Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 5.5e-237 823.9 424 100.0
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 3.8e-161 572.0 322 94.7
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 2.8e-140 502.7 338 80.8
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 4.5e-138 495.4 325 82.2
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 3.8e-137 492.3 324 82.4
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 2.0e-133 479.9 323 82.4
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 1.8e-115 420.2 324 72.8
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 1.9e-75 287.3 345 51.0
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 5.4e-75 285.8 327 53.8
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 1.1e-72 278.1 326 52.1
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 5.2e-70 269.2 328 50.6
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 1.1e-67 261.5 323 49.5
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 2.7e-66 256.9 268 55.6
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 3.5e-66 256.5 324 52.2
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 1.0e-65 255.0 279 54.1
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 1.3e-65 254.6 332 47.3
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 8.7e-65 251.9 298 52.0
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 1.1e-64 251.5 295 51.2
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 2.5e-64 250.4 337 49.3
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 4.3e-64 249.6 309 49.8
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 4.3e-64 249.6 336 49.1
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 2.8e-63 246.9 349 47.0
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 6.2e-63 245.7 344 46.8
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 1.1e-62 245.0 352 49.4
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 4.4e-61 239.6 268 53.0
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 9.9e-61 238.4 335 44.5
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 9.9e-61 238.4 341 44.6
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 9.9e-61 238.4 253 52.2
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 4.9e-60 236.1 335 44.5
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 2.4e-59 233.8 268 50.0
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 2.4e-59 233.8 325 47.1
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 5.4e-59 232.6 335 44.2
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 7.1e-59 232.3 339 44.5
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 9.3e-59 231.9 310 47.4
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 9.3e-59 231.9 270 49.6
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 9.3e-59 231.9 266 50.0
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 9.3e-59 231.9 327 46.2
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 9.3e-59 231.9 271 49.8
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 3.5e-58 229.9 267 49.8
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 6.0e-58 229.2 311 46.0
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 5.1e-57 226.1 316 48.1
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 6.6e-57 225.7 325 44.6
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 8.7e-57 225.3 332 43.7
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 1.1e-56 224.9 299 49.2
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 3.3e-56 223.4 325 43.7
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 2.1e-55 220.7 336 46.4
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 2.8e-55 220.3 304 48.0
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 2.8e-55 220.3 325 43.4
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 4.8e-55 219.5 266 50.4
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 6.2e-55 219.2 315 45.4
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 8.1e-55 218.8 336 44.0
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 1.1e-54 218.4 335 42.1
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 1.4e-54 218.0 273 50.5
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 6.9e-54 215.7 286 49.0
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 6.9e-54 215.7 293 45.7
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 3.4e-53 213.4 223 59.2
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 5.8e-53 212.6 261 51.7
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 1.3e-52 211.5 234 56.0
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 2.2e-52 210.7 292 49.0
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 3.8e-52 209.9 290 49.3
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 4.9e-52 209.5 206 61.2
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 8.4e-52 208.8 330 44.2
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 1.4e-51 208.0 290 47.6
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 4.2e-51 206.5 330 45.5
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 4.2e-51 206.5 289 45.3
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 9.3e-51 205.3 287 48.1
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 1.6e-50 204.5 236 51.7
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 1.6e-50 204.5 341 42.5
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 2.1e-50 204.1 342 40.9
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 3.5e-50 203.4 327 41.3
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 2.3e-49 200.7 322 45.7
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 3.0e-49 200.3 275 47.6
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 5.1e-49 199.5 343 40.5
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 5.1e-49 199.5 255 48.6
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 9.6e-48 195.3 223 57.0
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 8.1e-47 192.2 173 65.9
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 8.1e-47 192.2 271 48.0
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.1e-46 191.8 273 45.8
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 5.3e-46 189.5 344 41.3
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 5.3e-46 189.5 323 41.8
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 9.0e-46 188.7 350 40.3
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 1.2e-45 188.3 258 47.3
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 1.2e-45 188.3 331 41.4
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 1.5e-45 188.0 284 46.8
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 7.6e-45 185.7 337 40.7
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 7.1e-43 179.1 329 40.7
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 1.2e-42 178.3 331 44.7
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 1.6e-42 177.9 363 39.1
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 4.6e-42 176.4 176 60.2
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 1.0e-41 175.3 293 45.4
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 2.3e-41 174.1 274 45.3
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 2.3e-41 174.1 329 40.1
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 3.9e-41 173.3 393 35.9
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 5.1e-41 172.9 265 47.9
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 2.8e-39 167.2 244 48.4
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 2.8e-39 167.2 320 41.6
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 3.7e-39 166.8 314 42.7
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 3.7e-39 166.8 314 41.1
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 6.2e-39 166.0 238 48.7
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 8.2e-39 165.6 285 43.5
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 5.3e-38 162.9 358 38.3
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 9.0e-38 162.2 290 42.4
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 9.0e-38 162.2 327 38.2
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 1.5e-37 161.4 221 51.1
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 4.5e-37 159.8 247 48.2
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 5.8e-37 159.5 333 40.8
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 5.8e-37 159.5 301 42.9
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 5.8e-37 159.5 301 42.9
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 5.8e-37 159.5 301 42.9
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 7.6e-37 159.1 325 39.1
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 1.4e-35 154.8 263 46.8
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 1.4e-35 154.8 293 39.6
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 2.5e-35 154.1 282 42.6
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 7.1e-35 152.5 245 46.5
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 1.6e-34 151.4 311 40.5
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 1.6e-34 151.4 311 40.5
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 3.5e-34 150.2 309 41.1
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 3.5e-34 150.2 309 41.1
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 3.5e-34 150.2 309 41.1
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 4.6e-34 149.8 296 41.6
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 9.7e-32 142.1 238 45.0
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 1.3e-31 141.7 259 40.9
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 1.3e-31 141.7 374 34.0
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 4.8e-31 139.8 298 39.6
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 4.8e-31 139.8 298 39.6
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 6.9e-30 136.0 277 40.8
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 1.5e-29 134.8 254 42.1
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 9.4e-27 125.6 338 36.7
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 2.7e-26 124.0 323 37.5
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 2.3e-25 120.9 210 41.4
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 6.7e-25 119.4 199 41.2
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 8.8e-25 119.0 309 35.0
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.1e-24 118.6 219 43.8
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 9.7e-24 115.5 327 33.9
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.4e-22 111.7 178 48.3
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 1.0e-20 105.5 225 37.8
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 2.9e-20 104.0 234 43.2
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 2.0e-16 91.3 133 42.1
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 2.6e-16 90.9 178 41.6
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 1.4e-09 68.6 139 39.6
Actinidia37514 Actinidia chinensis HOM05D000378 ORTHO05D006084 8.2e-07 59.3 120 40.8


User provided reference genes

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