Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004829g0090 Nicotiana tabacum HOM05D006512 ORTHO05D008027 0.0e+00 1472.6 1024 100.0
Nitab4.5_0001393g0060 Nicotiana tabacum HOM05D006512 ORTHO05D008027 0.0e+00 1231.1 1031 84.7
Sopen10g002210 Solanum pennellii HOM05D006512 ORTHO05D008027 1.2e-274 950.3 1031 69.4
Peaxi162Scf01615g00010 Petunia axillaris HOM05D006512 ORTHO05D008027 1.6e-274 949.9 1054 67.7
PGSC0003DMG400014387 Solanum tuberosum HOM05D006512 ORTHO05D008027 3.0e-273 945.7 1031 70.4
CAN.G492.3 Capsicum annuum HOM05D006512 ORTHO05D008027 5.2e-273 944.9 1057 68.7
Solyc10g006260.3 Solanum lycopersicum HOM05D006512 ORTHO05D008027 2.3e-220 770.0 895 67.9
Lj1C877G6 Lonicera japonica HOM05D006512 ORTHO05D008027 1.1e-169 601.7 1046 51.4
CSS0043474 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 1.1e-166 591.7 1055 54.7
Oeu024915.1 Olea europaea HOM05D006512 ORTHO05D008027 2.2e-162 577.4 682 53.5
TWI39G1152 Tripterygium wilfordii HOM05D006512 ORTHO05D008027 2.1e-157 560.8 679 53.0
vmacro02216 Vaccinium macrocarpon HOM05D006512 ORTHO05D008027 2.3e-156 557.4 714 51.1
Duzib213G0172 Durio zibethinus HOM05D006512 ORTHO05D008027 5.2e-156 556.2 692 51.6
Prupe.4G218000 Prunus persica HOM05D006512 ORTHO05D008027 5.9e-152 542.7 696 50.4
CiPaw.12G131800 Carya illinoinensis HOM05D006512 ORTHO05D008027 1.7e-151 541.2 689 51.7
Ciclev10007420m.g Citrus clementina HOM05D006512 ORTHO05D008027 3.3e-150 537.0 687 51.4
Gohir.D05G372700 Gossypium hirsutum HOM05D006512 ORTHO05D008027 2.0e-147 527.7 687 50.9
Haze_09710 Corylus avellana HOM05D006512 ORTHO05D008027 4.4e-147 526.6 1053 43.7
FAN11G0896 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.7e-146 524.6 688 50.1
Atru.chr2.3489 Acer truncatum HOM05D006512 ORTHO05D008027 2.2e-146 524.2 691 51.1
Medtr5g093560 Medicago truncatula HOM05D006512 ORTHO05D008027 4.1e-145 520.0 676 50.4
Thecc.07G032200 Theobroma cacao HOM05D006512 ORTHO05D008027 1.2e-144 518.5 694 50.3
FAN21G3399 Fragaria x ananassa HOM05D006512 ORTHO05D008027 7.8e-144 515.8 693 49.6
TAR626G0449 Trochodendron aralioides HOM05D006512 ORTHO05D008027 1.0e-143 515.4 693 50.4
Hund23227 Selenicereus undatus HOM05D006512 ORTHO05D008027 6.6e-143 512.7 756 47.2
Ah.06g182620 Amaranthus hybridus HOM05D006512 ORTHO05D008027 1.0e-140 505.4 673 49.2
Actinidia32260 Actinidia chinensis HOM05D006512 ORTHO05D008027 5.2e-140 503.1 1047 45.5
RcHm_v2.0_Chr5g0040811 Rosa chinensis HOM05D006512 ORTHO05D008027 1.9e-137 494.6 697 47.3
Glyma.02G293200 Glycine max HOM05D006512 ORTHO05D008027 5.4e-137 493.0 690 48.7
Sabra16G0234800 Salix brachista HOM05D006512 ORTHO05D008027 1.6e-136 491.5 1055 42.1
Cpa.g.sc12.276 Carica papaya HOM05D006512 ORTHO05D008027 2.7e-136 490.7 600 52.5
arahy.Tifrunner.gnm1.ann1.WH2E03 Arachis hypogaea HOM05D006512 ORTHO05D008027 4.6e-136 490.0 686 47.5
arahy.Tifrunner.gnm1.ann1.DSL29X Arachis hypogaea HOM05D006512 ORTHO05D008027 1.0e-135 488.8 686 47.4
FAN16G2871 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.0e-135 488.8 687 47.6
TPR.G1164 Trifolium pratense HOM05D006512 ORTHO05D008027 1.7e-135 488.0 691 47.6
VMungo0647G0540 Vigna mungo HOM05D006512 ORTHO05D008027 1.7e-135 488.0 692 48.3
EL10Ac4g07766 Beta vulgaris HOM05D006512 ORTHO05D008027 2.3e-135 487.6 696 48.0
Migut.H01809 Erythranthe guttata HOM05D006512 ORTHO05D008027 6.6e-135 486.1 672 48.5
FAN25G2516 Fragaria x ananassa HOM05D006512 ORTHO05D008027 8.6e-135 485.7 686 47.4
Nn1g07218 Nelumbo nucifera HOM05D006512 ORTHO05D008027 9.5e-134 482.3 794 44.0
FAN25G1139 Fragaria x ananassa HOM05D006512 ORTHO05D008027 6.2e-133 479.6 687 47.5
Oeu041836.1 Olea europaea HOM05D006512 ORTHO05D008027 1.2e-131 475.3 937 47.0
Glyma.14G021200 Glycine max HOM05D006512 ORTHO05D008027 4.9e-130 469.9 692 47.0
AUR62020400 Chenopodium quinoa HOM05D006512 ORTHO05D008027 6.4e-130 469.5 683 46.6
PSO541G1419 Papaver somniferum HOM05D006512 ORTHO05D008027 1.2e-128 465.3 726 44.9
ECA236G0056 Erigeron canadensis HOM05D006512 ORTHO05D008027 3.5e-128 463.8 675 46.7
SGA_v2.0_scaffold172G39010 Striga asiatica HOM05D006512 ORTHO05D008027 3.9e-127 460.3 692 47.3
CANSAT11G0281 Cannabis sativa HOM05D006512 ORTHO05D008027 2.1e-125 454.5 698 46.1
PGR083G0988 Punica granatum HOM05D006512 ORTHO05D008027 3.6e-125 453.8 558 49.5
THA.LOC104811621 Tarenaya hassleriana HOM05D006512 ORTHO05D008027 9.9e-123 445.7 687 45.9
AUR62015819 Chenopodium quinoa HOM05D006512 ORTHO05D008027 5.4e-121 439.9 1045 42.1
Lsat_1_v5_gn_7_111120 Lactuca sativa HOM05D006512 ORTHO05D008027 4.6e-120 436.8 650 47.5
COL.COLO4_09692 Corchorus olitorius HOM05D006512 ORTHO05D008027 1.1e-118 432.2 620 46.8
Aqoxy1G03389_Aqoxy1G03390 Aquilegia oxysepala HOM05D006512 ORTHO05D008027 3.3e-118 430.6 737 43.1
Aa31LG5G12080 Aethionema arabicum HOM05D006512 ORTHO05D008027 8.9e-116 422.5 685 44.8
unitig_899.g15285 Utricularia gibba HOM05D006512 ORTHO05D008027 1.7e-114 418.3 735 42.3
CSS0048002 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 6.4e-114 416.4 517 53.6
Thhalv10015403m.g Eutrema salsugineum HOM05D006512 ORTHO05D008027 4.6e-112 410.2 679 44.6
AL8G30600 Arabidopsis lyrata HOM05D006512 ORTHO05D008027 6.0e-112 409.8 700 42.7
MBI07_g09094_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 5.1e-111 406.8 777 40.4
BolC2t07744H Brassica oleracea HOM05D006512 ORTHO05D008027 1.1e-110 405.6 684 44.0
A02p09890 Brassica napus HOM05D006512 ORTHO05D008027 2.5e-110 404.4 688 44.5
Potri.001G356800 Populus trichocarpa HOM05D006512 ORTHO05D008027 5.6e-110 403.3 525 51.4
C02p16450 Brassica napus HOM05D006512 ORTHO05D008027 7.3e-110 402.9 684 43.7
BcaC03g14267 Brassica carinata HOM05D006512 ORTHO05D008027 1.6e-109 401.7 684 43.7
QL08p009135 Quercus lobata HOM05D006512 ORTHO05D008027 1.6e-109 401.7 503 51.9
Carub.0008s1539 Capsella rubella HOM05D006512 ORTHO05D008027 2.1e-109 401.4 679 43.3
FvH4_3g23160 Fragaria vesca HOM05D006512 ORTHO05D008027 4.8e-109 400.2 520 50.0
Gorai.009G441100 Gossypium raimondii HOM05D006512 ORTHO05D008027 4.0e-108 397.1 519 50.5
Manes.03G133700 Manihot esculenta HOM05D006512 ORTHO05D008027 5.8e-107 393.3 503 51.7
DCAR_022584 Daucus carota HOM05D006512 ORTHO05D008027 2.9e-106 391.0 1043 43.8
Gohir.A04G013500 Gossypium hirsutum HOM05D006512 ORTHO05D008027 1.1e-105 389.0 508 50.8
BcaB05g22180 Brassica carinata HOM05D006512 ORTHO05D008027 1.0e-103 382.5 680 43.5
BraA02t06053Z Brassica rapa HOM05D006512 ORTHO05D008027 2.5e-102 377.9 712 41.4
Phvul.008G270300 Phaseolus vulgaris HOM05D006512 ORTHO05D008027 2.5e-102 377.9 595 45.5
Eucgr.F00738 Eucalyptus grandis HOM05D006512 ORTHO05D008027 7.3e-102 376.3 499 49.9
ATR0585G019 Amborella trichopoda HOM05D006512 ORTHO05D008027 1.1e-100 372.5 704 41.9
Duzib170G0430 Durio zibethinus HOM05D006512 ORTHO05D008027 2.0e-99 368.2 883 41.9
LjContig00272g0012578 Lotus japonicus HOM05D006512 ORTHO05D008027 2.0e-99 368.2 525 48.6
HPP92_009832 Vanilla planifolia HOM05D006512 ORTHO05D008027 2.2e-98 364.8 763 40.0
Sc03g0008470 Simmondsia chinensis HOM05D006512 ORTHO05D008027 9.3e-97 359.4 507 47.9
PSO675G4144 Papaver somniferum HOM05D006512 ORTHO05D008027 2.1e-96 358.2 583 44.3
Os01g0698100 Oryza sativa ssp. japonica HOM05D006512 ORTHO05D008027 1.3e-95 355.5 753 39.3
Ca_06341_v3 Cicer arietinum L. HOM05D006512 ORTHO05D008027 3.7e-93 347.4 504 48.6
Dinv40780 Davidia involucrata HOM05D006512 ORTHO05D008027 5.7e-86 323.6 313 62.6
SHI26585 Sapria himalayana HOM05D006512 ORTHO05D008027 7.9e-80 303.1 788 33.9
HanXRQChr11g0335931 Helianthus annuus HOM05D006512 ORTHO05D008027 2.3e-79 301.6 487 43.9
MD11G1213200 Malus domestica HOM05D006512 ORTHO05D008027 4.3e-78 297.4 483 46.0
SEGI_25925 Sequoiadendron giganteum HOM05D006512 ORTHO05D008027 5.7e-78 297.0 793 35.7
Actinidia05076 Actinidia chinensis HOM05D006512 ORTHO05D008027 7.7e-75 286.6 388 49.7
Actinidia26683 Actinidia chinensis HOM05D006512 ORTHO05D008027 1.7e-74 285.4 383 48.0
GSVIVG01037687001 Vitis vinifera HOM05D006512 ORTHO05D008027 6.5e-74 283.5 352 50.0
Lalb_Chr17g0348651 Lupinus albus HOM05D006512 ORTHO05D008027 4.2e-73 280.8 476 44.5
Psat2g014000 Pisum sativum HOM05D006512 ORTHO05D008027 1.6e-72 278.9 458 44.1
Sp6g17030 Schrenkiella parvula HOM05D006512 ORTHO05D008027 1.0e-71 276.2 541 41.8
CDE04G1000 Ceratophyllum demersum HOM05D006512 ORTHO05D008027 5.7e-70 270.4 577 38.5
Rhsim06G0220200 Rhododendron simsii HOM05D006512 ORTHO05D008027 2.0e-67 261.9 368 48.9
Cc05_g14000 Coffea canephora HOM05D006512 ORTHO05D008027 9.1e-60 236.5 754 47.1
Mapoly0045s0119 Marchantia polymorpha HOM05D006512 ORTHO05D008027 2.7e-51 208.4 759 30.7
Solyc10g006250.3 Solanum lycopersicum HOM05D006512 ORTHO05D008027 5.0e-50 204.1 143 75.5
AT5G55100 Arabidopsis thaliana HOM05D006512 ORTHO05D008027 3.2e-49 201.4 476 38.2
MBI07_g37843_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 4.4e-46 191.0 582 33.2
Cc05_g14010 Coffea canephora HOM05D006512 ORTHO05D008027 3.7e-45 188.0 143 67.8
Zm00001eb360910 Zea mays HOM05D006512 ORTHO05D008027 5.5e-41 174.1 517 33.3
HanXRQChr11g0335921 Helianthus annuus HOM05D006512 ORTHO05D008027 2.3e-39 168.7 143 62.9
GSVIVG01037689001 Vitis vinifera HOM05D006512 ORTHO05D008027 4.9e-37 161.0 144 57.6
QL08p009130 Quercus lobata HOM05D006512 ORTHO05D008027 7.7e-35 153.7 146 59.6
CARHR268440 Cardamine hirsuta HOM05D006512 ORTHO05D008027 6.1e-32 144.1 148 56.1
Eucgr.F00737 Eucalyptus grandis HOM05D006512 ORTHO05D008027 6.1e-32 144.1 154 54.5
MD11G1213100 Malus domestica HOM05D006512 ORTHO05D008027 4.4e-30 137.9 150 53.3
CANSAT56G4300 Cannabis sativa HOM05D006512 ORTHO05D008027 9.8e-30 136.7 140 59.3
Lalb_Chr17g0348641 Lupinus albus HOM05D006512 ORTHO05D008027 7.0e-28 130.6 146 52.1
Actinidia02676 Actinidia chinensis HOM05D000736 ORTHO05D008027 3.5e-11 75.1 125 44.0
VMungo0251G0907 Vigna mungo HOM05D001291 ORTHO05D008027 3.0e-10 72.0 75 53.3
CBR_g49368 Chara braunii HOM05D000019 ORTHO05D000048 6.6e-10 70.9 89 51.7
Cre11.g481700 Chlamydomonas reinhardtii HOM05D006512 ORTHO05D008027 2.3e-07 62.4 65 43.1
MD13G1244100 Malus domestica HOM05D002594 ORTHO05D003499 5.8e-06 57.8 104 25.0
Actinidia32261 Actinidia chinensis HOM05D006512 ORTHO05D008027 7.6e-06 57.4 71 49.3
PRCOL_00002654 Prasinoderma coloniale HOM05D002594 ORTHO05D003499 9.9e-06 57.0 174 23.0


User provided reference genes

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