Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 0.0e+00 1750.7 868 100.0
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 0.0e+00 1662.9 868 95.0
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 0.0e+00 1615.5 868 92.3
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 0.0e+00 1401.3 868 80.2
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 0.0e+00 1398.6 865 80.3
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 0.0e+00 1387.9 868 79.3
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 0.0e+00 1387.1 868 79.1
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 0.0e+00 1361.3 878 77.7
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 8.3e-264 914.1 880 55.5
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 1.9e-244 849.7 871 51.9
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 9.5e-244 847.4 882 52.5
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 2.1e-243 846.3 871 51.7
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 4.2e-231 805.4 869 50.4
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 6.0e-230 801.6 871 49.8
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 3.3e-228 795.8 874 50.1
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 5.6e-228 795.0 897 49.9
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 3.1e-226 789.3 877 49.3
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 3.2e-223 779.2 886 48.8
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.0e-221 774.2 899 48.8
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 3.3e-220 769.2 911 47.4
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 1.6e-219 766.9 891 48.8
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 4.8e-219 765.4 894 47.7
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 1.4e-218 763.8 891 47.8
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 3.1e-218 762.7 897 47.6
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 4.0e-218 762.3 911 47.0
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 1.2e-217 760.8 894 47.7
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 1.5e-217 760.4 899 47.3
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 8.4e-216 754.6 877 47.2
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.0e-213 747.7 889 48.5
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 1.8e-213 746.9 917 46.6
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 3.0e-213 746.1 888 46.8
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 3.0e-213 746.1 896 46.5
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 3.9e-213 745.7 881 47.4
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 6.7e-213 745.0 896 46.2
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 8.2e-211 738.0 885 47.3
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 5.3e-210 735.3 879 46.5
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 1.2e-209 734.2 887 47.8
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 2.0e-209 733.4 871 47.2
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 7.6e-209 731.5 889 47.6
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 2.9e-208 729.6 880 46.7
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 2.9e-208 729.6 878 46.5
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 2.9e-208 729.6 880 46.4
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.1e-207 727.6 891 47.4
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 3.2e-207 726.1 891 45.1
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.8e-205 720.3 916 44.9
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 4.1e-202 709.1 861 46.9
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 1.4e-199 700.7 889 45.6
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 1.6e-198 697.2 872 46.1
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 2.1e-198 696.8 896 44.5
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 2.3e-197 693.3 890 44.8
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 3.0e-197 693.0 904 44.4
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 3.3e-196 689.5 890 45.3
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 5.3e-194 682.2 903 44.7
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 5.9e-193 678.7 908 44.6
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 1.0e-192 677.9 887 44.4
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 1.0e-192 677.9 887 44.4
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 1.1e-191 674.5 896 44.8
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 1.1e-191 674.5 890 45.2
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 7.2e-191 671.8 903 43.9
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 3.6e-190 669.5 985 42.6
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 4.6e-190 669.1 876 44.2
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 4.6e-190 669.1 888 44.0
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 6.1e-190 668.7 876 44.2
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 1.4e-189 667.5 914 44.1
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 3.0e-189 666.4 885 44.0
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 3.3e-188 662.9 893 43.7
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 3.3e-188 662.9 896 44.2
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 3.3e-188 662.9 874 44.7
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 5.7e-188 662.1 859 44.9
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 2.8e-187 659.8 872 44.3
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 4.8e-187 659.1 886 44.2
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 2.0e-185 653.7 896 44.0
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 7.7e-185 651.7 870 43.9
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 2.9e-184 649.8 898 42.5
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 3.8e-184 649.4 877 44.0
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 3.8e-184 649.4 877 44.0
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 6.5e-184 648.7 897 42.6
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 8.5e-184 648.3 882 44.0
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 8.5e-184 648.3 892 43.2
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 2.5e-183 646.7 804 44.9
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 9.4e-183 644.8 885 43.7
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.4e-181 641.0 858 44.8
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 7.4e-180 635.2 875 43.4
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 2.8e-179 633.3 873 43.3
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 2.8e-179 633.3 763 46.1
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 5.3e-178 629.0 882 42.4
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 9.1e-178 628.2 890 42.4
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 1.6e-177 627.5 877 41.3
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 2.6e-177 626.7 874 42.8
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 5.5e-175 619.0 889 42.6
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 5.5e-175 619.0 889 42.6
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 5.5e-175 619.0 614 53.3
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.8e-173 614.0 750 47.1
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 4.0e-173 612.8 781 45.2
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 4.5e-169 599.4 824 41.5
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 1.3e-168 597.8 836 42.7
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 2.5e-167 593.6 942 40.6
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 3.7e-163 579.7 884 41.6
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 1.8e-162 577.4 948 39.5
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 7.0e-162 575.5 932 39.1
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 1.8e-157 560.8 756 42.7
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 6.8e-157 558.9 905 38.2
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 5.9e-153 545.8 880 40.5
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 6.6e-152 542.3 684 44.2
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 6.0e-145 519.2 690 43.9
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 2.2e-139 500.7 711 41.2
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 2.4e-138 497.3 615 45.5
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 7.0e-138 495.7 611 44.8
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 3.4e-132 476.9 823 36.7
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 4.6e-129 466.5 671 40.7
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 4.3e-127 459.9 628 42.8
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 9.5e-127 458.8 574 47.7
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 1.6e-126 458.0 671 40.7
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 4.4e-124 449.9 568 46.1
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 3.0e-120 437.2 901 36.1
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 5.8e-108 396.4 517 45.3
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 5.8e-100 369.8 362 51.1
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.1e-97 361.3 548 42.0
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 3.0e-96 357.5 651 36.7
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 1.9e-95 354.8 569 38.7
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 3.5e-89 334.0 559 37.9
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 1.5e-87 328.6 516 40.7
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 4.3e-87 327.0 487 40.0
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 5.3e-85 320.1 997 29.6
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 1.3e-75 288.9 365 46.3
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 1.3e-75 288.9 522 34.9
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 1.4e-72 278.9 1095 26.2
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 9.7e-71 272.7 1136 24.6
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 4.4e-63 247.3 237 58.2
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 1.3e-59 235.7 293 44.7
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 1.5e-58 232.3 174 71.8
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 6.7e-56 223.4 311 43.7
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 2.2e-54 218.4 187 59.4
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 5.9e-52 210.3 181 60.8
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 4.0e-48 197.6 164 62.8
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 1.4e-45 189.1 181 55.8
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 4.5e-44 184.1 335 36.4
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 6.6e-43 180.3 237 45.6
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 5.5e-42 177.2 181 51.9
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 3.6e-41 174.5 198 53.5
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 6.3e-38 163.7 117 67.5
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 7.8e-36 156.8 120 68.3
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 9.5e-34 149.8 147 58.5
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 1.6e-33 149.1 147 55.8
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 3.6e-33 147.9 148 56.1
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 6.1e-33 147.1 205 41.5
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 1.4e-32 146.0 1055 22.8
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 5.2e-32 144.1 257 37.4
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 4.4e-31 141.0 267 33.7
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 2.7e-28 131.7 125 53.6
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 4.6e-28 131.0 139 56.1
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 7.8e-28 130.2 139 55.4
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 1.0e-27 129.8 141 51.8
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 1.0e-27 129.8 139 52.5
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 1.7e-27 129.0 125 52.0
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 6.6e-27 127.1 457 26.7
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.5e-26 125.9 96 65.6
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 4.3e-26 124.4 111 49.5
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 5.6e-26 124.0 929 22.2
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.2e-25 122.9 98 63.3
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 6.2e-25 120.6 314 29.6
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 2.0e-23 115.5 90 64.4
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 2.7e-20 105.1 84 66.7
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 1.0e-19 103.2 99 49.5
CAN.G231.17 Capsicum annuum HOM05D003758 ORTHO05D004344 1.5e-18 99.4 90 66.7
CBR_g17052 Chara braunii HOM05D003758 ORTHO05D004344 7.3e-18 97.1 326 24.8
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 4.4e-15 87.8 151 34.4
Cc02_g29260 Coffea canephora HOM05D003758 ORTHO05D004344 1.1e-13 83.2 63 71.4
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 4.1e-13 81.3 212 33.5
MD17G1275800 Malus domestica HOM05D003758 ORTHO05D004344 5.4e-13 80.9 64 67.2
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 3.5e-12 78.2 80 53.8
SEGI_18930 Sequoiadendron giganteum HOM05D003758 ORTHO05D004344 3.5e-12 78.2 240 28.3
Cre04.g214690 Chlamydomonas reinhardtii HOM05D003758 ORTHO05D004344 3.9e-11 74.7 327 22.9
Glyma.17G000200 Glycine max HOM05D003758 ORTHO05D004344 4.7e-09 67.8 100 49.0
MBI02_g41251_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 8.1e-09 67.0 62 59.7
Aqoxy3G01505 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 5.2e-08 64.3 49 57.1
CSS0008641 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 8.9e-08 63.5 59 59.3
TAR623G1284 Trochodendron aralioides HOM05D003758 ORTHO05D004344 2.0e-07 62.4 56 53.6
Actinidia00830 Actinidia chinensis HOM05D003758 ORTHO05D004344 3.4e-07 61.6 101 37.6
Os11g0677425 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 8.4e-06 57.0 48 52.1


User provided reference genes

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