Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.8e-225 785.0 412 100.0
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.9e-206 721.8 412 93.7
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 5.3e-168 594.7 438 73.3
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 1.3e-166 590.1 423 75.4
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.9e-162 576.2 438 71.9
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 1.0e-155 553.9 448 68.3
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 8.8e-147 524.2 444 68.0
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 1.3e-145 520.4 423 69.0
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 3.1e-144 515.8 413 69.0
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 4.1e-144 515.4 452 65.5
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 2.5e-141 506.1 433 66.1
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 5.5e-141 505.0 418 68.4
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.0e-139 500.7 431 66.1
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 2.3e-139 499.6 422 68.2
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 2.0e-138 496.5 424 66.5
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 3.7e-137 492.3 416 68.0
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.4e-136 490.3 447 63.5
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 5.3e-136 488.4 439 64.5
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 7.0e-136 488.0 450 63.8
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 1.2e-135 487.3 425 64.2
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 2.9e-134 482.6 455 61.8
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 5.0e-134 481.9 450 61.6
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 2.5e-133 479.6 458 61.4
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 3.2e-133 479.2 451 63.9
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 9.4e-133 477.6 454 61.9
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.2e-132 477.2 448 61.6
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 3.0e-131 472.6 423 64.1
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 5.2e-131 471.9 424 63.7
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 6.8e-131 471.5 425 64.2
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 2.6e-130 469.5 415 66.0
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 5.7e-130 468.4 442 62.9
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 7.5e-130 468.0 472 60.2
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 1.3e-129 467.2 461 59.7
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 2.8e-129 466.1 441 62.6
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 4.8e-129 465.3 448 59.6
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 4.5e-127 458.8 429 62.7
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 7.7e-127 458.0 454 59.9
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 1.1e-125 454.1 432 63.2
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 1.9e-125 453.4 419 62.8
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 4.2e-125 452.2 448 60.0
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 5.5e-125 451.8 492 56.5
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 9.4e-125 451.1 473 59.8
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 1.2e-124 450.7 461 58.8
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 1.6e-124 450.3 450 57.8
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 4.7e-124 448.7 448 59.8
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 1.0e-123 447.6 438 61.2
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 1.4e-123 447.2 445 59.1
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 5.2e-123 445.3 448 59.6
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 6.8e-123 444.9 442 60.0
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 5.7e-122 441.8 487 54.8
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 7.5e-122 441.4 485 56.5
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 2.2e-121 439.9 492 56.1
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 3.7e-121 439.1 400 65.5
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 8.3e-121 438.0 450 59.3
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 1.1e-120 437.6 440 58.6
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 1.1e-120 437.6 474 57.0
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 2.4e-120 436.4 484 57.0
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 1.6e-119 433.7 511 53.4
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 3.5e-119 432.6 475 54.1
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 4.5e-119 432.2 414 60.1
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 7.7e-119 431.4 426 61.7
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.3e-118 429.9 484 55.0
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 2.9e-118 429.5 490 53.9
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 5.0e-118 428.7 479 55.5
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.1e-117 427.6 484 55.8
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 1.1e-117 427.6 474 54.2
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 5.6e-117 425.2 436 58.3
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 6.1e-116 421.8 444 57.4
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 8.9e-115 417.9 419 59.4
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 1.2e-114 417.5 518 51.0
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 1.5e-114 417.2 422 60.2
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 2.2e-113 413.3 484 54.5
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 9.2e-112 407.9 503 51.5
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 1.6e-111 407.1 436 59.4
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 1.9e-109 400.2 422 58.1
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 7.3e-109 398.3 435 55.9
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 7.3e-109 398.3 459 57.7
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 9.5e-109 397.9 422 58.5
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 6.2e-108 395.2 422 57.8
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 3.1e-107 392.9 422 56.4
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 5.2e-107 392.1 435 55.9
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 8.9e-107 391.3 432 56.2
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 8.9e-107 391.3 431 55.2
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 1.2e-106 391.0 407 59.7
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 1.2e-106 391.0 427 56.7
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 1.5e-106 390.6 444 55.9
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 2.9e-105 386.3 463 52.7
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 4.9e-105 385.6 461 53.4
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.4e-104 384.0 419 58.2
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 2.4e-104 383.3 437 55.6
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 4.6e-103 379.0 449 53.9
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 2.3e-102 376.7 486 49.8
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 1.1e-101 374.4 458 53.5
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 2.5e-101 373.2 497 52.1
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 1.2e-100 370.9 433 56.1
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 4.4e-98 362.5 436 53.9
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 4.4e-98 362.5 396 57.6
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 1.4e-96 357.5 491 50.5
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 3.2e-96 356.3 434 53.9
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 1.0e-94 351.3 518 48.6
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 5.1e-94 349.0 438 53.2
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.1e-93 347.8 380 54.7
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 1.9e-93 347.1 422 51.7
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 5.2e-91 339.0 428 49.5
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 1.5e-90 337.4 436 49.1
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 5.8e-90 335.5 376 54.8
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 2.1e-87 327.0 439 48.7
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 3.5e-87 326.2 465 48.2
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 2.5e-85 320.1 196 81.6
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 6.2e-84 315.5 405 50.4
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 1.0e-78 298.1 428 45.8
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 1.7e-78 297.4 171 85.4
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 1.9e-77 293.9 313 58.8
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 5.6e-77 292.4 500 42.6
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 2.8e-76 290.0 470 43.8
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 7.6e-74 282.0 493 43.6
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 2.4e-72 276.9 192 73.4
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 1.2e-71 274.6 308 55.8
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 4.6e-71 272.7 483 42.2
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 5.6e-69 265.8 370 50.5
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 1.1e-67 261.5 356 50.0
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 9.0e-59 231.9 296 52.4
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 6.5e-57 225.7 489 39.7
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 9.3e-56 221.9 128 84.4
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 8.2e-52 208.8 365 41.4
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 2.2e-49 200.7 171 64.9
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 1.7e-41 174.5 414 36.5
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 6.7e-38 162.5 171 49.7
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 1.1e-37 161.8 380 35.8
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 5.3e-35 152.9 157 51.6
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 3.6e-31 140.2 311 38.3
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.6e-26 124.8 96 67.7
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 4.5e-26 123.2 401 28.7
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 8.5e-25 119.0 65 89.2
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 1.1e-24 118.6 295 37.6
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 2.8e-20 104.0 97 59.8
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.8e-19 101.3 116 53.4
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 1.6e-18 98.2 125 50.4
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 1.7e-17 94.7 112 50.9
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 6.5e-17 92.8 73 71.2
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 1.5e-16 91.7 382 29.8
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 1.5e-16 91.7 382 29.8
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 4.0e-14 83.6 49 79.6
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 5.7e-13 79.7 226 31.9
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 4.1e-11 73.6 90 50.0
Lsat_1_v5_gn_8_116700 Lactuca sativa HOM05D000230 ORTHO05D000176 3.0e-06 57.4 126 31.0


User provided reference genes

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