Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005048g0030 Nicotiana tabacum HOM05D005249 ORTHO05D006457 5.6e-98 360.9 179 100.0
PGSC0003DMG400014394 Solanum tuberosum HOM05D005249 ORTHO05D006457 3.0e-83 312.0 179 87.2
Solyc10g006370.3 Solanum lycopersicum HOM05D005249 ORTHO05D006457 8.7e-83 310.5 179 87.2
Nitab4.5_0001393g0170 Nicotiana tabacum HOM05D005249 ORTHO05D006457 9.9e-79 297.0 180 87.2
Peaxi162Scf00387g00046 Petunia axillaris HOM05D005249 ORTHO05D006457 8.4e-78 293.9 179 86.6
CAN.G1781.9 Capsicum annuum HOM05D005249 ORTHO05D006457 2.6e-71 272.3 181 76.8
Sopen10g002320 Solanum pennellii HOM05D005249 ORTHO05D006457 2.6e-71 272.3 143 92.3
Lj8A167T50 Lonicera japonica HOM05D005249 ORTHO05D006457 9.0e-64 247.3 182 72.5
Dinv22281 Davidia involucrata HOM05D005249 ORTHO05D006457 1.7e-62 243.0 183 70.5
Hma1.2p1_1271F.1_g271820 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 8.4e-62 240.7 183 70.5
Hma1.2p1_1609F.1_g293423 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 8.4e-62 240.7 183 70.5
Cc05_g13500 Coffea canephora HOM05D005249 ORTHO05D006457 3.2e-61 238.8 189 70.9
TAR626G0063 Trochodendron aralioides HOM05D005249 ORTHO05D006457 5.5e-61 238.0 185 70.3
FvH4_3g22190 Fragaria vesca HOM05D005249 ORTHO05D006457 1.2e-60 236.9 182 71.4
CSS0021065 Camellia sinensis var. sinensis HOM05D005249 ORTHO05D006457 2.1e-60 236.1 184 71.2
Prupe.4G209000 Prunus persica HOM05D005249 ORTHO05D006457 4.6e-60 235.0 182 71.4
ClCG10G005560 Citrullus lanatus HOM05D005249 ORTHO05D006457 6.0e-60 234.6 179 68.2
Lsat_1_v5_gn_5_5181 Lactuca sativa HOM05D005249 ORTHO05D006457 6.0e-60 234.6 182 68.7
RcHm_v2.0_Chr5g0038151 Rosa chinensis HOM05D005249 ORTHO05D006457 6.0e-60 234.6 183 71.6
Migut.M01785 Erythranthe guttata HOM05D005249 ORTHO05D006457 7.9e-60 234.2 180 70.6
Haze_09646 Corylus avellana HOM05D005249 ORTHO05D006457 1.0e-59 233.8 182 70.9
Cfa020386 Carpinus fangiana HOM05D005249 ORTHO05D006457 1.3e-59 233.4 182 70.9
QL08p011891 Quercus lobata HOM05D005249 ORTHO05D006457 1.3e-59 233.4 181 70.7
QL08p012062 Quercus lobata HOM05D005249 ORTHO05D006457 1.3e-59 233.4 181 70.7
CANSAT21G2135 Cannabis sativa HOM05D005249 ORTHO05D006457 2.3e-59 232.6 182 68.7
Gohir.D01G064800 Gossypium hirsutum HOM05D005249 ORTHO05D006457 3.9e-59 231.9 182 69.2
Gorai.002G085700 Gossypium raimondii HOM05D005249 ORTHO05D006457 3.9e-59 231.9 182 69.2
GSVIVG01002001001 Vitis vinifera HOM05D005249 ORTHO05D006457 5.1e-59 231.5 182 70.9
CsaV3_3G005280 Cucumis sativus L. HOM05D005249 ORTHO05D006457 1.5e-58 229.9 179 67.6
Gohir.A01G077300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 3.3e-58 228.8 182 68.7
Sed0007548 Sechium edule HOM05D005249 ORTHO05D006457 5.7e-58 228.0 180 67.8
SGA_v2.0_scaffold258G45797 Striga asiatica HOM05D005249 ORTHO05D006457 5.7e-58 228.0 186 69.4
TAR624G0120 Trochodendron aralioides HOM05D005249 ORTHO05D006457 5.7e-58 228.0 185 67.6
MSTRG.15162 Avicennia marina HOM05D005249 ORTHO05D006457 7.4e-58 227.6 184 69.6
MELO3C025397.2 Cucumis melo HOM05D005249 ORTHO05D006457 9.6e-58 227.3 179 66.5
Ciclev10009689m.g Citrus clementina HOM05D005249 ORTHO05D006457 1.3e-57 226.9 182 68.1
TWI38G0945 Tripterygium wilfordii HOM05D005249 ORTHO05D006457 2.1e-57 226.1 183 67.8
Lalb_Chr15g0080371 Lupinus albus HOM05D005249 ORTHO05D006457 2.8e-57 225.7 182 69.2
CiPaw.11G187100 Carya illinoinensis HOM05D005249 ORTHO05D006457 3.7e-57 225.3 182 67.0
arahy.Tifrunner.gnm1.ann1.EK5LIC Arachis hypogaea HOM05D005249 ORTHO05D006457 6.2e-57 224.6 187 66.8
A05p28310 Brassica napus HOM05D005249 ORTHO05D006457 6.2e-57 224.6 172 72.1
BraA05t21713Z Brassica rapa HOM05D005249 ORTHO05D006457 6.2e-57 224.6 172 72.1
BolC5t33095H Brassica oleracea HOM05D005249 ORTHO05D006457 1.4e-56 223.4 186 69.4
Carub.0001s3985 Capsella rubella HOM05D005249 ORTHO05D006457 1.4e-56 223.4 182 68.1
arahy.Tifrunner.gnm1.ann1.I048YJ Arachis hypogaea HOM05D005249 ORTHO05D006457 1.8e-56 223.0 187 67.4
Thecc.07G044000 Theobroma cacao HOM05D005249 ORTHO05D006457 1.8e-56 223.0 182 65.9
Oeu062605.1 Olea europaea HOM05D005249 ORTHO05D006457 2.4e-56 222.6 194 64.4
THA.LOC104798778 Tarenaya hassleriana HOM05D005249 ORTHO05D006457 2.4e-56 222.6 182 64.8
MD03G1207700 Malus domestica HOM05D005249 ORTHO05D006457 3.1e-56 222.2 182 67.6
PGR031G1044 Punica granatum HOM05D005249 ORTHO05D006457 9.0e-56 220.7 182 67.0
Gohir.D05G366500 Gossypium hirsutum HOM05D005249 ORTHO05D006457 1.2e-55 220.3 182 65.4
AT1G50900 Arabidopsis thaliana HOM05D005249 ORTHO05D006457 2.0e-55 219.5 172 69.8
Thhalv10021639m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 2.0e-55 219.5 185 68.1
AL8G37450 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 3.4e-55 218.8 172 69.8
Sp3g18550 Schrenkiella parvula HOM05D005249 ORTHO05D006457 3.4e-55 218.8 187 69.0
Aqoxy1G03622 Aquilegia oxysepala HOM05D005249 ORTHO05D006457 4.5e-55 218.4 187 66.3
A06p02830 Brassica napus HOM05D005249 ORTHO05D006457 4.5e-55 218.4 181 68.0
BraA06t23490Z Brassica rapa HOM05D005249 ORTHO05D006457 4.5e-55 218.4 181 68.0
Aa31LG10G3330 Aethionema arabicum HOM05D005249 ORTHO05D006457 5.8e-55 218.0 183 66.1
C05p43800 Brassica napus HOM05D005249 ORTHO05D006457 5.8e-55 218.0 185 67.0
COL.COLO4_09631 Corchorus olitorius HOM05D005249 ORTHO05D006457 5.8e-55 218.0 182 67.0
A05p19870 Brassica napus HOM05D005249 ORTHO05D006457 7.6e-55 217.6 172 69.8
BraA05t20892Z Brassica rapa HOM05D005249 ORTHO05D006457 7.6e-55 217.6 172 69.8
Duzib213G0461 Durio zibethinus HOM05D005249 ORTHO05D006457 7.6e-55 217.6 182 67.0
AL1G58630 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 1.0e-54 217.2 172 70.3
VMungo0540G0590 Vigna mungo HOM05D005249 ORTHO05D006457 1.0e-54 217.2 182 66.5
BcaC08g43263 Brassica carinata HOM05D005249 ORTHO05D006457 1.3e-54 216.9 176 67.6
C06p06070 Brassica napus HOM05D005249 ORTHO05D006457 1.3e-54 216.9 176 67.6
BolC6t35720H Brassica oleracea HOM05D005249 ORTHO05D006457 1.3e-54 216.9 176 67.6
Cpa.g.sc97.36 Carica papaya HOM05D005249 ORTHO05D006457 1.3e-54 216.9 173 68.8
Sp1g37640 Schrenkiella parvula HOM05D005249 ORTHO05D006457 1.7e-54 216.5 182 67.6
Ah.06g182920 Amaranthus hybridus HOM05D005249 ORTHO05D006457 2.2e-54 216.1 185 67.6
AUR62015702 Chenopodium quinoa HOM05D005249 ORTHO05D006457 2.2e-54 216.1 179 66.5
BcaB07g33531 Brassica carinata HOM05D005249 ORTHO05D006457 3.8e-54 215.3 176 67.6
Carub.0003s2051 Capsella rubella HOM05D005249 ORTHO05D006457 3.8e-54 215.3 184 67.9
Eucgr.F03446 Eucalyptus grandis HOM05D005249 ORTHO05D006457 3.8e-54 215.3 182 67.0
Psat5g216840 Pisum sativum HOM05D005249 ORTHO05D006457 6.5e-54 214.5 184 65.8
Rhsim04G0001800 Rhododendron simsii HOM05D005249 ORTHO05D006457 1.1e-53 213.8 191 67.5
AUR62020502 Chenopodium quinoa HOM05D005249 ORTHO05D006457 1.4e-53 213.4 179 66.5
Ca_08298_v3 Cicer arietinum L. HOM05D005249 ORTHO05D006457 1.4e-53 213.4 186 66.7
Glyma.08G312800 Glycine max HOM05D005249 ORTHO05D006457 2.5e-53 212.6 185 66.5
HanXRQChr05g0159111 Helianthus annuus HOM05D005249 ORTHO05D006457 2.5e-53 212.6 181 64.1
Manes.15G073900 Manihot esculenta HOM05D005249 ORTHO05D006457 2.5e-53 212.6 183 66.7
Actinidia05108 Actinidia chinensis HOM05D005249 ORTHO05D006457 3.2e-53 212.2 183 67.2
Actinidia09913 Actinidia chinensis HOM05D005249 ORTHO05D006457 3.2e-53 212.2 183 67.2
PSO210G5271 Papaver somniferum HOM05D005249 ORTHO05D006457 3.2e-53 212.2 184 64.1
unitig_578.g16003 Utricularia gibba HOM05D005249 ORTHO05D006457 3.2e-53 212.2 163 66.9
Thhalv10011819m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 4.2e-53 211.8 170 69.4
Phvul.006G038600 Phaseolus vulgaris HOM05D005249 ORTHO05D006457 5.5e-53 211.5 182 63.7
Glyma.18G102100 Glycine max HOM05D005249 ORTHO05D006457 7.1e-53 211.1 183 67.2
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 7.1e-53 211.1 129 82.2
C05p33210 Brassica napus HOM05D005249 ORTHO05D006457 9.3e-53 210.7 169 68.6
ECA246G1486 Erigeron canadensis HOM05D005249 ORTHO05D006457 9.3e-53 210.7 177 67.2
Lj6g0004310 Lotus japonicus HOM05D005249 ORTHO05D006457 9.3e-53 210.7 181 64.1
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 1.6e-52 209.9 182 66.5
MBI02_g28338_MAGBIO Magnolia biondii HOM05D005249 ORTHO05D006457 2.1e-52 209.5 186 64.5
Medtr3g019320 Medicago truncatula HOM05D005249 ORTHO05D006457 2.7e-52 209.1 184 64.1
PSO832G4498 Papaver somniferum HOM05D005249 ORTHO05D006457 2.7e-52 209.1 184 63.0
Sabra16G0285800 Salix brachista HOM05D005249 ORTHO05D006457 2.7e-52 209.1 182 65.9
Gohir.A04G019300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 6.1e-52 208.0 173 64.7
Potri.001G420900 Populus trichocarpa HOM05D005249 ORTHO05D006457 6.1e-52 208.0 182 65.9
Manes.03G127000 Manihot esculenta HOM05D005249 ORTHO05D006457 7.9e-52 207.6 183 65.0
Nn1g07102 Nelumbo nucifera HOM05D005249 ORTHO05D006457 5.1e-51 204.9 186 61.3
EL10Ac4g07899 Beta vulgaris HOM05D005249 ORTHO05D006457 3.3e-50 202.2 181 66.9
Sc16g0006280 Simmondsia chinensis HOM05D005249 ORTHO05D006457 9.7e-50 200.7 187 61.0
Gorai.009G425200 Gossypium raimondii HOM05D005249 ORTHO05D006457 4.8e-49 198.4 222 53.2
Atru.chr2.3277 Acer truncatum HOM05D005249 ORTHO05D006457 8.2e-49 197.6 121 79.3
ATR0752G229 Amborella trichopoda HOM05D005249 ORTHO05D006457 1.5e-47 193.4 157 66.2
FAN16G3206 Fragaria x ananassa HOM05D005249 ORTHO05D006340 2.6e-47 192.6 292 44.5
BcaB02g11192 Brassica carinata HOM05D005249 ORTHO05D006457 1.7e-46 189.9 182 62.1
Dinv40734 Davidia involucrata HOM05D005249 ORTHO05D006457 2.2e-46 189.5 152 67.8
FAN11G3900 Fragaria x ananassa HOM05D005249 ORTHO05D006340 2.9e-46 189.1 292 44.2
CDE05G2685 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 3.8e-46 188.7 113 80.5
Zm00001eb322850 Zea mays HOM05D005249 ORTHO05D006457 5.0e-46 188.3 190 58.4
CDE05G0273 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 6.5e-46 188.0 182 57.1
SEGI_08050 Sequoiadendron giganteum HOM05D005249 ORTHO05D006457 1.2e-44 183.7 113 77.0
BcaB07g33530 Brassica carinata HOM05D005249 ORTHO05D006457 2.7e-44 182.6 150 68.0
CDE11G0574 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 3.0e-43 179.1 173 56.6
Os07g0520800 Oryza sativa ssp. japonica HOM05D005249 ORTHO05D006457 6.7e-43 177.9 136 69.1
HPP92_017607 Vanilla planifolia HOM05D005249 ORTHO05D006457 9.7e-42 174.1 186 55.9
SMO137G0373 Selaginella moellendorffii HOM05D005249 ORTHO05D006457 2.2e-41 172.9 147 60.5
vmacro09735 Vaccinium macrocarpon HOM05D005249 ORTHO05D006457 3.1e-40 169.1 217 53.0
CBR_g12744 Chara braunii HOM05D005249 ORTHO05D006457 3.8e-38 162.2 126 67.5
CARHR096310 Cardamine hirsuta HOM05D005249 ORTHO05D006457 5.7e-34 148.3 87 85.1
Pp3c5_16520 Physcomitrium patens HOM05D005249 ORTHO05D006457 9.7e-34 147.5 171 48.5
Rhsim04G0000700 Rhododendron simsii HOM05D005249 ORTHO05D006457 9.7e-34 147.5 87 83.9
Mapoly0006s0110 Marchantia polymorpha HOM05D005249 ORTHO05D006457 1.7e-33 146.7 139 58.3
FAN21G3293 Fragaria x ananassa HOM05D005249 ORTHO05D006457 2.2e-33 146.4 82 91.5
CARHR040950 Cardamine hirsuta HOM05D005249 ORTHO05D006457 6.3e-33 144.8 87 81.6
Cfa020388 Carpinus fangiana HOM05D005249 ORTHO05D006457 1.8e-32 143.3 82 86.6
BcaB06g26188 Brassica carinata HOM05D005249 ORTHO05D006457 3.1e-32 142.5 180 52.8
PRCOL_00000858 Prasinoderma coloniale HOM05D005249 ORTHO05D006457 1.7e-30 136.7 100 64.0
TPR.G3850 Trifolium pratense HOM05D005249 ORTHO05D006457 8.5e-30 134.4 82 84.1
Cre12.g551950 Chlamydomonas reinhardtii HOM05D005249 ORTHO05D006457 1.0e-27 127.5 108 54.6
Glyma.09G102000 Glycine max HOM05D005249 ORTHO05D006457 1.1e-26 124.0 87 75.9
MCO16G329 Micromonas commoda HOM05D005249 ORTHO05D006457 3.3e-26 122.5 100 56.0
Atru.chr2.3276 Acer truncatum HOM05D005249 ORTHO05D006457 4.5e-15 85.5 54 74.1
BcaC05g27382 Brassica carinata HOM05D005249 ORTHO05D006457 3.8e-14 82.4 54 77.8
CARHR040940 Cardamine hirsuta HOM05D005249 ORTHO05D006457 5.0e-14 82.0 96 55.2
Nn1g07101 Nelumbo nucifera HOM05D005249 ORTHO05D006457 1.2e-12 77.4 99 47.5
CARHR096330 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.4e-11 73.9 83 51.8
BcaC05g27384 Brassica carinata HOM05D005249 ORTHO05D006457 2.3e-11 73.2 86 54.7
CBR_g602 Chara braunii HOM05D005249 ORTHO05D006457 8.8e-11 71.2 63 49.2
Hund02097 Selenicereus undatus HOM05D000420 ORTHO05D000110 2.8e-09 66.2 75 52.0
Ah.04g165680 Amaranthus hybridus HOM05D005769 ORTHO05D006851 4.5e-07 58.9 41 73.2
RcHm_v2.0_Chr5g0038161 Rosa chinensis HOM05D000371 ORTHO05D006340 4.5e-07 58.9 95 46.3


User provided reference genes

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