Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 0.0e+00 1340.9 681 100.0
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 0.0e+00 1176.8 623 95.8
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 0.0e+00 1109.0 623 88.6
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 0.0e+00 1109.0 658 84.5
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 0.0e+00 1107.4 623 88.3
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 0.0e+00 1075.8 623 86.7
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 5.0e-288 994.2 636 80.2
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 3.9e-285 984.6 623 80.7
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 6.3e-259 897.5 628 70.9
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 3.1e-250 868.6 628 68.8
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 3.5e-249 865.1 624 70.2
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 4.2e-247 858.2 660 65.6
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 1.6e-246 856.3 626 68.7
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 4.9e-243 844.7 626 67.6
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 4.1e-242 841.6 632 67.6
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 2.0e-241 839.3 627 66.5
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 1.1e-239 833.6 632 66.8
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 3.6e-238 828.6 630 66.2
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 1.2e-236 823.5 630 66.8
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 3.4e-236 822.0 628 64.3
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 1.7e-235 819.7 628 66.9
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 8.0e-230 800.8 628 63.5
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 3.1e-229 798.9 628 64.3
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 6.8e-229 797.7 666 61.9
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 1.2e-228 797.0 624 63.6
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 2.0e-228 796.2 631 64.3
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 2.4e-226 789.3 675 59.1
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 2.4e-226 789.3 670 60.0
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 2.4e-226 789.3 630 62.9
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 7.0e-226 787.7 651 62.1
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 2.0e-225 786.2 632 64.1
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 6.0e-225 784.6 630 62.2
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 6.0e-225 784.6 632 63.8
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 1.0e-224 783.9 632 63.8
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 2.3e-224 782.7 632 63.4
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 9.5e-223 777.3 621 64.1
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 4.0e-221 771.9 629 62.8
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 5.8e-220 768.1 625 62.6
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 7.5e-220 767.7 632 62.2
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 2.2e-219 766.1 634 60.9
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 3.2e-218 762.3 623 60.8
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 5.4e-218 761.5 627 60.4
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 1.6e-217 760.0 629 60.9
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 1.6e-217 760.0 627 60.8
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 2.1e-217 759.6 630 59.2
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 2.3e-216 756.1 629 60.7
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 3.0e-216 755.7 662 58.3
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 1.5e-215 753.4 665 58.6
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 1.9e-215 753.1 625 61.4
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.5e-215 752.7 630 60.3
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 2.5e-215 752.7 634 60.4
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 4.3e-215 751.9 630 59.2
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 2.1e-214 749.6 630 60.5
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 4.7e-214 748.4 632 61.2
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 6.2e-214 748.0 659 58.0
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 1.1e-213 747.3 634 59.3
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 1.8e-213 746.5 634 59.1
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 8.9e-213 744.2 630 59.4
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 3.7e-211 738.8 666 57.1
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 1.4e-210 736.9 624 60.1
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 1.9e-210 736.5 666 57.1
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 2.4e-210 736.1 631 60.7
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 4.1e-210 735.3 665 57.0
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 4.1e-210 735.3 666 56.9
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 4.1e-210 735.3 665 57.0
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 5.4e-210 734.9 630 59.2
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 9.2e-210 734.2 630 59.8
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 1.2e-209 733.8 602 62.3
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 1.6e-209 733.4 622 59.8
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 1.6e-209 733.4 630 58.4
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 6.0e-209 731.5 628 60.0
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 3.9e-208 728.8 660 56.8
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 8.6e-208 727.6 630 58.7
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 1.1e-207 727.2 637 59.7
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 1.5e-207 726.9 630 59.0
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 2.5e-207 726.1 632 59.5
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 1.2e-206 723.8 635 59.2
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 5.2e-205 718.4 636 57.4
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 2.9e-203 712.6 630 57.0
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 3.8e-203 712.2 593 60.2
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 3.2e-202 709.1 667 55.9
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 4.2e-202 708.8 642 57.3
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 9.6e-199 697.6 596 60.1
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 2.4e-197 693.0 592 58.3
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 2.0e-196 689.9 624 58.8
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 4.4e-196 688.7 636 55.5
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 2.9e-195 686.0 598 58.9
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 8.4e-195 684.5 661 53.1
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 2.4e-194 682.9 653 56.4
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 1.2e-193 680.6 627 54.1
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 1.6e-193 680.2 641 55.2
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 1.3e-190 670.6 491 67.6
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 6.2e-190 668.3 626 56.5
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 7.6e-188 661.4 633 54.7
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 1.0e-184 651.0 512 64.8
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 6.7e-184 648.3 661 52.0
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 5.9e-172 608.6 632 51.3
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 2.2e-166 590.1 641 49.3
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 1.2e-164 584.3 639 49.5
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 1.3e-147 527.7 477 56.2
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 9.4e-146 521.5 424 64.2
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 2.0e-143 513.8 622 47.1
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 1.0e-136 491.5 374 66.3
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 1.8e-136 490.7 501 52.1
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 9.5e-130 468.4 361 63.7
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 2.6e-119 433.7 269 81.4
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 3.4e-119 433.3 632 38.8
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 4.9e-102 376.3 635 36.1
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 1.2e-97 361.7 637 35.5
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 4.9e-94 349.7 505 40.4
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 6.9e-88 329.3 384 45.8
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 2.0e-79 301.2 270 55.2
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 1.5e-74 285.0 259 53.7
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 8.1e-73 279.3 737 29.4
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 8.4e-62 242.7 617 28.7
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 2.0e-55 221.5 328 38.1
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 3.4e-55 220.7 262 47.7
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 1.4e-45 188.7 239 46.4
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 2.6e-31 141.4 80 77.5
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 2.9e-30 137.9 127 56.7
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 5.7e-26 123.6 237 31.6
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 4.8e-25 120.6 206 33.0
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 7.7e-23 113.2 101 49.5
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 7.7e-23 113.2 76 69.7
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 2.2e-22 111.7 101 59.4
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 4.2e-21 107.5 206 32.5
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 1.2e-20 105.9 76 67.1
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.8e-19 102.1 86 48.8
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 2.6e-18 98.2 62 79.0
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 3.7e-17 94.4 95 52.6
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 9.1e-16 89.7 166 34.3
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 1.2e-15 89.4 65 66.2
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 8.6e-14 83.2 101 46.5
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 3.2e-13 81.3 194 30.9
RcHm_v2.0_Chr6g0291761 Rosa chinensis HOM05D005402 ORTHO05D007036 5.4e-08 63.9 76 46.1
VMungo1215G1513 Vigna mungo HOM05D005402 ORTHO05D433923 5.0e-06 57.4 41 75.6


User provided reference genes

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