Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.6e-73 279.3 137 100.0
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 4.0e-56 221.5 121 90.1
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 2.9e-54 215.3 124 84.7
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.1e-53 213.4 121 86.8
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 3.5e-52 208.4 126 81.7
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 3.5e-52 208.4 126 81.7
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 3.5e-52 208.4 126 81.7
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 1.8e-51 206.1 124 81.5
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 3.0e-51 205.3 126 80.2
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 5.1e-51 204.5 120 83.3
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 8.7e-51 203.8 124 80.6
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 1.9e-50 202.6 120 81.7
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 4.3e-50 201.4 123 80.5
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 7.4e-50 200.7 113 85.8
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 7.4e-50 200.7 113 85.0
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 7.4e-50 200.7 126 77.8
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 9.7e-50 200.3 120 80.8
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 1.4e-48 196.4 120 76.7
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 5.3e-48 194.5 124 76.6
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 1.2e-47 193.4 120 76.7
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 2.2e-46 189.1 112 81.2
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 6.5e-46 187.6 112 79.5
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 8.5e-46 187.2 120 75.0
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 1.1e-45 186.8 120 75.0
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 1.4e-45 186.4 120 75.0
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 1.4e-45 186.4 120 75.0
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 3.2e-45 185.3 120 76.7
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 4.2e-45 184.9 111 79.3
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 7.2e-45 184.1 113 77.0
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 1.2e-44 183.3 120 75.8
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 1.2e-44 183.3 120 76.7
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 1.6e-44 183.0 120 75.0
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 1.6e-44 183.0 120 75.8
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 1.6e-44 183.0 120 75.8
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 2.1e-44 182.6 120 75.0
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 2.1e-44 182.6 111 79.3
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 1.0e-43 180.3 120 75.8
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 1.0e-43 180.3 120 75.0
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 1.4e-43 179.9 120 75.8
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 1.4e-43 179.9 120 75.8
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 1.8e-43 179.5 120 74.2
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 2.3e-43 179.1 120 75.8
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 3.0e-43 178.7 120 75.0
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 3.0e-43 178.7 120 71.7
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 3.9e-43 178.3 120 74.2
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 3.9e-43 178.3 120 74.2
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 5.1e-43 177.9 123 71.5
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 6.7e-43 177.6 130 71.5
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 8.8e-43 177.2 130 70.0
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 1.1e-42 176.8 113 78.8
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 1.1e-42 176.8 120 72.5
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 1.5e-42 176.4 120 74.2
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 2.0e-42 176.0 120 73.3
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 2.5e-42 175.6 103 82.5
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 2.5e-42 175.6 103 82.5
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 3.3e-42 175.3 120 70.8
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 4.3e-42 174.9 124 72.6
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 4.3e-42 174.9 120 73.3
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 4.3e-42 174.9 120 74.2
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 4.3e-42 174.9 120 72.5
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 5.7e-42 174.5 120 72.5
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 7.4e-42 174.1 120 69.2
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 7.4e-42 174.1 120 72.5
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 1.3e-41 173.3 120 71.7
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 2.2e-41 172.6 120 69.2
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 2.2e-41 172.6 120 70.8
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 2.2e-41 172.6 120 73.3
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 2.2e-41 172.6 120 70.0
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 2.8e-41 172.2 120 69.2
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 2.8e-41 172.2 120 69.2
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 2.8e-41 172.2 120 69.2
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 2.8e-41 172.2 120 69.2
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 2.8e-41 172.2 103 82.5
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 2.8e-41 172.2 103 82.5
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 2.8e-41 172.2 120 69.2
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 3.7e-41 171.8 120 68.3
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 6.3e-41 171.0 121 69.4
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 6.3e-41 171.0 121 71.1
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 8.2e-41 170.6 120 70.8
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 8.2e-41 170.6 120 70.0
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.1e-40 170.2 120 70.8
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 1.4e-40 169.9 103 80.6
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 1.4e-40 169.9 103 78.6
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 1.4e-40 169.9 120 71.7
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 1.4e-40 169.9 120 71.7
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.8e-40 169.5 125 69.6
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 1.8e-40 169.5 122 71.3
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 3.1e-40 168.7 121 69.4
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 3.1e-40 168.7 120 71.7
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 4.1e-40 168.3 120 67.5
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 4.1e-40 168.3 120 68.3
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 6.9e-40 167.5 120 70.0
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 6.9e-40 167.5 120 70.8
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 6.9e-40 167.5 125 68.8
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 6.9e-40 167.5 124 68.5
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 9.1e-40 167.2 120 68.3
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 9.1e-40 167.2 120 68.3
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 9.1e-40 167.2 120 68.3
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 9.1e-40 167.2 120 68.3
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 1.5e-39 166.4 120 70.0
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 1.5e-39 166.4 120 70.8
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 1.5e-39 166.4 120 69.2
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 2.0e-39 166.0 120 69.2
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 3.4e-39 165.2 120 69.2
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 4.5e-39 164.9 109 72.5
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 4.5e-39 164.9 126 64.3
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 4.5e-39 164.9 120 69.2
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 5.9e-39 164.5 107 73.8
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 5.9e-39 164.5 120 68.3
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 7.7e-39 164.1 120 69.2
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 1.0e-38 163.7 120 66.7
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 1.0e-38 163.7 120 67.5
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 1.3e-38 163.3 120 68.3
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 1.3e-38 163.3 120 67.5
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 2.2e-38 162.5 122 67.2
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 2.2e-38 162.5 120 67.5
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 5.0e-38 161.4 122 67.2
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.1e-37 160.2 104 76.0
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 1.4e-37 159.8 120 64.2
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 1.9e-37 159.5 106 74.5
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 1.9e-37 159.5 101 80.2
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 1.9e-37 159.5 120 65.8
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 7.2e-37 157.5 121 66.9
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 1.6e-36 156.4 103 73.8
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 2.1e-36 156.0 103 74.8
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 2.7e-36 155.6 120 65.0
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 2.7e-36 155.6 123 64.2
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 4.7e-36 154.8 130 62.3
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 7.9e-36 154.1 120 64.2
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 3.9e-35 151.8 142 59.2
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 4.4e-34 148.3 116 64.7
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 4.4e-34 148.3 103 70.9
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 1.4e-32 143.3 113 65.5
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 7.0e-32 141.0 120 61.7
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.5e-31 139.8 151 51.7
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 2.6e-31 139.0 94 74.5
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 5.0e-30 134.8 111 61.3
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 5.0e-30 134.8 75 89.3
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 1.2e-28 130.2 85 74.1
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.0e-27 125.6 120 55.8
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.0e-27 125.6 120 55.8
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.0e-27 125.6 120 55.8
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 2.0e-26 122.9 134 52.2
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 2.0e-26 122.9 120 57.5
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 2.6e-26 122.5 78 75.6
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 2.6e-26 122.5 120 51.7
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 7.4e-26 120.9 85 68.2
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 3.7e-25 118.6 75 81.3
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 1.8e-24 116.3 123 54.5
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 1.7e-22 109.8 111 55.9
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 4.2e-21 105.1 57 86.0
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 3.6e-20 102.1 76 65.8
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 1.4e-19 100.1 76 64.5
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 3.0e-19 99.0 76 64.5
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 4.4e-18 95.1 59 79.7
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 1.1e-16 90.5 65 66.2
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 1.8e-16 89.7 127 39.4
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 3.2e-13 79.0 49 75.5
DCAR_008576 Daucus carota HOM05D004437 ORTHO05D005401 7.2e-13 77.8 58 62.1
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 9.4e-13 77.4 43 88.4
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 1.0e-11 73.9 48 70.8
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 1.4e-11 73.6 53 62.3
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 2.2e-09 66.2 132 32.6
Nitab4.5_0001391g0020 Nicotiana tabacum HOM05D000002 ORTHO05D000001 4.8e-09 65.1 60 60.0
Nitab4.5_0011945g0010 Nicotiana tabacum HOM05D020376 ORTHO05D000001 4.8e-09 65.1 32 96.9
Nitab4.5_0001344g0040 Nicotiana tabacum HOM05D000002 ORTHO05D000001 3.1e-08 62.4 32 93.8
Nitab4.5_0011945g0020 Nicotiana tabacum HOM05D000002 ORTHO05D000001 3.1e-08 62.4 31 93.5
Nitab4.5_0020615g0010 Nicotiana tabacum HOM05D000002 ORTHO05D000001 5.4e-08 61.6 32 93.8
Nitab4.5_0006272g0040 Nicotiana tabacum HOM05D020376 ORTHO05D000001 7.0e-08 61.2 32 93.8
Nitab4.5_0000444g0250 Nicotiana tabacum HOM05D000002 ORTHO05D000001 1.6e-07 60.1 31 90.3
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 2.0e-07 59.7 36 75.0
Nitab4.5_0002648g0030 Nicotiana tabacum HOM05D020376 ORTHO05D000001 2.0e-07 59.7 31 93.5
Nitab4.5_0001381g0090 Nicotiana tabacum HOM05D020376 ORTHO05D282694 3.5e-07 58.9 31 90.3
Nitab4.5_0004786g0030 Nicotiana tabacum HOM05D020376 ORTHO05D285614 3.5e-07 58.9 32 84.4
Nitab4.5_0006102g0020 Nicotiana tabacum HOM05D000002 ORTHO05D000001 5.9e-07 58.2 28 100.0
Nitab4.5_0002955g0030 Nicotiana tabacum HOM05D020376 ORTHO05D282361 2.9e-06 55.8 32 87.5
Nitab4.5_0009046g0020 Nicotiana tabacum HOM05D000002 ORTHO05D000001 5.0e-06 55.1 32 87.5


User provided reference genes

Program Settings