Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1687.2 866 100.0
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1538.1 862 91.1
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1516.5 862 91.0
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1503.0 817 94.6
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1470.3 869 88.1
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1454.9 862 86.2
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1446.4 862 85.4
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1392.9 891 80.7
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 0.0e+00 1388.2 877 82.7
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1388.2 891 80.7
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1372.5 817 85.4
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1318.1 1017 69.7
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 0.0e+00 1290.0 875 77.1
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 0.0e+00 1277.7 873 75.9
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 0.0e+00 1273.8 870 75.3
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 0.0e+00 1271.9 878 76.0
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1269.6 877 75.7
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1256.5 708 89.1
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 0.0e+00 1246.9 872 75.1
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 0.0e+00 1245.3 866 73.8
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 0.0e+00 1243.0 874 74.1
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1239.9 868 74.4
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 0.0e+00 1239.6 873 74.0
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1233.4 855 75.3
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 0.0e+00 1222.2 925 70.7
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1212.2 871 72.9
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1210.3 886 71.6
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 0.0e+00 1208.4 868 73.2
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 0.0e+00 1208.0 864 72.7
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 0.0e+00 1208.0 880 71.4
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 0.0e+00 1205.3 873 72.5
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 0.0e+00 1204.9 876 72.3
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 0.0e+00 1203.3 867 71.0
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 0.0e+00 1203.3 863 72.7
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1202.6 872 72.4
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1200.7 865 73.1
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1200.3 870 71.7
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 0.0e+00 1199.5 869 71.6
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 0.0e+00 1199.1 867 72.5
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1198.7 865 72.9
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1198.7 866 72.1
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 0.0e+00 1198.0 835 73.9
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1198.0 878 72.0
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 0.0e+00 1197.2 864 72.2
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 0.0e+00 1196.8 876 71.3
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 0.0e+00 1196.4 864 71.9
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1193.3 881 71.5
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 0.0e+00 1191.0 878 72.0
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1189.9 867 71.7
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1187.6 870 73.0
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 0.0e+00 1186.0 867 71.2
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 0.0e+00 1186.0 912 68.5
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 0.0e+00 1186.0 896 70.0
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1184.1 867 71.5
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 0.0e+00 1183.3 876 70.5
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1180.2 898 69.6
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 0.0e+00 1178.7 880 70.1
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1177.2 867 71.3
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1175.6 876 70.4
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 0.0e+00 1174.1 902 69.3
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 0.0e+00 1173.3 906 68.2
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1171.0 863 71.7
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 0.0e+00 1170.6 873 70.4
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 0.0e+00 1167.5 906 68.2
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 0.0e+00 1167.5 901 68.7
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1167.1 878 69.8
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1167.1 910 67.1
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 0.0e+00 1166.4 869 70.0
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 0.0e+00 1166.4 868 70.2
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1165.6 879 69.4
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 0.0e+00 1165.6 928 66.9
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 0.0e+00 1162.9 899 68.6
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1162.5 869 70.4
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 0.0e+00 1162.1 888 68.8
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 0.0e+00 1160.6 862 70.9
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 0.0e+00 1160.2 910 67.7
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 0.0e+00 1157.9 880 68.6
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1154.4 902 68.2
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1153.7 902 68.1
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 0.0e+00 1153.3 911 67.7
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1152.9 896 68.0
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 0.0e+00 1152.5 881 68.0
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1144.4 918 66.8
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 0.0e+00 1139.0 971 65.0
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1138.3 880 68.8
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1137.5 918 66.3
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1137.1 920 65.5
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1136.7 917 65.2
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1134.8 883 67.7
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 0.0e+00 1131.3 874 68.2
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1129.4 895 67.6
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1128.2 895 67.5
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1127.5 895 67.5
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1125.9 880 68.2
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1124.4 876 68.5
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 0.0e+00 1122.1 935 64.3
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1121.3 894 67.8
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1119.0 860 67.7
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 0.0e+00 1108.2 817 71.4
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 0.0e+00 1094.7 865 65.7
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 0.0e+00 1094.0 832 70.1
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 0.0e+00 1093.6 866 68.1
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1092.0 903 65.4
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1091.3 903 65.4
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1089.7 892 65.5
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 0.0e+00 1088.9 825 69.3
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 2.4e-311 1072.0 590 90.5
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 5.9e-310 1067.4 844 66.5
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.1e-308 1063.1 821 68.0
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 6.7e-306 1053.9 866 65.1
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 1.1e-303 1046.6 864 66.2
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 7.2e-300 1033.9 757 70.0
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 3.0e-298 1028.5 868 61.6
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 3.2e-284 981.9 695 74.1
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 4.0e-274 948.3 899 59.8
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 3.1e-271 938.7 708 68.6
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 1.6e-262 909.8 719 68.4
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 1.9e-260 902.9 872 55.5
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 1.2e-259 900.2 870 60.0
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 2.0e-257 892.9 954 55.1
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 4.9e-256 888.3 908 53.1
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 2.8e-251 872.5 500 83.2
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 8.9e-242 840.9 853 53.6
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 9.2e-239 830.9 693 64.5
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 7.7e-185 651.7 640 58.1
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 1.2e-174 617.8 369 79.4
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.3e-173 613.6 380 77.4
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 1.6e-169 600.9 543 62.2
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 1.0e-165 588.2 348 82.5
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 4.0e-165 586.3 337 81.0
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.4e-162 577.0 357 77.0
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.0e-152 545.0 467 64.0
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 5.9e-145 519.2 531 57.4
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 9.5e-143 511.9 700 45.3
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 3.5e-137 493.4 858 37.6
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 1.7e-131 474.6 981 36.0
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 5.4e-122 443.0 303 71.9
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 2.0e-108 397.9 508 49.2
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 4.4e-108 396.7 297 67.3
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 7.6e-108 396.0 1035 31.7
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 5.3e-101 373.2 443 53.7
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 1.4e-90 338.6 600 39.8
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 5.5e-82 310.1 359 59.1
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 2.4e-69 268.1 163 79.1
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 2.2e-51 208.4 327 41.9
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 4.8e-46 190.7 147 75.5
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 2.1e-41 175.3 100 81.0
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 3.5e-36 157.9 103 76.7
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 6.6e-35 153.7 107 66.4
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 9.5e-34 149.8 102 71.6
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 7.0e-21 107.1 78 64.1
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 7.5e-15 87.0 86 51.2
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 2.9e-14 85.1 79 63.3
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 2.4e-13 82.0 86 50.0
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 4.1e-13 81.3 64 57.8
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 2.7e-12 78.6 93 57.0
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 6.6e-11 73.9 55 63.6
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 7.3e-10 70.5 43 83.7
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 1.2e-07 63.2 52 61.5
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 2.2e-06 58.9 53 58.5


User provided reference genes

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