Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 2298.5 1240 100.0
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 2169.8 1262 93.3
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 0.0e+00 2036.9 1238 87.9
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 1961.0 1240 85.2
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 0.0e+00 1957.6 1238 86.4
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 0.0e+00 1949.1 1238 86.3
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 1632.8 1275 70.9
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1587.8 1276 70.0
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 1569.3 1270 68.6
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1550.4 1253 69.8
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 0.0e+00 1540.0 1243 67.5
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 0.0e+00 1532.3 1272 68.0
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 0.0e+00 1508.4 1243 66.8
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 0.0e+00 1503.8 1280 66.3
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 1487.2 1269 65.9
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 1484.9 1269 67.2
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 0.0e+00 1478.0 1256 67.0
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 0.0e+00 1475.7 1279 65.8
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 0.0e+00 1474.9 1257 67.1
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 0.0e+00 1472.6 1261 65.0
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 1469.9 1268 65.8
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 1468.0 1267 65.0
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 0.0e+00 1463.4 1290 63.8
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 0.0e+00 1458.7 1295 64.9
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 0.0e+00 1457.6 1270 64.6
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 1456.8 1274 65.5
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 0.0e+00 1456.4 1278 64.2
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 0.0e+00 1454.9 1280 66.0
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 0.0e+00 1454.9 1282 64.9
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 1444.9 1269 64.7
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 1444.9 1269 64.7
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 0.0e+00 1443.7 1252 65.3
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 0.0e+00 1442.2 1265 65.1
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 0.0e+00 1440.6 1266 66.6
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 1439.5 1284 65.7
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 0.0e+00 1435.6 1261 64.9
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 0.0e+00 1434.9 1276 64.1
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 0.0e+00 1431.8 1271 64.5
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 0.0e+00 1431.0 1285 63.9
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 0.0e+00 1429.8 1266 64.6
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 0.0e+00 1428.7 1262 65.1
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 0.0e+00 1428.3 1305 62.6
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 0.0e+00 1426.4 1204 66.8
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 1425.6 1306 64.5
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 1423.3 1271 63.7
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 0.0e+00 1423.3 1272 63.7
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 1422.5 1276 62.8
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 0.0e+00 1416.0 1269 63.8
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 0.0e+00 1405.2 1333 60.5
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 1389.4 1275 62.4
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 1385.5 1253 64.3
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 0.0e+00 1382.5 1422 57.9
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 1380.5 1268 62.2
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 0.0e+00 1375.5 1247 62.9
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 1374.0 1275 62.6
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 0.0e+00 1367.1 1265 62.4
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 0.0e+00 1366.3 1260 60.9
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 0.0e+00 1365.5 1347 60.5
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 0.0e+00 1364.7 1218 65.3
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 0.0e+00 1357.8 1288 62.3
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 1355.9 1254 63.5
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 0.0e+00 1344.7 1259 61.4
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 1338.9 1316 59.6
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 1325.8 1237 62.4
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 1324.3 1268 60.4
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 0.0e+00 1321.6 1308 60.3
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 0.0e+00 1316.6 1251 62.2
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 1315.4 1276 59.7
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 0.0e+00 1307.7 1266 62.4
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 0.0e+00 1307.0 1266 61.5
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 1306.6 1245 60.0
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 0.0e+00 1302.0 1084 66.7
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 1292.3 1254 60.6
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 0.0e+00 1286.9 1261 61.1
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 0.0e+00 1279.6 1262 57.9
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 1272.7 1207 60.1
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 1265.4 1309 56.6
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 0.0e+00 1256.1 1254 59.3
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 1254.2 1254 58.9
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 0.0e+00 1251.9 1276 59.6
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1244.2 1276 58.0
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 0.0e+00 1242.6 1255 60.6
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 0.0e+00 1239.6 1254 58.4
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 1233.8 1249 58.8
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 0.0e+00 1212.6 1256 57.4
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 1208.0 1266 59.9
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 0.0e+00 1205.3 1235 58.6
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1194.9 1276 57.2
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 0.0e+00 1189.5 1278 56.6
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1186.0 1276 56.9
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 1180.2 675 90.1
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1158.7 1276 56.0
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 0.0e+00 1145.6 1220 57.3
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 0.0e+00 1093.2 1235 52.7
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 0.0e+00 1075.5 730 75.2
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 5.4e-309 1064.7 1168 56.8
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 2.8e-305 1052.4 1103 58.2
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 3.5e-300 1035.4 1358 47.9
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 1.2e-292 1010.4 1248 51.3
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 3.1e-288 995.7 1356 47.2
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 2.9e-286 989.2 1136 53.2
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 1.2e-276 957.2 739 70.5
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 2.8e-265 919.5 1179 48.3
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 6.1e-244 848.6 1244 46.5
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 2.4e-224 783.5 597 69.0
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 9.2e-224 781.6 872 56.1
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 1.4e-219 767.7 1124 44.7
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 5.4e-216 755.7 959 50.4
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 2.1e-212 743.8 777 51.1
CAN.G71.1 Capsicum annuum HOM05D003986 ORTHO05D004916 9.9e-186 655.2 512 77.1
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 4.7e-143 513.5 309 82.2
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 1.2e-125 455.7 609 41.5
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 6.4e-100 370.2 214 86.0
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 8.3e-100 369.8 222 82.9
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 9.2e-91 339.7 608 35.9
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 6.0e-90 337.0 299 61.9
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 1.3e-89 335.9 214 75.2
TAR371G1117 Trochodendron aralioides HOM05D003986 ORTHO05D004916 3.4e-85 321.2 571 42.4
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 1.1e-56 226.5 739 28.3
Actinidia23394 Actinidia chinensis HOM05D003986 ORTHO05D004916 2.5e-48 198.7 396 40.9
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 2.5e-48 198.7 741 25.0
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 2.2e-36 159.1 89 82.0
BcaB05g22549 Brassica carinata HOM05D003986 ORTHO05D004916 1.7e-31 142.9 76 89.5
TAR629G2897 Trochodendron aralioides HOM05D003986 ORTHO05D004916 5.3e-30 137.9 121 63.6
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.2e-29 136.7 109 62.4
Sabra18G0054000 Salix brachista HOM05D003986 ORTHO05D004916 1.1e-27 130.2 110 66.4
Actinidia23393 Actinidia chinensis HOM05D003986 ORTHO05D004916 2.1e-26 125.9 153 56.2
MBI18_g21002_MAGBIO Magnolia biondii HOM05D003986 ORTHO05D004916 2.7e-26 125.6 85 75.3
Lalb_Chr18g0049821 Lupinus albus HOM05D003986 ORTHO05D004916 3.6e-26 125.2 75 82.7
Lalb_Chr18g0050041 Lupinus albus HOM05D003986 ORTHO05D004916 9.7e-24 117.1 69 82.6
Sabra18G0053100 Salix brachista HOM05D003986 ORTHO05D004078 5.2e-17 94.7 80 62.5
Sabra18G0052900 Salix brachista HOM05D003986 ORTHO05D004916 2.6e-16 92.4 58 75.9
Sabra18G0053600 Salix brachista HOM05D003986 ORTHO05D004916 2.6e-16 92.4 58 75.9
TPR.G39728 Trifolium pratense HOM05D003986 ORTHO05D004916 4.4e-16 91.7 75 62.7
Sabra18G0053500 Salix brachista HOM05D003986 ORTHO05D004916 2.2e-15 89.4 58 74.1
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 6.3e-15 87.8 46 84.8
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 1.7e-12 79.7 54 72.2
Lalb_Chr05g0227571 Lupinus albus HOM05D003986 ORTHO05D004916 3.8e-12 78.6 41 87.8
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 2.5e-11 75.9 79 51.9
Lsat_1_v5_gn_3_86221 Lactuca sativa HOM05D003986 ORTHO05D004916 2.5e-11 75.9 44 84.1
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 9.4e-11 73.9 50 68.0
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 3.6e-10 72.0 50 78.0
VMungo0266G0001 Vigna mungo HOM05D000230 ORTHO05D000176 3.6e-10 72.0 48 72.9
VMungo0465G0002 Vigna mungo HOM05D003986 ORTHO05D004916 1.0e-09 70.5 58 67.2
COL.COLO4_22474 Corchorus olitorius HOM05D002548 ORTHO05D003031 2.0e-08 66.2 69 47.8
TAR371G1101 Trochodendron aralioides HOM05D003986 ORTHO05D004916 9.8e-08 63.9 103 39.8


User provided reference genes

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