Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 0.0e+00 1082.0 610 100.0
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 7.0e-302 1040.0 610 93.6
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 1.0e-244 850.1 613 78.6
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 5.0e-231 804.7 610 75.1
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 9.7e-227 790.4 607 74.8
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 6.1e-221 771.2 610 73.1
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 4.0e-188 662.1 617 65.2
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 4.6e-160 568.9 625 52.5
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 7.1e-145 518.5 606 50.8
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 1.2e-131 474.6 611 48.3
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 5.9e-131 472.2 617 46.7
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 6.5e-130 468.8 605 47.9
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 6.5e-130 468.8 602 48.2
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 3.0e-127 459.9 601 48.8
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 1.5e-126 457.6 601 48.6
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 2.5e-126 456.8 621 45.2
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 4.3e-126 456.1 599 46.6
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 3.7e-125 453.0 614 45.1
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 6.9e-124 448.7 599 47.4
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 9.1e-124 448.4 597 47.1
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 1.2e-123 448.0 593 47.2
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 7.7e-123 445.3 601 46.1
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 3.8e-122 443.0 602 47.2
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 1.1e-121 441.4 603 45.4
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 1.4e-121 441.0 602 43.9
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 2.5e-121 440.3 601 46.3
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 4.2e-121 439.5 603 45.3
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 5.5e-121 439.1 596 47.8
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 7.2e-121 438.7 597 46.2
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 2.7e-120 436.8 581 47.7
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 7.9e-120 435.3 599 46.1
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 1.0e-119 434.9 600 46.8
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 1.4e-119 434.5 601 43.8
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 1.8e-119 434.1 602 43.7
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 3.0e-119 433.3 600 46.0
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 3.0e-119 433.3 605 43.6
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 3.0e-119 433.3 640 43.4
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 1.1e-118 431.4 596 45.6
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 1.5e-118 431.0 619 46.4
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 3.3e-118 429.9 597 44.2
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 9.7e-118 428.3 560 48.6
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 2.2e-117 427.2 563 48.1
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 3.7e-117 426.4 602 44.9
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 6.3e-117 425.6 603 43.8
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 1.1e-116 424.9 599 44.2
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 1.4e-116 424.5 602 44.7
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 9.1e-116 421.8 571 46.2
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 1.5e-115 421.0 594 46.3
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 2.6e-115 420.2 595 45.0
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 4.5e-115 419.5 599 42.9
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 1.0e-114 418.3 600 46.7
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 2.9e-114 416.8 593 44.7
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 3.8e-114 416.4 609 45.6
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 5.0e-114 416.0 562 47.0
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 1.1e-113 414.8 600 43.3
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 1.5e-113 414.5 603 45.6
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 1.9e-113 414.1 606 43.1
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 4.2e-113 412.9 574 44.8
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 5.5e-113 412.5 594 43.1
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 9.4e-113 411.8 620 46.8
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 1.6e-112 411.0 597 44.2
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 3.6e-112 409.8 566 46.5
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 4.7e-112 409.5 566 46.5
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 6.1e-112 409.1 595 45.2
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 8.0e-112 408.7 562 47.0
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 1.8e-111 407.5 607 45.3
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 8.8e-111 405.2 594 45.8
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 5.7e-110 402.5 603 43.4
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 8.2e-109 398.7 600 42.0
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 1.0e-106 391.7 613 40.6
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 1.0e-106 391.7 576 42.4
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 1.3e-106 391.3 598 42.6
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 3.8e-106 389.8 608 42.1
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.6e-104 384.4 601 42.3
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 3.6e-104 383.3 597 39.4
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 2.3e-103 380.6 586 40.6
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 4.0e-103 379.8 583 40.3
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 4.4e-102 376.3 594 42.1
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 6.3e-101 372.5 593 43.2
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 1.1e-100 371.7 601 39.8
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 1.4e-100 371.3 603 39.1
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 1.6e-99 367.9 582 41.8
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 5.9e-99 365.9 590 44.6
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 1.3e-98 364.8 600 38.0
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 5.0e-98 362.8 600 37.7
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 6.5e-98 362.5 598 39.0
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 8.5e-98 362.1 582 38.7
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 8.5e-98 362.1 580 38.6
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 2.5e-97 360.5 599 38.2
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 4.2e-97 359.8 597 42.2
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 7.2e-97 359.0 600 37.2
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 1.6e-96 357.8 575 39.0
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 2.1e-96 357.5 557 44.0
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 5.2e-95 352.8 534 41.9
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 6.8e-95 352.4 599 39.4
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 7.5e-94 349.0 515 43.3
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 1.7e-93 347.8 582 38.8
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 6.3e-93 345.9 587 38.5
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 8.3e-93 345.5 456 45.0
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 2.4e-92 344.0 598 39.5
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 1.0e-90 338.6 609 37.9
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 2.9e-85 320.5 309 57.3
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 7.0e-84 315.8 745 34.5
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 1.2e-83 315.1 338 51.8
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 1.9e-81 307.8 653 34.0
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 1.0e-79 302.0 587 35.9
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 2.4e-76 290.8 510 38.8
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 9.2e-76 288.9 585 41.0
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 1.3e-74 285.0 564 41.0
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 2.3e-74 284.3 599 37.7
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 3.9e-74 283.5 596 35.6
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 4.3e-73 280.0 282 50.4
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 1.2e-67 261.9 522 37.2
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 3.5e-67 260.4 488 36.7
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 1.9e-65 254.6 608 33.7
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 9.5e-65 252.3 532 33.6
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 3.6e-64 250.4 639 33.5
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 2.1e-56 224.6 601 29.5
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 1.5e-54 218.4 672 28.6
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 1.1e-52 212.2 212 50.5
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 3.2e-52 210.7 579 30.1
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 7.1e-52 209.5 162 63.6
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 2.1e-51 208.0 280 37.5
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 3.3e-49 200.7 283 35.7
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 5.6e-49 199.9 654 27.8
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 2.8e-48 197.6 466 39.3
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 4.2e-44 183.7 459 35.1
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 3.4e-38 164.1 167 52.1
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 2.7e-35 154.5 288 32.6
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 3.0e-34 151.0 272 34.2
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 2.0e-30 138.3 184 48.4
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 4.9e-29 133.7 160 50.0
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 7.1e-28 129.8 131 53.4
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 3.0e-26 124.4 568 24.5
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 5.1e-26 123.6 511 24.5
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 5.7e-25 120.2 286 28.3
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 1.6e-19 102.1 181 34.8
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 1.8e-18 98.6 76 64.5
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.8e-18 98.6 76 64.5
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 1.0e-13 82.8 57 66.7
MSTRG.6231 Avicennia marina HOM05D005537 ORTHO05D006776 1.1e-12 79.3 68 55.9
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 2.5e-12 78.2 151 36.4


User provided reference genes

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