Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 4.1e-147 524.6 249 100.0
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.6e-141 505.4 249 96.0
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.5e-133 479.6 249 92.0
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 1.4e-131 473.0 249 88.4
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 9.1e-131 470.3 249 88.4
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 4.5e-130 468.0 249 88.4
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 5.9e-130 467.6 249 88.0
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 3.8e-129 464.9 249 88.4
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.2e-127 459.9 249 87.6
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 4.8e-116 421.4 251 78.9
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 7.8e-98 360.9 193 86.5
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 8.0e-95 350.9 249 69.1
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 2.8e-87 325.9 293 59.0
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 2.4e-83 312.8 249 58.2
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 1.2e-82 310.5 249 61.0
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 2.7e-82 309.3 241 64.7
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 3.9e-81 305.4 249 59.4
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 3.3e-80 302.4 249 59.4
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 1.2e-77 293.9 250 57.6
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 8.4e-76 287.7 249 55.8
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 1.1e-75 287.3 238 57.1
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 5.4e-75 285.0 238 57.1
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 9.2e-75 284.3 238 55.9
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 1.6e-74 283.5 249 56.2
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 7.8e-74 281.2 249 54.2
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 3.0e-73 279.3 253 53.8
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 4.3e-72 275.4 255 51.8
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 1.6e-71 273.5 248 54.0
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 8.1e-71 271.2 249 54.6
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 2.4e-70 269.6 253 52.6
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 3.1e-70 269.2 239 56.1
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 6.9e-70 268.1 251 53.0
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 7.6e-69 264.6 249 52.2
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 2.9e-68 262.7 245 52.2
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 4.9e-68 261.9 241 54.4
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 4.2e-67 258.8 231 54.5
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 9.3e-67 257.7 251 52.6
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 2.7e-66 256.1 254 52.0
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 3.5e-66 255.8 250 51.2
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 3.5e-66 255.8 252 52.4
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 3.5e-66 255.8 252 53.6
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 1.7e-65 253.4 253 51.4
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 3.0e-65 252.7 253 51.4
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 6.6e-65 251.5 249 50.2
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 2.5e-64 249.6 257 52.5
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 9.6e-64 247.7 251 52.6
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 9.6e-64 247.7 251 52.2
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 1.6e-63 246.9 249 48.6
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 2.8e-63 246.1 252 50.0
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 2.8e-63 246.1 247 49.8
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 1.4e-62 243.8 248 48.4
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 4.0e-62 242.3 239 50.6
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 5.3e-62 241.9 249 48.2
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 9.0e-62 241.1 209 55.0
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 5.8e-61 238.4 242 49.6
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 5.8e-61 238.4 246 48.4
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 1.3e-60 237.3 252 45.6
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 1.3e-60 237.3 244 48.8
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 1.7e-60 236.9 255 49.0
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 2.2e-60 236.5 252 48.0
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 4.9e-60 235.3 245 49.0
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 4.9e-60 235.3 252 48.8
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 6.4e-60 235.0 220 51.4
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 6.4e-60 235.0 258 48.4
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 6.4e-60 235.0 253 47.8
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 1.9e-59 233.4 248 47.6
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 2.4e-59 233.0 256 48.0
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 2.7e-58 229.6 203 53.7
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 7.9e-58 228.0 245 51.0
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 1.0e-57 227.6 237 49.8
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 1.3e-57 227.3 239 50.6
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 1.8e-57 226.9 249 46.6
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 2.3e-57 226.5 237 49.4
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 2.3e-57 226.5 250 48.4
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 3.0e-57 226.1 252 50.0
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 6.7e-57 224.9 253 47.8
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 8.7e-57 224.6 210 50.0
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 1.5e-56 223.8 257 44.4
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 1.5e-56 223.8 247 46.6
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.9e-56 223.4 193 63.2
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 2.5e-56 223.0 250 46.0
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 4.3e-56 222.2 249 43.0
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 4.3e-56 222.2 238 50.0
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 4.3e-56 222.2 252 45.6
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 5.6e-56 221.9 252 48.0
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 5.6e-56 221.9 237 48.9
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 5.6e-56 221.9 252 48.8
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 7.4e-56 221.5 253 47.8
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 9.6e-56 221.1 257 45.5
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 9.6e-56 221.1 259 44.8
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 1.8e-54 216.9 176 59.1
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 2.4e-54 216.5 239 45.6
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 3.1e-54 216.1 249 42.2
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 3.1e-54 216.1 249 42.2
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 3.1e-54 216.1 249 42.2
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 3.1e-54 216.1 213 48.8
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 4.0e-54 215.7 182 56.0
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 4.0e-54 215.7 241 46.5
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 6.9e-54 214.9 257 44.0
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 6.9e-54 214.9 253 43.9
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 6.9e-54 214.9 196 55.6
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 9.0e-54 214.5 249 46.6
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 2.0e-53 213.4 247 45.3
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 4.5e-53 212.2 266 42.9
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 4.5e-53 212.2 228 48.7
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 4.5e-53 212.2 250 47.2
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 7.6e-53 211.5 252 47.2
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 9.9e-53 211.1 250 42.4
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 1.3e-52 210.7 197 53.8
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 2.2e-52 209.9 240 46.7
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 6.4e-52 208.4 247 44.9
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 6.4e-52 208.4 221 46.6
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 1.1e-51 207.6 273 39.9
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 1.9e-51 206.8 259 42.1
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 3.2e-51 206.1 273 45.1
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 4.2e-51 205.7 251 42.2
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 4.2e-51 205.7 251 42.2
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 7.1e-51 204.9 273 45.1
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 4.6e-50 202.2 253 45.1
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 1.3e-49 200.7 234 46.6
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 1.8e-49 200.3 224 47.3
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 2.3e-49 199.9 203 45.3
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 6.7e-49 198.4 298 41.3
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 8.7e-49 198.0 251 41.4
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 8.7e-49 198.0 251 41.4
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 3.3e-48 196.1 253 43.1
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 2.1e-47 193.4 260 43.5
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 3.7e-47 192.6 198 47.5
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 6.2e-47 191.8 255 43.1
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 4.0e-46 189.1 195 48.2
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 6.9e-46 188.3 194 47.9
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 9.0e-46 188.0 274 39.4
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 1.2e-45 187.6 273 39.9
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 1.5e-45 187.2 230 45.7
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.3e-44 184.1 230 45.2
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 1.7e-44 183.7 272 38.6
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 1.9e-43 180.3 222 45.0
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 3.2e-43 179.5 162 55.6
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 2.7e-42 176.4 271 37.6
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 2.7e-42 176.4 221 42.5
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 3.5e-42 176.0 251 43.0
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 3.0e-41 172.9 273 37.0
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 1.1e-40 171.0 163 50.3
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 1.9e-40 170.2 196 43.9
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 9.7e-40 167.9 256 37.5
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 1.4e-38 164.1 162 49.4
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 1.8e-38 163.7 164 48.8
PGSC0003DMG400013536 Solanum tuberosum HOM05D003612 ORTHO05D004323 2.4e-38 163.3 87 87.4
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 4.1e-38 162.5 239 39.7
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 6.9e-38 161.8 189 46.6
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 2.9e-36 156.4 235 39.1
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 5.0e-36 155.6 154 51.3
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 1.8e-33 147.1 285 31.9
Peaxi162Scf00002g03215 Petunia axillaris HOM05D003612 ORTHO05D004323 1.1e-32 144.4 137 56.2
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 1.5e-32 144.1 69 94.2
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 1.3e-31 141.0 131 52.7
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.3e-31 141.0 249 37.3
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 6.3e-31 138.7 217 37.8
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 1.1e-30 137.9 206 34.5
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 2.2e-28 130.2 127 52.0
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 2.9e-28 129.8 223 33.6
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 1.9e-27 127.1 194 39.7
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 9.4e-27 124.8 301 27.6
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 2.1e-26 123.6 228 34.2
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 1.0e-25 121.3 150 39.3
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 1.8e-25 120.6 224 33.5
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 5.1e-25 119.0 100 59.0
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 8.8e-25 118.2 162 41.4
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 3.3e-24 116.3 132 50.8
PSO339G4790 Papaver somniferum HOM05D003612 ORTHO05D004323 2.7e-18 96.7 147 38.1
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 1.0e-17 94.7 249 28.5
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 5.2e-17 92.4 65 64.6
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 4.4e-16 89.4 249 28.1
Duzib093G1009 Durio zibethinus HOM05D003612 ORTHO05D004323 9.7e-16 88.2 102 42.2
Glyma.03G134401 Glycine max HOM05D003612 ORTHO05D004323 2.8e-15 86.7 94 43.6
CBR_g2822 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-14 84.3 178 28.7
SEGI_36865 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 9.1e-14 81.6 74 54.1
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 2.6e-13 80.1 81 51.9
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 1.5e-11 74.3 236 26.7
Lj1A1127T48 Lonicera japonica HOM05D003612 ORTHO05D004323 6.7e-09 65.5 43 60.5
QL07p002858 Quercus lobata HOM05D003612 ORTHO05D004323 2.0e-08 63.9 86 41.9
Cfa015703 Carpinus fangiana HOM05D003612 ORTHO05D004323 5.3e-06 55.8 57 49.1
GSVIVG01033244001 Vitis vinifera HOM05D003612 ORTHO05D004323 5.3e-06 55.8 64 46.9


User provided reference genes

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