920.2 Cucumis melo HOM05D005319 ORTHO05D006632 4.8e-224 781.9 780 54.7
ECA240G4281 Erigeron canadensis HOM05D005319 ORTHO05D006632 4.8e-224 781.9 858 52.7
Thhalv10024416m.g Eutrema salsugineum HOM05D005319 ORTHO05D006632 4.1e-223 778.9 821 54.4
Sabra01G0174900 Salix brachista HOM05D005319 ORTHO05D006632 5.9e-222 775.0 777 54.4
FAN13G2205 Fragaria x ananassa HOM05D005319 ORTHO05D006632 1.1e-220 770.8 846 54.0
AUR62042963 Chenopodium quinoa HOM05D005319 ORTHO05D006632 9.3e-220 767.7 868 51.5
ClCG11G000090 Citrullus lanatus HOM05D005319 ORTHO05D006632 1.6e-219 766.9 860 52.3
Nn4g24765 Nelumbo nucifera HOM05D005319 ORTHO05D006632 1.6e-219 766.9 834 52.4
Carub.0007s1678 Capsella rubella HOM05D005319 ORTHO05D006632 3.5e-219 765.8 853 52.4
Sp7g22260 Schrenkiella parvula HOM05D005319 ORTHO05D006632 6.1e-219 765.0 822 53.5
FAN18G0588 Fragaria x ananassa HOM05D005319 ORTHO05D006632 1.0e-218 764.2 846 53.2
Nn5g27146 Nelumbo nucifera HOM05D005319 ORTHO05D006632 5.7e-217 758.4 812 52.8
CARHR231700 Cardamine hirsuta HOM05D005319 ORTHO05D006632 1.4e-215 753.8 835 53.2
AL7G28980 Arabidopsis lyrata HOM05D005319 ORTHO05D006632 1.8e-215 753.4 854 53.2
Dinv29683 Davidia involucrata HOM05D005319 ORTHO05D006632 6.9e-215 751.5 689 58.8
Migut.B00712 Erythranthe guttata HOM05D005319 ORTHO05D006632 7.7e-214 748.0 625 67.0
AUR62041124 Chenopodium quinoa HOM05D005319 ORTHO05D006632 1.0e-213 747.7 908 48.8
Lsat_1_v5_gn_9_125320 Lactuca sativa HOM05D005319 ORTHO05D006632 1.3e-213 747.3 825 54.4
C01p19580 Brassica napus HOM05D005319 ORTHO05D006632 8.5e-213 744.6 835 52.3
Eucgr.I02798 Eucalyptus grandis HOM05D005319 ORTHO05D006632 1.4e-212 743.8 651 58.2
AT4G24270 Arabidopsis thaliana HOM05D005319 ORTHO05D006632 4.2e-212 742.3 850 52.8
PSO017G2844 Papaver somniferum HOM05D005319 ORTHO05D006632 2.1e-211 740.0 817 52.6
Aa31LG7G10320 Aethionema arabicum HOM05D005319 ORTHO05D006632 1.0e-210 737.6 871 51.7
BcaNung01135 Brassica carinata HOM05D005319 ORTHO05D006632 1.4e-210 737.3 851 51.5
PSO170G3892 Papaver somniferum HOM05D005319 ORTHO05D006632 1.8e-210 736.9 816 52.1
A01p15600 Brassica napus HOM05D005319 ORTHO05D006632 3.9e-210 735.7 825 53.1
BraA01t01501Z Brassica rapa HOM05D005319 ORTHO05D006632 1.1e-209 734.2 825 52.5
BcaC09g50887 Brassica carinata HOM05D005319 ORTHO05D006632 2.5e-209 733.0 849 50.8
FAN04G2290 Fragaria x ananassa HOM05D005319 ORTHO05D006632 2.5e-209 733.0 802 54.0
CDE07G1780 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 5.7e-209 731.9 859 49.7
BolC1t01883H Brassica oleracea HOM05D005319 ORTHO05D006632 8.2e-208 728.0 838 50.7
Aqoxy6G00019 Aquilegia oxysepala HOM05D005319 ORTHO05D006632 1.7e-205 720.3 819 49.7
Cpa.g.sc173.4 Carica papaya HOM05D005319 ORTHO05D006632 1.4e-199 700.7 826 54.2
HPP92_001202 Vanilla planifolia HOM05D005319 ORTHO05D006632 3.7e-192 676.0 815 48.3
CDE04G1013 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 2.7e-190 669.8 776 50.0
Zm00001eb260720 Zea mays HOM05D005319 ORTHO05D006632 5.9e-190 668.7 820 48.5
Os08g0113200 Oryza sativa ssp. japonica HOM05D005319 ORTHO05D006632 7.2e-188 661.8 816 48.4
DCAR_003273 Daucus carota HOM05D005319 ORTHO05D006632 1.1e-183 647.9 862 45.2
Prupe.2G119000 Prunus persica HOM05D005319 ORTHO05D006632 4.1e-175 619.4 846 47.8
CiPaw.05G159300 Carya illinoinensis HOM05D005319 ORTHO05D006632 4.7e-171 605.9 534 59.4
Pp3c2_22040 Physcomitrium patens HOM05D005319 ORTHO05D006632 5.0e-165 585.9 832 40.6
ATR1089G095 Amborella trichopoda HOM05D005319 ORTHO05D006632 2.0e-161 573.9 681 47.0
PGSC0003DMG400020717 Solanum tuberosum HOM05D005319 ORTHO05D006632 1.9e-159 567.4 395 77.0
Gohir.A10G157900 Gossypium hirsutum HOM05D005319 ORTHO05D006632 9.2e-159 565.1 627 54.9
AagrBONN_evm.TU.Sc2ySwM_228.2043 Anthoceros agrestis HOM05D005319 ORTHO05D006632 2.1e-155 553.9 826 41.0
Mapoly0013s0201 Marchantia polymorpha HOM05D005319 ORTHO05D006632 5.4e-151 539.3 820 39.3
SMO367G0583 Selaginella moellendorffii HOM05D005319 ORTHO05D006632 1.6e-142 511.1 819 38.0
EL10As26g24243 Beta vulgaris HOM05D005319 ORTHO05D006632 4.0e-138 496.5 431 58.9
SHI04989 Sapria himalayana HOM05D005319 ORTHO05D006632 2.0e-137 494.2 582 47.8
Ca_00016_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 6.0e-134 482.6 533 51.4
MBI03_g21086_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 2.7e-126 457.2 390 62.3
Actinidia01642 Actinidia chinensis HOM05D005319 ORTHO05D006632 5.1e-125 453.0 498 55.0
CBR_g44339 Chara braunii HOM05D005319 ORTHO05D006632 4.3e-124 449.9 868 35.5
Oeu043602.1 Olea europaea HOM05D005319 ORTHO05D006632 1.8e-122 444.5 484 57.9
ECA247G0718 Erigeron canadensis HOM05D005319 ORTHO05D006632 8.1e-115 419.1 481 50.1
Oeu043603.1 Olea europaea HOM05D005319 ORTHO05D006632 9.4e-95 352.4 479 47.0
MBI03_g34263_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 1.4e-82 312.0 429 47.6
EL10As26g24244 Beta vulgaris HOM05D005319 ORTHO05D006632 5.5e-79 300.1 423 45.4
Cre12.g546700 Chlamydomonas reinhardtii HOM05D005319 ORTHO05D006632 1.9e-71 275.0 532 32.5
C01p22600 Brassica napus HOM05D005319 ORTHO05D006632 1.0e-69 269.2 234 56.8
Ca_28127_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 1.8e-50 205.3 192 54.7
Hund15346 Selenicereus undatus HOM05D005319 ORTHO05D006632 2.7e-49 201.4 353 41.4
CiPaw.05G159200 Carya illinoinensis HOM05D005319 ORTHO05D006632 6.8e-37 160.2 201 49.3
PRCOL_00002327 Prasinoderma coloniale HOM05D005319 ORTHO05D006632 1.1e-31 142.9 479 24.6
Lj1A1166G73 Lonicera japonica HOM05D005319 ORTHO05D006632 6.4e-27 127.1 370 32.2
MCO03G034 Micromonas commoda HOM05D005319 ORTHO05D006632 5.4e-26 124.0 195 38.5
Lj1A1166G72 Lonicera japonica HOM05D005319 ORTHO05D006632 4.6e-25 120.9 196 43.4
BcaC09g50640 Brassica carinata HOM05D005319 ORTHO05D006632 1.0e-24 119.8 213 35.7
Ciclev10004084m.g Citrus clementina HOM05D005319 ORTHO05D006632 1.3e-24 119.4 80 68.8
SHI04988 Sapria himalayana HOM05D005319 ORTHO05D006632 3.0e-24 118.2 120 50.8
SEGI_30405 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 8.1e-22 110.2 95 50.5
SHI04990 Sapria himalayana HOM05D005319 ORTHO05D006632 2.4e-18 98.6 144 48.6
Lj6A128G22 Lonicera japonica HOM05D005319 ORTHO05D006632 3.0e-16 91.7 171 41.5
SEGI_30773 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 2.8e-14 85.1 104 41.3
Oeu016642.3 Olea europaea HOM05D001586 ORTHO05D001543 1.9e-10 72.4 85 44.7
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 5.4e-10 70.9 62 62.9
FAN08G2337 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.2e-09 69.7 56 66.1
EL10Ac6g13976 Beta vulgaris HOM05D005319 ORTHO05D006632 2.3e-08 65.5 53 67.9
EL10Ac9g22556 Beta vulgaris HOM05D005319 ORTHO05D006632 2.3e-08 65.5 53 67.9
C01p22550 Brassica napus HOM05D005319 ORTHO05D006632 3.9e-08 64.7 122 38.5
BolC1t02188H Brassica oleracea HOM05D005319 ORTHO05D006632 3.9e-08 64.7 122 38.5
Hund17863 Selenicereus undatus HOM05D002279 ORTHO05D002644 1.5e-07 62.8 444 21.2


User provided reference genes

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