Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005084g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 3.2e-210 735.3 526 100.0
Peaxi162Scf01164g00006 Petunia axillaris HOM05D004380 ORTHO05D005134 2.4e-157 559.7 583 76.3
CAN.G1336.5 Capsicum annuum HOM05D004380 ORTHO05D005134 1.3e-155 553.9 565 74.5
PGSC0003DMG400022576 Solanum tuberosum HOM05D004380 ORTHO05D005134 5.6e-154 548.5 571 75.1
Nitab4.5_0008421g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 7.2e-154 548.1 528 81.1
Solyc03g033950.4 Solanum lycopersicum HOM05D004380 ORTHO05D005134 1.5e-143 513.8 534 74.2
Sopen03g006700 Solanum pennellii HOM05D004380 ORTHO05D005134 1.1e-128 464.5 520 70.2
GSVIVG01013206001 Vitis vinifera HOM05D004380 ORTHO05D005134 6.0e-116 422.2 537 55.9
Migut.J01084 Erythranthe guttata HOM05D004380 ORTHO05D005134 1.3e-115 421.0 561 51.0
SGA_v2.0_scaffold86G26890 Striga asiatica HOM05D004380 ORTHO05D005134 4.4e-111 406.0 562 48.8
Cfa012380 Carpinus fangiana HOM05D004380 ORTHO05D005134 9.9e-111 404.8 542 54.4
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 2.4e-109 400.2 540 52.0
Cc01_g02120 Coffea canephora HOM05D004380 ORTHO05D005134 9.3e-109 398.3 573 57.8
Rhsim07G0121900 Rhododendron simsii HOM05D004380 ORTHO05D005134 1.2e-108 397.9 556 52.7
vmacro14143 Vaccinium macrocarpon HOM05D004380 ORTHO05D005134 4.6e-108 396.0 561 53.1
Actinidia10879 Actinidia chinensis HOM05D004380 ORTHO05D005134 1.3e-107 394.4 560 61.2
CiPaw.11G087400 Carya illinoinensis HOM05D004380 ORTHO05D005134 3.9e-107 392.9 547 50.1
Lsat_1_v5_gn_6_63641 Lactuca sativa HOM05D004380 ORTHO05D005134 2.6e-103 380.2 539 50.6
ECA233G1538 Erigeron canadensis HOM05D004380 ORTHO05D005134 4.5e-103 379.4 543 56.7
Haze_08305 Corylus avellana HOM05D004380 ORTHO05D005134 2.9e-102 376.7 576 55.2
DCAR_015696 Daucus carota HOM05D004380 ORTHO05D005134 1.9e-101 374.0 563 48.8
Cpa.g.sc69.34 Carica papaya HOM05D004380 ORTHO05D005134 3.2e-101 373.2 539 43.8
Potri.003G087200 Populus trichocarpa HOM05D004380 ORTHO05D005134 5.5e-101 372.5 562 56.2
THA.LOC104814403 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 5.5e-101 372.5 564 49.3
TWI81G0890 Tripterygium wilfordii HOM05D004380 ORTHO05D005134 1.2e-100 371.3 611 45.5
QL03p017813 Quercus lobata HOM05D004380 ORTHO05D005134 1.0e-99 368.2 547 51.2
HanXRQChr16g0500491 Helianthus annuus HOM05D004380 ORTHO05D005134 3.9e-99 366.3 545 53.4
Sed0018208 Sechium edule HOM05D004380 ORTHO05D005134 8.7e-99 365.2 568 45.6
Manes.15G172200 Manihot esculenta HOM05D004380 ORTHO05D005134 1.5e-98 364.4 613 50.7
ClCG03G011240 Citrullus lanatus HOM05D004380 ORTHO05D005134 2.5e-98 363.6 570 44.4
HanXRQChr12g0372541 Helianthus annuus HOM05D004380 ORTHO05D005134 1.6e-97 360.9 543 53.8
Thecc.05G299600 Theobroma cacao HOM05D004380 ORTHO05D005134 4.8e-97 359.4 553 58.4
Atru.chr1.3775 Acer truncatum HOM05D004380 ORTHO05D005134 1.1e-96 358.2 499 55.7
Dinv25182 Davidia involucrata HOM05D004380 ORTHO05D005134 9.0e-96 355.1 501 52.5
CsaV3_2G035720 Cucumis sativus L. HOM05D004380 ORTHO05D005134 1.2e-95 354.8 554 43.9
Ah.09g224390 Amaranthus hybridus HOM05D004380 ORTHO05D005134 2.6e-95 353.6 550 56.2
Gorai.007G293700 Gossypium raimondii HOM05D004380 ORTHO05D005134 7.6e-95 352.1 588 54.9
Hma1.2p1_0311F.1_g121260 Hydrangea macrophylla HOM05D004380 ORTHO05D005134 4.9e-94 349.4 567 52.7
Gohir.A11G262400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 8.4e-94 348.6 588 54.9
Aa31LG9G15640 Aethionema arabicum HOM05D004380 ORTHO05D005134 2.1e-92 344.0 548 49.5
CANSAT21G1629 Cannabis sativa HOM05D004380 ORTHO05D005134 6.0e-92 342.4 539 54.7
Oeu045705.2 Olea europaea HOM05D004380 ORTHO05D005134 1.3e-91 341.3 553 52.1
Duzib128G0331 Durio zibethinus HOM05D004380 ORTHO05D005134 2.3e-91 340.5 556 51.4
Thhalv10007193m.g Eutrema salsugineum HOM05D004380 ORTHO05D005134 2.3e-91 340.5 579 53.7
BcaB03g13784 Brassica carinata HOM05D004380 ORTHO05D005134 3.0e-91 340.1 543 57.3
Lalb_Chr04g0258181 Lupinus albus HOM05D004380 ORTHO05D005134 3.9e-91 339.7 543 47.1
Medtr8g030840 Medicago truncatula HOM05D004380 ORTHO05D005134 5.1e-91 339.3 540 49.3
Sabra03G0056900 Salix brachista HOM05D004380 ORTHO05D005134 8.7e-91 338.6 554 52.0
Nn6g33684 Nelumbo nucifera HOM05D004380 ORTHO05D005134 2.5e-90 337.0 649 52.2
CAN.G1823.5 Capsicum annuum HOM05D004380 ORTHO05D005134 7.4e-90 335.5 239 76.6
AL1G45970 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 2.1e-89 334.0 577 53.6
arahy.Tifrunner.gnm1.ann1.522STQ Arachis hypogaea HOM05D004380 ORTHO05D005134 3.7e-89 333.2 544 44.3
C05p39530 Brassica napus HOM05D004380 ORTHO05D005134 3.7e-89 333.2 564 56.0
MD16G1006500 Malus domestica HOM05D004380 ORTHO05D005134 4.8e-89 332.8 539 53.8
BcaC05g27949 Brassica carinata HOM05D004380 ORTHO05D005134 1.4e-88 331.3 564 54.1
BolC5t32694H Brassica oleracea HOM05D004380 ORTHO05D005134 2.4e-88 330.5 567 56.6
CARHR031210 Cardamine hirsuta HOM05D004380 ORTHO05D005134 9.0e-88 328.6 573 53.9
A05p25450 Brassica napus HOM05D004380 ORTHO05D005134 3.4e-87 326.6 553 54.6
Ciclev10033653m.g Citrus clementina HOM05D004380 ORTHO05D005134 3.4e-87 326.6 568 56.0
Gohir.D11G272400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 5.9e-87 325.9 588 52.7
unitig_21.g20505 Utricularia gibba HOM05D004380 ORTHO05D005134 1.0e-86 325.1 569 45.0
PSO782G4920 Papaver somniferum HOM05D004380 ORTHO05D005134 8.4e-86 322.0 534 58.4
AT1G31870 Arabidopsis thaliana HOM05D004380 ORTHO05D005134 1.1e-85 321.6 558 51.1
BraA05t21429Z Brassica rapa HOM05D004380 ORTHO05D005134 1.1e-85 321.6 555 53.7
Lj3g0000626 Lotus japonicus HOM05D004380 ORTHO05D005134 1.1e-85 321.6 538 52.0
TAR629G2821 Trochodendron aralioides HOM05D004380 ORTHO05D005134 1.1e-85 321.6 538 49.3
Carub.0001s3020 Capsella rubella HOM05D004380 ORTHO05D005134 1.4e-85 321.2 598 52.3
RcHm_v2.0_Chr4g0446311 Rosa chinensis HOM05D004380 ORTHO05D005134 4.2e-85 319.7 537 53.4
Glyma.07G070900 Glycine max HOM05D004380 ORTHO05D005134 6.1e-84 315.8 569 46.6
Prupe.8G202500 Prunus persica HOM05D004380 ORTHO05D005134 1.0e-83 315.1 535 43.0
Lj6C290G5 Lonicera japonica HOM05D004380 ORTHO05D005134 3.9e-83 313.2 586 46.6
PSO832G0693 Papaver somniferum HOM05D004380 ORTHO05D005134 3.9e-83 313.2 534 56.2
EL10Ac4g09041 Beta vulgaris HOM05D004380 ORTHO05D005134 8.7e-83 312.0 557 56.9
PSO063G6462 Papaver somniferum HOM05D004380 ORTHO05D005134 1.5e-82 311.2 534 56.7
AUR62007222 Chenopodium quinoa HOM05D004380 ORTHO05D005134 2.5e-82 310.5 558 48.0
Phvul.010G098800 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 4.3e-82 309.7 593 49.6
CDE02G1296 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 5.7e-82 309.3 579 45.3
VMungo0331G0855 Vigna mungo HOM05D004380 ORTHO05D005134 1.6e-81 307.8 538 50.4
FAN17G2609 Fragaria x ananassa HOM05D004380 ORTHO05D005134 8.2e-81 305.4 546 53.3
FAN22G0510 Fragaria x ananassa HOM05D004380 ORTHO05D005134 9.0e-80 302.0 544 52.2
Psat4g154840 Pisum sativum HOM05D004380 ORTHO05D005134 9.0e-80 302.0 538 48.0
FvH4_4g36560 Fragaria vesca HOM05D004380 ORTHO05D005134 1.3e-78 298.1 538 51.7
FAN12G0331 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.3e-78 298.1 538 51.7
FAN07G2732 Fragaria x ananassa HOM05D004380 ORTHO05D005134 2.9e-78 297.0 540 54.4
Sp1g27590 Schrenkiella parvula HOM05D004380 ORTHO05D005134 7.2e-77 292.4 487 57.3
Aqoxy3G00393 Aquilegia oxysepala HOM05D004380 ORTHO05D005134 2.3e-75 287.3 548 53.3
COL.COLO4_13527 Corchorus olitorius HOM05D004380 ORTHO05D005134 1.1e-72 278.5 214 66.4
CiPaw.04G096200 Carya illinoinensis HOM05D004380 ORTHO05D005134 1.8e-72 277.7 560 39.1
AUR62018778 Chenopodium quinoa HOM05D004380 ORTHO05D005134 1.8e-72 277.7 485 51.3
Os08g0178300 Oryza sativa ssp. japonica HOM05D004380 ORTHO05D005134 4.5e-71 273.1 556 52.3
Haze_08308 Corylus avellana HOM05D004380 ORTHO05D005134 7.4e-66 255.8 514 52.1
CAN.G248.21 Capsicum annuum HOM05D004380 ORTHO05D005134 8.2e-65 252.3 222 61.7
arahy.Tifrunner.gnm1.ann1.MX4EXC Arachis hypogaea HOM05D004380 ORTHO05D005134 1.6e-63 248.1 506 37.5
CDE11G0710 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 1.7e-62 244.6 528 41.1
ATR0665G406 Amborella trichopoda HOM05D004380 ORTHO05D005134 3.8e-62 243.4 625 48.0
Actinidia31472 Actinidia chinensis HOM05D004380 ORTHO05D005134 3.2e-61 240.4 274 52.6
THA.LOC104812727 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 2.3e-59 234.2 238 53.8
arahy.Tifrunner.gnm1.ann1.ARJY2C Arachis hypogaea HOM05D004380 ORTHO05D005134 7.7e-55 219.2 251 53.4
Pp3c3_10050 Physcomitrium patens HOM05D004380 ORTHO05D005134 7.7e-55 219.2 566 50.2
Sc22g0001370 Simmondsia chinensis HOM05D004380 ORTHO05D005134 1.0e-54 218.8 488 54.9
MELO3C024775.2 Cucumis melo HOM05D004380 ORTHO05D005134 2.9e-54 217.2 477 39.4
Mapoly0062s0011 Marchantia polymorpha HOM05D004380 ORTHO05D005134 1.1e-53 215.3 583 45.3
Aa31LG9G6660 Aethionema arabicum HOM05D004380 ORTHO05D005134 4.2e-53 213.4 141 74.5
SMO144G0180 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 4.2e-53 213.4 209 53.6
TPR.G23111 Trifolium pratense HOM05D004380 ORTHO05D005134 1.6e-52 211.5 141 70.9
SEGI_39298 Sequoiadendron giganteum HOM05D004380 ORTHO05D005134 2.1e-52 211.1 582 45.2
Phvul.011G076400 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 6.1e-52 209.5 183 57.9
Hund11501 Selenicereus undatus HOM05D004380 ORTHO05D005134 2.3e-51 207.6 141 72.3
AagrBONN_evm.TU.Sc2ySwM_117.3835 Anthoceros agrestis HOM05D004380 ORTHO05D005134 3.0e-51 207.2 252 48.8
HPP92_020120 Vanilla planifolia HOM05D004380 ORTHO05D005134 3.4e-50 203.8 162 65.4
HPP92_020130 Vanilla planifolia HOM05D004380 ORTHO05D005134 1.3e-49 201.8 161 65.2
Oeu037610.2 Olea europaea HOM05D004380 ORTHO05D005134 4.8e-49 199.9 415 46.5
Cpa.g.sc69.32 Carica papaya HOM05D004380 ORTHO05D005134 1.8e-48 198.0 141 69.5
arahy.Tifrunner.gnm1.ann1.I1PL9V Arachis hypogaea HOM05D004380 ORTHO05D005134 2.4e-48 197.6 160 61.2
Sed0024296 Sechium edule HOM05D004380 ORTHO05D005134 5.4e-48 196.4 199 54.3
CARHR062710 Cardamine hirsuta HOM05D004380 ORTHO05D005134 1.2e-47 195.3 172 59.9
SMO118G0163 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 3.5e-47 193.7 208 50.5
CBR_g26347 Chara braunii HOM05D004380 ORTHO05D005134 2.5e-45 187.6 219 49.3
DCAR_007574 Daucus carota HOM05D004380 ORTHO05D005134 4.4e-42 176.8 142 62.0
arahy.Tifrunner.gnm1.ann1.MH0ZUI Arachis hypogaea HOM05D004380 ORTHO05D005134 4.9e-41 173.3 97 77.3
TPR.G20578 Trifolium pratense HOM05D004380 ORTHO05D005134 6.3e-41 172.9 97 77.3
arahy.Tifrunner.gnm1.ann1.45D7QY Arachis hypogaea HOM05D004380 ORTHO05D005134 1.6e-39 168.3 160 56.2
CAN.G1186.1 Capsicum annuum HOM05D004380 ORTHO05D005134 3.5e-39 167.2 131 76.3
CSS0014122 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 2.5e-37 161.0 379 52.8
CSS0026269 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 2.5e-37 161.0 379 52.8
Ca_23634_v3 Cicer arietinum L. HOM05D000346 ORTHO05D000326 1.3e-33 148.7 375 44.0
MCO15G532 Micromonas commoda HOM05D004380 ORTHO05D005134 2.2e-33 147.9 256 35.2
Cre01.g003487 Chlamydomonas reinhardtii HOM05D004380 ORTHO05D005134 3.2e-32 144.1 188 45.7
Hund11272 Selenicereus undatus HOM05D004380 ORTHO05D005134 4.6e-31 140.2 145 62.8
Lsat_1_v5_gn_3_2421 Lactuca sativa HOM05D004380 ORTHO05D005134 5.9e-31 139.8 146 61.6
CSS0001415 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 1.0e-30 139.0 77 79.2
CSS0037993 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 1.0e-30 139.0 77 79.2
Haze_13061 Corylus avellana HOM05D000001 ORTHO05D010365 1.0e-30 139.0 144 65.3
SHI10270 Sapria himalayana HOM05D004380 ORTHO05D005134 1.8e-27 128.3 138 65.2
QL12p007207 Quercus lobata HOM05D004380 ORTHO05D005134 2.3e-27 127.9 161 55.9
Potri.001G147100 Populus trichocarpa HOM05D004380 ORTHO05D005134 1.2e-26 125.6 472 30.9
PRCOL_00005638 Prasinoderma coloniale HOM05D004380 ORTHO05D005134 1.3e-25 122.1 205 38.0
Sp5g21510 Schrenkiella parvula HOM05D004380 ORTHO05D005134 1.9e-21 108.2 91 59.3
Zm00001eb400590 Zea mays HOM05D004380 ORTHO05D005134 5.6e-21 106.7 172 44.8
TPR.G22617 Trifolium pratense HOM05D004380 ORTHO05D005134 1.5e-18 98.6 83 63.9
Dinv40656 Davidia involucrata HOM05D000301 ORTHO05D000303 7.5e-18 96.3 53 77.4
HPP92_020129 Vanilla planifolia HOM05D004380 ORTHO05D005134 1.2e-15 89.0 74 59.5
AL3G52660 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 1.0e-14 85.9 64 57.8
TPR.G11131 Trifolium pratense HOM05D004380 ORTHO05D005134 1.3e-14 85.5 112 47.3
Lj2C247T7 Lonicera japonica HOM05D004380 ORTHO05D005134 3.9e-14 84.0 77 61.0
TPR.G17657 Trifolium pratense HOM05D004380 ORTHO05D005134 5.2e-11 73.6 95 46.3
C05p31200 Brassica napus HOM05D004380 ORTHO05D005134 6.8e-11 73.2 64 56.2
Medtr8g446970 Medicago truncatula HOM05D004380 ORTHO05D005134 4.4e-10 70.5 69 58.0
Cfa026589 Carpinus fangiana HOM05D004380 ORTHO05D005134 2.7e-07 61.2 133 32.3
COL.COLO4_33038 Corchorus olitorius HOM05D004380 ORTHO05D005134 6.0e-07 60.1 89 47.2
HPP92_020119 Vanilla planifolia HOM05D004380 ORTHO05D005134 3.0e-06 57.8 66 59.1


User provided reference genes

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