Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 5.4e-279 964.1 670 100.0
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 2.0e-220 769.6 685 87.4
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 3.8e-208 728.8 712 78.7
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 2.4e-202 709.5 732 72.3
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 1.3e-200 703.7 733 75.2
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 1.6e-198 696.8 733 74.9
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 1.4e-157 560.8 736 62.4
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 2.9e-155 553.1 737 66.2
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 3.7e-155 552.7 760 59.7
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 9.2e-154 548.1 718 63.0
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 3.5e-153 546.2 729 66.3
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 4.6e-153 545.8 725 66.2
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 3.0e-152 543.1 725 65.9
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 3.0e-152 543.1 733 63.8
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 3.9e-152 542.7 729 62.1
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 2.8e-150 536.6 735 60.0
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 1.4e-149 534.3 730 60.4
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 1.8e-149 533.9 737 61.1
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 5.2e-149 532.3 737 60.8
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 5.2e-149 532.3 687 67.2
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 6.8e-149 531.9 741 61.4
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 4.4e-148 529.3 734 62.9
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 7.6e-148 528.5 736 59.4
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 2.9e-147 526.6 735 59.2
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 8.4e-147 525.0 730 63.3
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 1.4e-146 524.2 724 64.8
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 1.4e-146 524.2 743 64.9
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 1.9e-146 523.9 741 59.5
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 2.4e-146 523.5 735 58.4
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 3.2e-146 523.1 736 62.5
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 5.4e-146 522.3 727 59.3
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 7.1e-146 521.9 743 58.8
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 9.3e-146 521.5 731 64.3
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 1.2e-145 521.2 724 61.7
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 1.6e-145 520.8 732 57.1
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 3.5e-145 519.6 736 57.1
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 3.5e-145 519.6 707 59.1
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 3.5e-145 519.6 761 52.0
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 6.0e-145 518.8 738 62.6
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 7.8e-145 518.5 726 61.2
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 1.0e-144 518.1 724 63.7
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 1.0e-144 518.1 736 62.6
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 3.9e-144 516.2 726 59.2
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 3.9e-144 516.2 736 62.6
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 3.9e-144 516.2 731 64.2
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 5.1e-144 515.8 734 54.2
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 8.7e-144 515.0 727 61.2
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 1.9e-143 513.8 736 59.1
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 3.3e-143 513.1 727 62.0
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 4.3e-143 512.7 732 64.2
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 3.6e-142 509.6 734 62.3
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 8.1e-142 508.4 775 52.5
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.1e-141 508.1 748 58.4
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 1.4e-141 507.7 726 59.0
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 5.3e-141 505.8 735 62.2
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 5.3e-141 505.8 720 63.3
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 3.4e-140 503.1 718 60.3
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 3.4e-140 503.1 729 61.5
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 7.6e-140 501.9 722 58.6
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 7.6e-140 501.9 729 61.0
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 1.7e-139 500.7 725 61.7
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 6.4e-139 498.8 731 60.7
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 2.4e-138 496.9 698 63.0
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 5.4e-138 495.7 715 61.1
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 7.1e-138 495.4 730 59.9
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 2.1e-137 493.8 732 57.8
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 2.7e-137 493.4 724 58.0
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 3.0e-136 490.0 628 63.7
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 5.1e-136 489.2 735 56.3
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 8.7e-136 488.4 725 59.3
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 1.9e-135 487.3 709 61.2
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 2.5e-135 486.9 725 55.7
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 7.4e-135 485.3 706 57.6
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 9.6e-135 485.0 707 58.0
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 2.1e-134 483.8 712 59.6
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 3.6e-134 483.0 715 57.2
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 4.8e-134 482.6 715 57.2
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 4.8e-134 482.6 715 57.2
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 8.1e-134 481.9 715 57.1
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 1.1e-133 481.5 715 57.2
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 1.1e-133 481.5 715 57.2
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 1.1e-133 481.5 710 59.7
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 1.4e-133 481.1 705 57.2
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 1.8e-133 480.7 716 56.8
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 5.3e-133 479.2 722 56.9
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 6.9e-133 478.8 713 57.4
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 2.0e-132 477.2 707 56.9
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 2.0e-132 477.2 718 56.5
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 3.4e-132 476.5 717 58.2
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 3.4e-132 476.5 629 56.4
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 2.9e-131 473.4 720 56.1
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 2.9e-131 473.4 717 54.3
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 8.4e-131 471.9 709 58.4
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 8.4e-131 471.9 727 60.1
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 8.4e-131 471.9 714 53.2
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 4.2e-130 469.5 718 60.4
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 7.4e-127 458.8 707 56.2
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 2.1e-126 457.2 606 65.5
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 6.2e-126 455.7 701 57.9
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 6.2e-126 455.7 734 55.3
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 2.4e-125 453.8 714 58.7
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 3.4e-124 449.9 712 53.4
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 1.3e-123 448.0 724 54.4
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 6.5e-123 445.7 624 57.9
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 2.5e-122 443.7 533 74.7
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 3.7e-118 429.9 717 53.6
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 1.2e-116 424.9 602 62.0
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 4.2e-114 416.4 728 55.8
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 4.6e-113 412.9 577 62.7
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 5.1e-112 409.5 545 66.4
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.1e-111 408.3 734 52.6
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 9.7e-111 405.2 723 43.0
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 2.8e-110 403.7 702 52.6
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 4.5e-108 396.4 605 55.2
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 1.3e-107 394.8 525 65.7
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 1.5e-103 381.3 520 67.1
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 2.5e-103 380.6 524 67.2
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 1.1e-90 338.6 734 43.1
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 3.6e-89 333.6 314 58.6
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 4.4e-87 326.6 523 53.5
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 3.1e-85 320.5 723 41.6
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 2.5e-82 310.8 323 54.5
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 3.0e-80 303.9 723 40.7
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 9.1e-77 292.4 678 41.7
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 6.1e-73 279.6 413 56.7
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 8.3e-70 269.2 310 55.2
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 1.4e-69 268.5 518 51.4
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 7.0e-69 266.2 467 60.8
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 9.2e-69 265.8 280 63.2
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 1.2e-65 255.4 300 51.7
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 1.8e-64 251.5 319 74.6
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 5.7e-63 246.5 279 85.3
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 1.7e-62 245.0 507 36.1
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 1.1e-58 232.3 172 85.5
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 6.2e-57 226.5 186 57.5
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 1.2e-47 195.7 303 42.6
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 4.1e-45 187.2 251 47.0
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 6.0e-44 183.3 249 47.8
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 1.6e-41 175.3 263 85.6
Dinv12692 Davidia involucrata HOM05D003766 ORTHO05D004607 8.1e-41 172.9 87 89.7
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 2.6e-39 167.9 259 44.0
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 9.9e-39 166.0 96 83.3
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 3.2e-37 161.0 183 52.5
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 1.6e-36 158.7 96 80.2
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 5.1e-35 153.7 321 59.5
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 2.0e-31 141.7 251 39.4
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 3.2e-29 134.4 126 59.5
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 2.6e-23 114.8 82 69.5
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 7.9e-20 103.2 123 40.7
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 2.3e-19 101.7 140 49.3
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 4.9e-14 84.0 147 41.5
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 1.9e-13 82.0 114 40.4
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 2.3e-11 75.1 179 33.5
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 3.1e-08 64.7 161 30.4
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 2.0e-07 62.0 115 34.8
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 3.8e-06 57.8 190 30.0


User provided reference genes

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