Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004950g0050 Nicotiana tabacum HOM05D002653 ORTHO05D002623 4.7e-20 100.1 47 100.0
Nitab4.5_0004950g0030 Nicotiana tabacum HOM05D002653 ORTHO05D002623 2.8e-17 90.9 47 89.4
Nitab4.5_0006025g0020 Nicotiana tabacum HOM05D002653 ORTHO05D002623 8.5e-14 79.3 37 97.3
Nitab4.5_0004202g0010 Nicotiana tabacum HOM05D002653 ORTHO05D002623 3.2e-13 77.4 37 94.6
Peaxi162Scf00126g00051 Petunia axillaris HOM05D002653 ORTHO05D002623 7.2e-13 76.3 37 94.6
Nitab4.5_0002474g0040 Nicotiana tabacum HOM05D002653 ORTHO05D002623 9.4e-13 75.9 37 91.9
Nitab4.5_0020732g0010 Nicotiana tabacum HOM05D002653 ORTHO05D002623 9.4e-13 75.9 37 91.9
CAN.G690.1 Capsicum annuum HOM05D002653 ORTHO05D002623 1.6e-12 75.1 37 91.9
Solyc11g045140.1 Solanum lycopersicum HOM05D002653 ORTHO05D002623 2.1e-12 74.7 37 89.2
Sopen11g020620 Solanum pennellii HOM05D002653 ORTHO05D002623 2.1e-12 74.7 37 89.2
unitig_8.g3109 Utricularia gibba HOM05D002653 ORTHO05D002623 6.8e-11 69.7 39 74.4
CANSAT01G2419 Cannabis sativa HOM05D002653 ORTHO05D002623 3.4e-10 67.4 36 80.6
Cfa016258 Carpinus fangiana HOM05D002653 ORTHO05D002623 3.4e-10 67.4 37 75.7
DCAR_018920 Daucus carota HOM05D002653 ORTHO05D002623 4.4e-10 67.0 37 75.7
Manes.09G076300 Manihot esculenta HOM05D002653 ORTHO05D002623 4.4e-10 67.0 37 81.1
Manes.11G165700 Manihot esculenta HOM05D002653 ORTHO05D002623 4.4e-10 67.0 37 81.1
CiPaw.06G000200 Carya illinoinensis HOM05D002653 ORTHO05D002623 5.7e-10 66.6 36 77.8
Hma1.2p1_1074F.1_g254380 Hydrangea macrophylla HOM05D002653 ORTHO05D002623 5.7e-10 66.6 37 73.0
Lsat_1_v5_gn_6_56501 Lactuca sativa HOM05D002653 ORTHO05D002623 5.7e-10 66.6 37 73.0
Lsat_1_v5_gn_8_5081 Lactuca sativa HOM05D002653 ORTHO05D002623 5.7e-10 66.6 37 73.0
Rhsim13G0127300 Rhododendron simsii HOM05D002653 ORTHO05D002623 5.7e-10 66.6 37 73.0
vmacro03484 Vaccinium macrocarpon HOM05D002653 ORTHO05D002623 5.7e-10 66.6 37 73.0
MSTRG.8096 Avicennia marina HOM05D002653 ORTHO05D002623 9.8e-10 65.9 37 73.0
GSVIVG01019371001 Vitis vinifera HOM05D002653 ORTHO05D002623 9.8e-10 65.9 37 73.0
ECA233G1976 Erigeron canadensis HOM05D002653 ORTHO05D002623 1.3e-09 65.5 37 73.0
FAN05G4926 Fragaria x ananassa HOM05D002653 ORTHO05D002623 1.3e-09 65.5 36 72.2
MD17G1156800 Malus domestica HOM05D002653 ORTHO05D002623 1.3e-09 65.5 37 75.7
EL10Ac1g01415 Beta vulgaris HOM05D002653 ORTHO05D002623 1.7e-09 65.1 36 75.0
Migut.L00787 Erythranthe guttata HOM05D002653 ORTHO05D002623 1.7e-09 65.1 36 75.0
Migut.L00841 Erythranthe guttata HOM05D002653 ORTHO05D002623 1.7e-09 65.1 36 75.0
Oeu013190.1 Olea europaea HOM05D002653 ORTHO05D002623 1.7e-09 65.1 37 75.7
Dinv38369 Davidia involucrata HOM05D002653 ORTHO05D002623 2.8e-09 64.3 37 70.3
Manes.12G000066 Manihot esculenta HOM05D002653 ORTHO05D002623 2.8e-09 64.3 35 82.9
FvH4_6g36300 Fragaria vesca HOM05D002653 ORTHO05D002623 3.7e-09 63.9 37 67.6
FAN02G0462 Fragaria x ananassa HOM05D002653 ORTHO05D002623 3.7e-09 63.9 37 67.6
FAN09G4442 Fragaria x ananassa HOM05D002653 ORTHO05D002623 3.7e-09 63.9 37 67.6
FAN14G0870 Fragaria x ananassa HOM05D002653 ORTHO05D002623 3.7e-09 63.9 37 67.6
FAN14G5588 Fragaria x ananassa HOM05D002653 ORTHO05D002623 3.7e-09 63.9 37 67.6
Cc11_g00310 Coffea canephora HOM05D002653 ORTHO05D002623 6.3e-09 63.2 37 73.0
Sed0013773 Sechium edule HOM05D002653 ORTHO05D002623 6.3e-09 63.2 37 67.6
MELO3C010033.2 Cucumis melo HOM05D002653 ORTHO05D002623 8.3e-09 62.8 36 72.2
CsaV3_1G044340 Cucumis sativus L. HOM05D002653 ORTHO05D002623 8.3e-09 62.8 36 72.2
Thhalv10003500m.g Eutrema salsugineum HOM05D002653 ORTHO05D002623 8.3e-09 62.8 37 75.7
Sc15g0007450 Simmondsia chinensis HOM05D002653 ORTHO05D002623 8.3e-09 62.8 36 69.4
Carub.0006s2259 Capsella rubella HOM05D002653 ORTHO05D002623 1.1e-08 62.4 37 75.7
HanXRQChr07g0186761 Helianthus annuus HOM05D002653 ORTHO05D002623 1.1e-08 62.4 37 70.3
Nn7g37406 Nelumbo nucifera HOM05D002653 ORTHO05D002623 1.1e-08 62.4 36 72.2
AL6G36330 Arabidopsis lyrata HOM05D002653 ORTHO05D002623 1.4e-08 62.0 37 73.0
Sabra16G0308200 Salix brachista HOM05D002653 ORTHO05D002623 1.8e-08 61.6 38 65.8
Aa31LG11G3960 Aethionema arabicum HOM05D002653 ORTHO05D002623 3.1e-08 60.8 37 73.0
CSS0026519 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 3.1e-08 60.8 37 67.6
CSS0038262 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 3.1e-08 60.8 37 67.6
PGR044G0026 Punica granatum HOM05D002653 ORTHO05D002623 3.1e-08 60.8 37 70.3
TWI34G1636 Tripterygium wilfordii HOM05D002653 ORTHO05D002623 3.1e-08 60.8 37 73.0
BcaNung01253 Brassica carinata HOM05D002653 ORTHO05D002623 4.1e-08 60.5 37 64.9
Zm00001eb260910 Zea mays HOM05D002653 ORTHO05D002623 4.1e-08 60.5 36 66.7
A06p35550 Brassica napus HOM05D002653 ORTHO05D002623 5.4e-08 60.1 37 64.9
BraA06t26480Z Brassica rapa HOM05D002653 ORTHO05D002623 5.4e-08 60.1 37 64.9
Potri.001G455600 Populus trichocarpa HOM05D002653 ORTHO05D002623 5.4e-08 60.1 38 63.2
C07p42990 Brassica napus HOM05D002653 ORTHO05D002623 7.0e-08 59.7 37 62.2
BolC7t44828H Brassica oleracea HOM05D002653 ORTHO05D002623 7.0e-08 59.7 37 62.2
Ciclev10012577m.g Citrus clementina HOM05D002653 ORTHO05D002623 7.0e-08 59.7 37 75.7
Prupe.3G028500 Prunus persica HOM05D002653 ORTHO05D002623 1.6e-07 58.5 37 67.6
CDE12G0934 Ceratophyllum demersum HOM05D002653 ORTHO05D002623 2.7e-07 57.8 36 66.7
RcHm_v2.0_Chr2g0148301 Rosa chinensis HOM05D002653 ORTHO05D002623 2.7e-07 57.8 37 62.2
Eucgr.K01358 Eucalyptus grandis HOM05D002653 ORTHO05D002623 3.5e-07 57.4 37 67.6
AT5G24740 Arabidopsis thaliana HOM05D002653 ORTHO05D002623 5.9e-07 56.6 37 67.6
arahy.Tifrunner.gnm1.ann1.G9A448 Arachis hypogaea HOM05D002653 ORTHO05D002623 1.3e-06 55.5 37 70.3
ClCG03G010430 Citrullus lanatus HOM05D002653 ORTHO05D002623 1.3e-06 55.5 35 68.6
PSO063G3289 Papaver somniferum HOM05D002653 ORTHO05D002623 1.7e-06 55.1 36 69.4
PSO782G1285 Papaver somniferum HOM05D002653 ORTHO05D002623 1.7e-06 55.1 36 69.4
Pp3c15_25690 Physcomitrium patens HOM05D002653 ORTHO05D002623 2.9e-06 54.3 34 58.8
Medtr2g007250 Medicago truncatula HOM05D002653 ORTHO05D002623 3.8e-06 53.9 36 69.4
QL04p064992 Quercus lobata HOM05D002653 ORTHO05D002623 3.8e-06 53.9 37 64.9
SMO353G0260 Selaginella moellendorffii HOM05D002653 ORTHO05D002623 3.8e-06 53.9 36 58.3
Glyma.13G174600 Glycine max HOM05D002653 ORTHO05D002623 5.0e-06 53.5 37 67.6
Phvul.002G234312 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 5.0e-06 53.5 37 67.6
Phvul.002G328604 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 5.0e-06 53.5 37 67.6
Psat5g290960 Pisum sativum HOM05D000001 ORTHO05D001705 5.0e-06 53.5 37 64.9
TPR.G8155 Trifolium pratense HOM05D002653 ORTHO05D002623 5.0e-06 53.5 37 64.9
VMungo0251G2657 Vigna mungo HOM05D002653 ORTHO05D002623 5.0e-06 53.5 37 67.6
ATR1155G033 Amborella trichopoda HOM05D002653 ORTHO05D002623 6.5e-06 53.1 36 55.6
CBR_g4651 Chara braunii HOM05D002653 ORTHO05D002623 6.5e-06 53.1 36 50.0
Os08g0116700 Oryza sativa ssp. japonica HOM05D002653 ORTHO05D002623 6.5e-06 53.1 36 52.8
LjContig00141g0016117 Lotus japonicus HOM05D002653 ORTHO05D002623 8.5e-06 52.8 37 67.6
Lalb_Chr01g0009381 Lupinus albus HOM05D002653 ORTHO05D002623 8.5e-06 52.8 37 67.6


User provided reference genes

Program Settings