Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 0.0e+00 1115.5 564 100.0
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 1.0e-267 926.4 574 83.8
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 1.3e-262 909.4 567 83.6
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 9.2e-256 886.7 568 81.7
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 2.1e-247 859.0 492 88.2
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 1.8e-219 766.1 568 74.5
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 1.9e-213 746.1 503 73.8
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 1.9e-213 746.1 499 75.2
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 5.3e-211 738.0 509 72.9
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 2.0e-210 736.1 560 68.6
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 3.4e-210 735.3 543 68.9
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 5.9e-210 734.6 502 73.3
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 1.3e-209 733.4 502 72.9
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 2.9e-209 732.3 504 72.6
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 3.8e-209 731.9 527 70.6
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 3.2e-208 728.8 568 66.4
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 4.2e-208 728.4 571 66.5
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 7.2e-208 727.6 565 66.9
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 2.1e-207 726.1 580 66.6
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 3.6e-207 725.3 500 73.0
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 1.3e-206 723.4 577 66.0
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 1.3e-206 723.4 572 65.6
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 1.8e-206 723.0 504 71.2
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 5.1e-206 721.5 503 71.2
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 6.7e-206 721.1 505 72.1
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 8.8e-206 720.7 476 75.8
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.9e-205 719.5 506 71.9
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 1.1e-203 713.8 483 73.5
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 4.1e-203 711.8 492 73.0
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 1.5e-202 709.9 566 64.5
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 2.6e-202 709.1 503 70.4
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 3.4e-202 708.8 572 65.0
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 4.5e-202 708.4 518 69.3
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 3.8e-201 705.3 519 68.6
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.1e-200 703.7 572 65.2
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 1.4e-200 703.4 563 65.5
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 2.5e-200 702.6 502 69.5
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 7.2e-200 701.0 579 64.9
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 2.1e-199 699.5 502 69.5
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 2.1e-199 699.5 576 64.8
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 2.7e-199 699.1 566 65.4
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 1.8e-198 696.4 508 69.3
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 1.8e-198 696.4 506 69.8
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 3.9e-198 695.3 504 70.8
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 5.1e-198 694.9 568 64.4
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 5.1e-198 694.9 523 67.3
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 5.1e-198 694.9 564 64.2
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 2.2e-196 689.5 566 63.3
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 2.2e-196 689.5 535 64.5
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 3.7e-196 688.7 563 64.1
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 3.7e-196 688.7 504 70.6
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 4.8e-196 688.3 585 62.9
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 6.3e-196 688.0 484 69.4
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 1.1e-195 687.2 564 63.7
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 1.1e-195 687.2 490 70.0
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 2.4e-195 686.0 535 64.5
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 2.4e-195 686.0 556 62.6
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 4.1e-195 685.3 481 71.1
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 5.3e-195 684.9 477 70.0
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.5e-194 683.3 625 60.3
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 2.0e-194 682.9 463 74.7
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 3.4e-194 682.2 491 68.6
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 4.5e-194 681.8 566 62.9
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 4.5e-194 681.8 484 69.4
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 4.5e-194 681.8 508 67.5
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 7.7e-194 681.0 481 69.9
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 1.3e-193 680.2 523 65.8
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 5.0e-193 678.3 535 64.1
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 6.5e-193 677.9 572 64.3
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 2.5e-192 676.0 484 68.4
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 2.5e-192 676.0 484 68.4
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 3.2e-192 675.6 533 64.9
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 4.2e-192 675.2 508 66.7
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 4.2e-192 675.2 487 69.4
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 5.5e-192 674.9 484 68.4
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 7.2e-192 674.5 484 68.4
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 9.4e-192 674.1 572 62.4
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.2e-191 673.7 561 63.8
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 1.2e-191 673.7 567 61.7
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 2.1e-191 672.9 477 71.9
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 6.1e-191 671.4 562 63.7
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 1.4e-190 670.2 563 62.2
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 3.9e-190 668.7 483 68.5
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 3.9e-190 668.7 556 61.2
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 5.2e-190 668.3 565 63.0
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 5.2e-190 668.3 472 70.1
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 5.7e-189 664.8 546 60.6
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.1e-187 660.6 508 66.9
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.1e-187 660.6 508 66.9
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 4.1e-187 658.7 565 61.4
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 9.1e-187 657.5 499 67.1
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 3.5e-186 655.6 493 63.7
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 7.7e-186 654.4 567 61.6
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 1.3e-185 653.7 497 63.6
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.7e-185 653.3 499 67.5
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 1.5e-184 650.2 535 61.9
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.2e-184 649.0 508 65.9
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 7.2e-184 647.9 535 61.7
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 2.7e-183 646.0 519 63.2
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 1.0e-182 644.0 477 65.0
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.3e-182 642.9 562 62.1
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.2e-181 640.6 533 60.6
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 5.7e-181 638.3 482 64.3
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 1.3e-180 637.1 555 58.4
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 1.8e-179 633.3 707 51.3
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.4e-179 632.9 462 66.9
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 5.9e-178 628.2 482 65.8
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 7.7e-178 627.9 497 61.4
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.5e-176 623.6 469 65.5
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.9e-176 623.2 508 63.8
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 9.4e-176 620.9 369 86.4
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 6.3e-172 608.2 485 63.7
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 1.1e-171 607.4 533 58.5
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 8.0e-167 591.3 608 55.4
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 5.9e-162 575.1 575 57.0
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.8e-159 566.2 472 59.1
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 4.9e-156 555.4 374 74.3
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 1.1e-150 537.7 371 73.3
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 4.4e-149 532.3 512 58.4
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 1.3e-145 520.8 568 52.3
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 2.5e-144 516.5 397 64.2
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 1.1e-139 501.1 499 51.9
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 2.1e-138 496.9 478 52.1
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.3e-137 494.2 467 55.7
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 1.1e-136 491.1 369 67.2
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 1.4e-131 474.2 417 61.4
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.3e-128 463.0 515 50.3
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 7.3e-128 461.8 389 62.5
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 2.1e-127 460.3 324 69.8
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 7.3e-120 435.3 296 72.3
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 6.2e-111 405.6 378 59.5
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 1.9e-107 394.0 495 46.3
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 5.5e-107 392.5 248 77.0
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 3.3e-104 383.3 289 65.7
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 2.1e-103 380.6 487 44.8
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 4.6e-98 362.8 309 62.5
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 6.7e-97 359.0 233 76.4
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 3.3e-96 356.7 302 61.3
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 3.8e-92 343.2 215 77.7
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 9.4e-91 338.6 259 67.6
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 7.9e-90 335.5 219 75.3
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 1.1e-86 325.1 464 40.3
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 2.2e-84 317.4 212 72.6
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.6e-82 311.2 331 51.4
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 4.5e-77 293.1 216 65.3
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 3.6e-74 283.5 282 50.4
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.7e-71 274.6 185 74.6
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 3.1e-70 270.4 188 72.9
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 1.7e-68 264.6 476 34.2
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.7e-63 248.1 458 34.9
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 3.6e-58 230.3 278 48.6
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 9.8e-56 222.2 188 63.8
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.4e-54 218.4 140 75.7
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 4.5e-53 213.4 170 63.5
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 2.8e-50 204.1 282 44.7
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 2.7e-37 161.0 114 65.8
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 3.5e-37 160.6 124 60.5
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 8.6e-36 156.0 125 62.4
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 2.5e-35 154.5 84 89.3
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 1.2e-32 145.6 139 48.9
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 1.7e-31 141.7 97 69.1
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 8.3e-31 139.4 153 50.3
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 3.2e-30 137.5 80 85.0
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 6.0e-29 133.3 76 82.9
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 1.1e-27 129.0 81 71.6
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 3.6e-26 124.0 102 64.7
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 1.4e-25 122.1 325 33.5
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 1.4e-25 122.1 164 46.3
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 7.6e-24 116.3 77 74.0
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 9.9e-24 115.9 324 30.6
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 1.2e-21 109.0 62 80.6
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 1.0e-20 105.9 63 76.2
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 1.7e-20 105.1 65 72.3
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 3.9e-20 104.0 85 63.5
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 1.2e-18 99.0 53 86.8
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 2.8e-18 97.8 92 55.4
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 3.6e-18 97.4 80 62.5
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 4.7e-18 97.1 102 50.0
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 2.6e-16 91.3 74 52.7
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 3.4e-16 90.9 72 56.9
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 1.5e-11 75.5 51 66.7
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 4.3e-11 73.9 163 36.8
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 9.6e-11 72.8 48 75.0
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.5e-08 65.5 110 38.2


User provided reference genes

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