Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 0.0e+00 1214.1 626 100.0
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 0.0e+00 1095.5 605 93.6
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 4.0e-276 954.5 608 81.2
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 5.2e-276 954.1 608 81.2
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 3.2e-273 944.9 608 80.9
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 5.6e-254 880.9 611 75.0
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 4.8e-253 877.9 610 77.4
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 1.3e-250 869.8 610 73.4
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 3.8e-250 868.2 636 72.5
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 2.3e-247 859.0 609 74.4
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 4.0e-244 848.2 633 71.6
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 6.9e-244 847.4 603 74.5
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 3.7e-229 798.5 617 70.5
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 1.4e-228 796.6 608 68.6
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 6.1e-224 781.2 622 68.5
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 3.9e-223 778.5 615 66.3
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 3.9e-223 778.5 585 70.1
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 4.8e-221 771.5 605 67.1
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 4.6e-216 755.0 609 65.5
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 1.1e-212 743.8 495 76.4
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 5.3e-212 741.5 614 64.5
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 6.9e-212 741.1 612 65.0
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 4.5e-211 738.4 615 63.9
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 2.2e-210 736.1 614 63.8
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 5.0e-210 734.9 601 64.2
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 1.1e-209 733.8 614 63.7
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 2.5e-209 732.6 614 63.5
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 3.6e-208 728.8 595 65.4
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 7.9e-208 727.6 608 64.1
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 1.1e-206 723.8 605 65.1
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 2.0e-206 723.0 616 63.1
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 4.4e-206 721.8 608 63.2
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 7.4e-206 721.1 611 64.3
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 4.8e-205 718.4 612 63.9
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 1.4e-204 716.8 612 64.5
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 4.1e-204 715.3 609 64.7
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 4.1e-204 715.3 621 61.2
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 5.9e-203 711.4 628 63.2
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 7.7e-203 711.1 534 68.0
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 1.3e-202 710.3 584 64.2
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 1.3e-202 710.3 505 73.5
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 2.2e-202 709.5 605 63.0
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 6.5e-202 708.0 609 63.1
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 8.5e-202 707.6 588 66.7
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 1.5e-201 706.8 634 62.3
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 1.9e-201 706.4 604 64.6
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 1.9e-201 706.4 590 65.9
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 7.2e-201 704.5 611 63.5
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 1.2e-200 703.7 503 73.6
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 2.7e-200 702.6 629 60.7
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 1.0e-199 700.7 641 60.4
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 2.0e-198 696.4 603 61.0
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 2.6e-198 696.0 593 61.7
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 7.5e-198 694.5 588 64.6
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 7.5e-198 694.5 592 65.5
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 3.7e-197 692.2 612 61.9
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 6.3e-197 691.4 585 64.1
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 1.4e-196 690.3 588 65.5
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 3.1e-196 689.1 595 65.4
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 3.1e-196 689.1 612 58.7
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 4.1e-196 688.7 592 61.8
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 5.3e-196 688.3 603 60.7
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 1.3e-194 683.7 598 61.5
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 1.3e-194 683.7 609 61.6
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 1.3e-194 683.7 608 59.7
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 2.2e-194 682.9 591 64.3
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 3.8e-194 682.2 608 61.8
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 1.1e-193 680.6 623 62.6
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 1.5e-193 680.2 615 62.6
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 1.9e-193 679.9 609 62.4
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 1.2e-192 677.2 498 70.5
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 1.6e-192 676.8 598 61.7
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 2.1e-192 676.4 611 60.7
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 8.0e-192 674.5 584 61.3
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 1.8e-191 673.3 591 60.4
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 5.7e-190 668.3 593 60.0
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 1.3e-189 667.2 593 60.7
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 2.2e-189 666.4 593 60.0
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 6.3e-189 664.8 609 58.9
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 1.1e-188 664.1 593 60.9
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 1.8e-188 663.3 608 59.0
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 2.4e-188 662.9 587 60.3
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 3.5e-187 659.1 582 59.8
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 1.0e-186 657.5 606 58.7
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 2.2e-186 656.4 624 57.5
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 3.8e-186 655.6 508 68.1
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 5.0e-186 655.2 664 57.4
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 1.1e-185 654.1 576 59.9
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 1.5e-185 653.7 609 57.3
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 4.2e-185 652.1 589 62.5
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 1.2e-184 650.6 623 57.9
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 1.6e-184 650.2 627 58.9
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 2.7e-184 649.4 670 53.9
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 3.6e-184 649.0 598 58.4
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 6.1e-184 648.3 614 57.7
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 6.1e-184 648.3 616 58.3
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 6.1e-184 648.3 639 55.6
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 3.0e-183 646.0 606 58.7
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 4.0e-183 645.6 587 58.8
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 4.0e-183 645.6 608 59.5
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 5.7e-182 641.7 614 58.1
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 9.8e-182 641.0 593 58.9
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 1.7e-181 640.2 611 57.1
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 3.7e-181 639.0 613 57.7
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 3.7e-181 639.0 612 57.4
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 3.7e-181 639.0 585 59.3
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 3.7e-181 639.0 606 58.7
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 1.8e-180 636.7 585 59.3
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 2.4e-180 636.3 609 58.0
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 5.4e-180 635.2 585 58.8
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 3.5e-179 632.5 641 55.5
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 5.9e-179 631.7 588 57.8
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.3e-178 629.8 635 56.1
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.3e-178 629.8 623 56.2
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 3.8e-178 629.0 593 58.5
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 6.6e-178 628.2 601 58.7
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 8.6e-178 627.9 613 57.6
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 1.1e-177 627.5 607 57.0
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 1.1e-177 627.5 607 57.2
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 1.9e-177 626.7 606 56.6
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 3.6e-176 622.5 577 59.1
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 7.5e-174 614.8 584 57.2
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 5.0e-170 602.1 501 65.3
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 2.9e-165 586.3 484 63.0
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 1.1e-164 584.3 604 53.8
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 1.4e-164 583.9 582 54.8
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 1.0e-162 577.8 586 55.1
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 2.1e-160 570.1 557 57.1
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 6.2e-160 568.5 605 52.9
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 2.3e-159 566.6 555 55.9
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 8.9e-159 564.7 570 54.2
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 9.2e-156 554.7 584 52.9
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 4.6e-155 552.4 526 59.1
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 3.3e-153 546.2 661 49.0
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 5.6e-153 545.4 338 81.4
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 4.4e-150 535.8 576 52.3
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 6.6e-146 521.9 583 49.1
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 5.8e-142 508.8 421 63.9
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 3.0e-138 496.5 590 48.0
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 1.9e-137 493.8 578 49.7
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 2.5e-137 493.4 598 47.5
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 1.7e-133 480.7 386 65.0
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 4.2e-132 476.1 444 57.2
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 1.1e-121 441.4 315 72.4
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 4.8e-112 409.5 392 55.1
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 8.2e-112 408.7 631 39.5
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 3.8e-101 373.2 336 58.9
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 1.2e-94 351.7 373 53.9
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 4.7e-67 260.0 253 56.5
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 1.0e-66 258.8 163 82.2
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 1.3e-64 251.9 239 60.3
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 2.0e-62 244.6 273 54.6
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 4.1e-47 193.7 138 74.6
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 5.1e-37 160.2 476 26.1
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 1.9e-36 158.3 418 29.9
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 1.8e-34 151.8 582 26.1
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 7.8e-30 136.3 178 51.1
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 2.0e-25 121.7 86 67.4
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 9.6e-20 102.8 87 54.0
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 2.1e-19 101.7 101 47.5
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 2.0e-17 95.1 69 56.5
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 9.9e-17 92.8 154 43.5
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 1.7e-16 92.0 66 75.8
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 1.4e-15 89.0 135 43.0
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 3.2e-15 87.8 100 47.0
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 4.2e-15 87.4 62 71.0
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 6.0e-14 83.6 205 35.6
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 6.2e-11 73.6 103 42.7
Oeu010133.1 Olea europaea HOM05D010114 ORTHO05D000601 1.2e-09 69.3 55 58.2
Lsat_1_v5_gn_5_80480 Lactuca sativa HOM05D004045 ORTHO05D002405 2.4e-07 61.6 35 80.0
Lsat_1_v5_gn_1_65601 Lactuca sativa HOM05D001017 ORTHO05D001025 9.3e-07 59.7 36 77.8
Hma1.2p1_0172F.1_g076230 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 6.0e-06 57.0 35 77.1


User provided reference genes

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