Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004511g0020 Nicotiana tabacum HOM05D001674 ORTHO05D008599 0.0e+00 3010.3 1635 100.0
CAN.G479.33 Capsicum annuum HOM05D001674 ORTHO05D008599 0.0e+00 2436.0 1633 83.0
Sopen03g034510 Solanum pennellii HOM05D001674 ORTHO05D008599 0.0e+00 2436.0 1634 83.4
PGSC0003DMG400024553 Solanum tuberosum HOM05D001674 ORTHO05D008599 0.0e+00 2114.7 1424 84.0
Peaxi162Scf00201g00021 Petunia axillaris HOM05D001674 ORTHO05D008599 0.0e+00 1905.2 1207 89.2
Solyc03g115510.3 Solanum lycopersicum HOM05D001674 ORTHO05D008599 0.0e+00 1857.4 1208 87.3
Nitab4.5_0020510g0010 Nicotiana tabacum HOM05D001674 ORTHO05D008599 0.0e+00 1671.4 986 97.1
Cc00_g02250 Coffea canephora HOM05D001674 ORTHO05D008599 0.0e+00 1528.5 1747 56.4
QL10p018629 Quercus lobata HOM05D001674 ORTHO05D008599 0.0e+00 1528.5 1695 58.2
vmacro17586 Vaccinium macrocarpon HOM05D001674 ORTHO05D008599 0.0e+00 1515.7 1686 56.2
Hma1.2p1_0060F.1_g033350 Hydrangea macrophylla HOM05D001674 ORTHO05D008599 0.0e+00 1509.6 1687 58.5
Atru.chr9.280 Acer truncatum HOM05D001674 ORTHO05D008599 0.0e+00 1508.0 1716 56.8
TAR629G0913 Trochodendron aralioides HOM05D001674 ORTHO05D008599 0.0e+00 1500.0 1726 56.1
Thecc.03G096700 Theobroma cacao HOM05D001674 ORTHO05D008599 0.0e+00 1484.2 1706 56.6
MSTRG.9602 Avicennia marina HOM05D001674 ORTHO05D008599 0.0e+00 1472.2 1673 57.9
Oeu032213.1 Olea europaea HOM05D001674 ORTHO05D008599 0.0e+00 1469.1 1706 57.1
GSVIVG01007917001 Vitis vinifera HOM05D001674 ORTHO05D008599 0.0e+00 1451.8 1643 55.0
Duzib068G0733 Durio zibethinus HOM05D001674 ORTHO05D008599 0.0e+00 1438.7 1714 55.0
Actinidia04849 Actinidia chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1435.2 1430 61.7
Ciclev10018469m.g Citrus clementina HOM05D001674 ORTHO05D008599 0.0e+00 1432.2 1720 55.5
COL.COLO4_36885 Corchorus olitorius HOM05D001674 ORTHO05D008599 0.0e+00 1429.1 1702 55.1
Gorai.007G039000 Gossypium raimondii HOM05D001674 ORTHO05D008599 0.0e+00 1421.0 1702 55.5
Nn4g23353 Nelumbo nucifera HOM05D001674 ORTHO05D008599 0.0e+00 1419.4 1727 53.2
Migut.D01672 Erythranthe guttata HOM05D001674 ORTHO05D008599 0.0e+00 1417.9 1678 53.4
Gohir.A11G032900 Gossypium hirsutum HOM05D001674 ORTHO05D008599 0.0e+00 1404.0 1686 55.3
DCAR_031671 Daucus carota HOM05D001674 ORTHO05D008599 0.0e+00 1399.4 1694 53.7
SalBow7G3498 Salvia bowleyana HOM05D001674 ORTHO05D008599 0.0e+00 1397.1 1717 53.7
Manes.06G087600 Manihot esculenta HOM05D001674 ORTHO05D008599 0.0e+00 1374.0 1796 52.5
CANSAT80G0851 Cannabis sativa HOM05D001674 ORTHO05D008599 0.0e+00 1369.4 1715 54.5
TWI15G1152 Tripterygium wilfordii HOM05D001674 ORTHO05D008599 0.0e+00 1358.6 1697 54.2
Prupe.5G200400 Prunus persica HOM05D001674 ORTHO05D008599 0.0e+00 1353.2 1710 53.9
PGR083G0537 Punica granatum HOM05D001674 ORTHO05D008599 0.0e+00 1349.3 1708 52.1
Glyma.17G076400 Glycine max HOM05D001674 ORTHO05D008599 0.0e+00 1334.3 1712 52.3
Sed0027646 Sechium edule HOM05D001674 ORTHO05D008599 0.0e+00 1329.7 1708 52.5
Aqoxy3G00452 Aquilegia oxysepala HOM05D001674 ORTHO05D008599 0.0e+00 1329.3 1705 51.8
Lalb_Chr13g0302981 Lupinus albus HOM05D001674 ORTHO05D008599 0.0e+00 1327.8 1697 52.2
Phvul.003G186700 Phaseolus vulgaris HOM05D001674 ORTHO05D008599 0.0e+00 1327.0 1713 52.4
Glyma.05G023300 Glycine max HOM05D001674 ORTHO05D008599 0.0e+00 1326.6 1712 52.3
RcHm_v2.0_Chr7g0182421 Rosa chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1321.6 1707 53.1
Lj4g0011824 Lotus japonicus HOM05D001674 ORTHO05D008599 0.0e+00 1318.9 1716 52.7
Rhsim08G0149500 Rhododendron simsii HOM05D001674 ORTHO05D008599 0.0e+00 1317.8 1473 56.3
FAN08G0876 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1317.0 1704 52.8
arahy.Tifrunner.gnm1.ann1.MMN4BF Arachis hypogaea HOM05D001674 ORTHO05D008599 0.0e+00 1315.8 1720 52.0
FvH4_5g14340 Fragaria vesca HOM05D001674 ORTHO05D008599 0.0e+00 1312.4 1700 52.9
VMungo1215G3312 Vigna mungo HOM05D001674 ORTHO05D008599 0.0e+00 1311.6 1713 51.8
TPR.G2046 Trifolium pratense HOM05D001674 ORTHO05D008599 0.0e+00 1310.8 1702 52.6
FAN18G2329 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1307.7 1700 52.8
Lsat_1_v5_gn_1_13760 Lactuca sativa HOM05D001674 ORTHO05D008599 0.0e+00 1307.7 1644 52.7
FAN13G3105 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1306.2 1700 52.8
SGA_v2.0_scaffold3G01735 Striga asiatica HOM05D001674 ORTHO05D008599 0.0e+00 1305.4 1676 51.4
HanXRQChr04g0107361 Helianthus annuus HOM05D001674 ORTHO05D008599 0.0e+00 1304.3 1627 52.0
Sabra12G0048200 Salix brachista HOM05D001674 ORTHO05D008599 0.0e+00 1299.6 1902 48.3
AUR62008489 Chenopodium quinoa HOM05D001674 ORTHO05D008599 0.0e+00 1298.9 1716 51.1
Medtr4g109230 Medicago truncatula HOM05D001674 ORTHO05D008599 0.0e+00 1298.5 1690 52.4
CsaV3_1G002700 Cucumis sativus L. HOM05D001674 ORTHO05D008599 0.0e+00 1297.3 1707 52.1
Hund02613 Selenicereus undatus HOM05D001674 ORTHO05D008599 0.0e+00 1297.0 1699 50.7
MELO3C017205.2 Cucumis melo HOM05D001674 ORTHO05D008599 0.0e+00 1296.6 1714 52.0
Psat4g048680 Pisum sativum HOM05D001674 ORTHO05D008599 0.0e+00 1291.9 1695 52.3
ClCG06G015860 Citrullus lanatus HOM05D001674 ORTHO05D008599 0.0e+00 1290.4 1699 52.1
AUR62021608 Chenopodium quinoa HOM05D001674 ORTHO05D008599 0.0e+00 1287.7 1703 50.4
Ca_21793_v3 Cicer arietinum L. HOM05D001674 ORTHO05D008599 0.0e+00 1285.8 1632 53.4
Eucgr.B00566 Eucalyptus grandis HOM05D001674 ORTHO05D008599 0.0e+00 1275.8 1507 56.1
Haze_07676 Corylus avellana HOM05D001674 ORTHO05D008599 0.0e+00 1274.2 1489 57.2
ECA247G0462 Erigeron canadensis HOM05D001674 ORTHO05D008599 0.0e+00 1264.2 1638 51.7
PSO478G4640 Papaver somniferum HOM05D001674 ORTHO05D008599 0.0e+00 1253.0 1630 51.6
Potri.012G066900 Populus trichocarpa HOM05D001674 ORTHO05D008599 0.0e+00 1233.0 1584 52.7
PSO017G4474 Papaver somniferum HOM05D001674 ORTHO05D008599 0.0e+00 1207.2 1622 51.0
Gohir.D11G036200 Gossypium hirsutum HOM05D001674 ORTHO05D008599 0.0e+00 1188.7 1179 62.9
ATR0064G082 Amborella trichopoda HOM05D001674 ORTHO05D008599 0.0e+00 1140.9 1499 51.4
Dinv10682 Davidia involucrata HOM05D001674 ORTHO05D008599 0.0e+00 1132.9 961 67.2
CiPaw.11G049600 Carya illinoinensis HOM05D001674 ORTHO05D008599 0.0e+00 1132.5 1314 57.1
Cpa.g.sc94.3 Carica papaya HOM05D001674 ORTHO05D008599 0.0e+00 1127.9 1237 59.5
Sc12g0006570 Simmondsia chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1107.0 1362 53.3
Lj5A106T70 Lonicera japonica HOM05D001674 ORTHO05D008599 0.0e+00 1100.1 1243 57.5
Actinidia09243 Actinidia chinensis HOM05D001674 ORTHO05D008599 2.2e-294 1016.5 942 62.8
SEGI_10628 Sequoiadendron giganteum HOM05D001674 ORTHO05D008599 1.6e-292 1010.4 1275 51.7
MD14G1208500 Malus domestica HOM05D001674 ORTHO05D008599 4.2e-285 985.7 1217 54.8
Zm00001eb108430 Zea mays HOM05D001674 ORTHO05D008599 3.6e-284 982.6 1194 55.2
Dinv38777 Davidia involucrata HOM05D001674 ORTHO05D008599 1.5e-274 950.7 819 66.4
Ah.02g113890 Amaranthus hybridus HOM05D001674 ORTHO05D008599 2.5e-261 906.7 1403 47.1
unitig_37.g12722 Utricularia gibba HOM05D001674 ORTHO05D008599 1.2e-255 887.9 1102 51.7
Nitab4.5_0002881g0120 Nicotiana tabacum HOM05D001674 ORTHO05D008599 2.4e-240 837.0 1635 37.9
SMO117G0045 Selaginella moellendorffii HOM05D001674 ORTHO05D008599 5.4e-240 835.9 1224 48.4
Pp3c11_9170 Physcomitrium patens HOM05D001674 ORTHO05D008599 3.3e-237 826.6 1380 44.7
Os06g0235300 Oryza sativa ssp. japonica HOM05D001674 ORTHO05D008599 1.0e-174 619.0 747 57.8
AagrBONN_evm.TU.Sc2ySwM_228.3354 Anthoceros agrestis HOM05D001674 ORTHO05D008599 8.5e-169 599.4 870 44.6
CDE07G0117 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 5.4e-139 500.4 551 56.4
Dinv10683 Davidia involucrata HOM05D001674 ORTHO05D008599 6.8e-134 483.4 705 48.4
CDE07G0766 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 3.0e-129 468.0 506 57.5
Pp3c1_9760 Physcomitrium patens HOM05D001674 ORTHO05D008599 1.6e-122 445.7 1121 34.1
Actinidia09244 Actinidia chinensis HOM05D001674 ORTHO05D008599 2.0e-117 428.7 719 43.7
Dinv38778 Davidia involucrata HOM05D001674 ORTHO05D008599 5.9e-85 320.9 686 41.5
Actinidia09199 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.1e-83 316.6 708 37.6
Ah.02g113880 Amaranthus hybridus HOM05D001674 ORTHO05D008599 5.5e-75 287.7 265 56.2
PGSC0003DMG400006818 Solanum tuberosum HOM05D001674 ORTHO05D008599 7.7e-69 267.3 159 86.2
Lj5A106T69 Lonicera japonica HOM05D001674 ORTHO05D008599 6.3e-63 247.7 474 40.9
MD14G1208300 Malus domestica HOM05D001674 ORTHO05D008599 2.9e-60 238.8 238 54.6
Rhsim08G0149700 Rhododendron simsii HOM05D001674 ORTHO05D008599 4.1e-54 218.4 220 53.6
CDE07G0655 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 2.3e-41 176.0 176 56.2
unitig_37.g12721 Utricularia gibba HOM05D001674 ORTHO05D008599 1.4e-38 166.8 210 48.1
Actinidia09209 Actinidia chinensis HOM05D001674 ORTHO05D008599 9.2e-38 164.1 152 59.2
Cpa.g.sc94.4 Carica papaya HOM05D001674 ORTHO05D008599 1.6e-37 163.3 188 53.2
PRCOL_00000483 Prasinoderma coloniale HOM05D001674 ORTHO05D008599 1.9e-35 156.4 1337 22.6
CBR_g23198 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-33 149.8 315 34.0
Actinidia09203 Actinidia chinensis HOM05D001674 ORTHO05D008599 9.2e-30 137.5 132 65.2
Actinidia09211 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.2e-24 120.6 277 37.2
TAR376G0971 Trochodendron aralioides HOM05D001674 ORTHO05D008599 2.6e-24 119.4 111 53.2
MCO15G104 Micromonas commoda HOM05D001674 ORTHO05D008599 4.1e-22 112.1 248 31.9
CBR_g23193 Chara braunii HOM05D000019 ORTHO05D000048 9.2e-22 110.9 107 56.1
Actinidia09202 Actinidia chinensis HOM05D001674 ORTHO05D008599 2.3e-20 106.3 161 45.3
Cre16.g679400 Chlamydomonas reinhardtii HOM05D001674 ORTHO05D008599 5.0e-20 105.1 279 28.0
CBR_g23210 Chara braunii HOM05D000019 ORTHO05D000002 8.3e-15 87.8 64 53.1
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 7.1e-14 84.7 59 67.8
CBR_g23187 Chara braunii HOM05D001674 ORTHO05D000353 1.3e-12 80.5 69 58.0


User provided reference genes

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