Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004376g0170 Nicotiana tabacum HOM05D002578 ORTHO05D009557 3.0e-44 181.4 90 100.0
Nitab4.5_0004430g0050 Nicotiana tabacum HOM05D002578 ORTHO05D002698 4.0e-28 127.9 79 83.5
Hund29685 Selenicereus undatus HOM05D002578 ORTHO05D009557 3.9e-23 111.3 94 64.9
Hund30542 Selenicereus undatus HOM05D002578 ORTHO05D009557 3.9e-23 111.3 94 64.9
Hund31295 Selenicereus undatus HOM05D002578 ORTHO05D009557 3.9e-23 111.3 94 64.9
MBI12_g26681_MAGBIO Magnolia biondii HOM05D002578 ORTHO05D009557 3.8e-18 94.7 121 44.6
Lsat_1_v5_gn_3_113300 Lactuca sativa HOM05D002578 ORTHO05D005154 2.1e-13 79.0 61 68.9
CAN.G114.8 Capsicum annuum HOM05D002578 ORTHO05D002698 4.7e-13 77.8 52 78.8
Peaxi162Scf00299g00118 Petunia axillaris HOM05D002578 ORTHO05D005154 4.7e-13 77.8 52 78.8
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 4.7e-13 77.8 52 78.8
Peaxi162Scf00299g00117 Petunia axillaris HOM05D000540 ORTHO05D009557 6.2e-13 77.4 37 97.3
Nitab4.5_0000382g0100 Nicotiana tabacum HOM05D002578 ORTHO05D002698 1.4e-12 76.3 56 73.2
Potri.013G137688 Populus trichocarpa HOM05D000540 ORTHO05D009557 1.8e-12 75.9 37 94.6
Hma1.2p1_0192F.1_g083730 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 2.4e-12 75.5 37 94.6
Hma1.2p1_0247F.1_g101832 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 2.4e-12 75.5 37 94.6
Hma1.2p1_0298F.1_g117734 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 2.4e-12 75.5 37 94.6
Hma1.2p1_0818F.1_g223303 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 2.4e-12 75.5 37 94.6
Potri.005G154674 Populus trichocarpa HOM05D000540 ORTHO05D009557 2.4e-12 75.5 37 91.9
DCAR_032526 Daucus carota HOM05D000540 ORTHO05D009557 3.1e-12 75.1 37 91.9
Gohir.A12G089750 Gossypium hirsutum HOM05D000540 ORTHO05D009557 3.1e-12 75.1 37 91.9
PSO548G0068 Papaver somniferum HOM05D000540 ORTHO05D009557 5.3e-12 74.3 37 91.9
Cfa007862 Carpinus fangiana HOM05D002578 ORTHO05D002698 6.9e-12 73.9 38 86.8
Hma1.2p1_0192F.1_g083740 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 6.9e-12 73.9 52 75.0
Hma1.2p1_0247F.1_g101834 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 6.9e-12 73.9 52 75.0
Hma1.2p1_0298F.1_g117736 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 6.9e-12 73.9 52 75.0
Hma1.2p1_0818F.1_g223301 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 6.9e-12 73.9 52 75.0
Lj2P692T49 Lonicera japonica HOM05D000540 ORTHO05D009557 6.9e-12 73.9 39 84.6
PGR111G0101 Punica granatum HOM05D000540 ORTHO05D009557 6.9e-12 73.9 37 89.2
Gorai.005G167500 Gossypium raimondii HOM05D000540 ORTHO05D009557 9.0e-12 73.6 35 94.3
Medtr3g035720 Medicago truncatula HOM05D000540 ORTHO05D009557 9.0e-12 73.6 37 89.2
Medtr4g051420 Medicago truncatula HOM05D000540 ORTHO05D009557 9.0e-12 73.6 37 89.2
Potri.011G074301 Populus trichocarpa HOM05D000540 ORTHO05D009557 9.0e-12 73.6 37 91.9
SGA_v2.0_scaffold907G53717 Striga asiatica HOM05D002578 ORTHO05D002698 9.0e-12 73.6 51 76.5
Oeu060398.1 Olea europaea HOM05D002578 ORTHO05D002698 1.2e-11 73.2 52 76.9
Gorai.004G123300 Gossypium raimondii HOM05D000540 ORTHO05D009557 2.0e-11 72.4 37 86.5
HanXRQChr10g0318011 Helianthus annuus HOM05D000540 ORTHO05D009557 2.0e-11 72.4 37 86.5
Lsat_1_v5_gn_0_41560 Lactuca sativa HOM05D000540 ORTHO05D000681 2.0e-11 72.4 37 86.5
Lsat_1_v5_gn_3_22600 Lactuca sativa HOM05D000540 ORTHO05D000681 2.0e-11 72.4 37 86.5
Lalb_Chr25g0283401 Lupinus albus HOM05D000540 ORTHO05D009557 2.0e-11 72.4 37 86.5
Nitab4.5_0004697g0040 Nicotiana tabacum HOM05D002578 ORTHO05D002698 2.0e-11 72.4 52 75.0
CARHR282280 Cardamine hirsuta HOM05D000540 ORTHO05D009557 2.6e-11 72.0 37 86.5
HanXRQChr16g0500141 Helianthus annuus HOM05D002578 ORTHO05D002698 3.4e-11 71.6 52 73.1
arahy.Tifrunner.gnm1.ann1.YHR3P6 Arachis hypogaea HOM05D000540 ORTHO05D009557 4.4e-11 71.2 37 86.5
C03p38140 Brassica napus HOM05D000540 ORTHO05D009557 5.8e-11 70.9 37 83.8
C09p40100 Brassica napus HOM05D000540 ORTHO05D000681 5.8e-11 70.9 37 83.8
BolSC35t60674H Brassica oleracea HOM05D000540 ORTHO05D009557 5.8e-11 70.9 37 83.8
BolSC35t60725H Brassica oleracea HOM05D000540 ORTHO05D000681 5.8e-11 70.9 37 83.8
BraSC59t46567Z Brassica rapa HOM05D000540 ORTHO05D009557 5.8e-11 70.9 37 83.8
TPR.G22135 Trifolium pratense HOM05D002578 ORTHO05D002698 5.8e-11 70.9 38 84.2
Ah.10g027310 Amaranthus hybridus HOM05D002578 ORTHO05D002698 7.6e-11 70.5 38 86.8
Ah.10g027440 Amaranthus hybridus HOM05D002578 ORTHO05D005154 7.6e-11 70.5 38 86.8
Ah.10g029000 Amaranthus hybridus HOM05D002578 ORTHO05D002698 7.6e-11 70.5 38 86.8
Gohir.D06G105033 Gossypium hirsutum HOM05D000540 ORTHO05D009557 7.6e-11 70.5 37 86.5
Nitab4.5_0001783g0160 Nicotiana tabacum HOM05D000540 ORTHO05D009557 9.9e-11 70.1 37 86.5
CARHR114570 Cardamine hirsuta HOM05D000540 ORTHO05D009557 1.3e-10 69.7 37 83.8
HanXRQChr00c0593g0576411 Helianthus annuus HOM05D002578 ORTHO05D002698 1.3e-10 69.7 52 71.2
HanXRQChr01g0020181 Helianthus annuus HOM05D002578 ORTHO05D005154 1.3e-10 69.7 52 71.2
HanXRQChr04g0127451 Helianthus annuus HOM05D002578 ORTHO05D005154 1.3e-10 69.7 52 71.2
HanXRQChr05g0152531 Helianthus annuus HOM05D002578 ORTHO05D002698 1.3e-10 69.7 52 71.2
HanXRQChr10g0284421 Helianthus annuus HOM05D002578 ORTHO05D005154 1.3e-10 69.7 52 71.2
HanXRQChr11g0321141 Helianthus annuus HOM05D002578 ORTHO05D002698 1.3e-10 69.7 52 71.2
HanXRQChr11g0327011 Helianthus annuus HOM05D002578 ORTHO05D002698 1.3e-10 69.7 52 71.2
HanXRQChr12g0369891 Helianthus annuus HOM05D002578 ORTHO05D005154 1.3e-10 69.7 52 71.2
HanXRQCPg0580221 Helianthus annuus HOM05D002578 ORTHO05D005154 1.3e-10 69.7 52 71.2
Lsat_1_v5_gn_3_22620 Lactuca sativa HOM05D002578 ORTHO05D005154 1.3e-10 69.7 52 71.2
Lsat_1_v5_gn_5_50481 Lactuca sativa HOM05D002578 ORTHO05D002698 1.3e-10 69.7 52 71.2
Lj2g0018876 Lotus japonicus HOM05D002578 ORTHO05D002698 1.3e-10 69.7 38 84.2
Medtr0002s0360 Medicago truncatula HOM05D000540 ORTHO05D000681 1.3e-10 69.7 36 83.3
Medtr0002s0800 Medicago truncatula HOM05D000540 ORTHO05D000681 1.3e-10 69.7 36 83.3
arahy.Tifrunner.gnm1.ann1.900JYR Arachis hypogaea HOM05D002578 ORTHO05D002698 1.7e-10 69.3 37 86.5
arahy.Tifrunner.gnm1.ann1.MT7PBJ Arachis hypogaea HOM05D002578 ORTHO05D002698 1.7e-10 69.3 37 86.5
Ciclev10005921m.g Citrus clementina HOM05D002578 ORTHO05D002698 1.7e-10 69.3 48 72.9
Lsat_1_v5_gn_5_50501 Lactuca sativa HOM05D000540 ORTHO05D009557 1.7e-10 69.3 37 83.8
BolC9t56905H Brassica oleracea HOM05D000540 ORTHO05D009557 2.2e-10 68.9 37 83.8
CiPaw.03G067300 Carya illinoinensis HOM05D002578 ORTHO05D002698 2.2e-10 68.9 56 58.9
Lalb_Chr03g0038431 Lupinus albus HOM05D002578 ORTHO05D002698 2.2e-10 68.9 59 57.6
Hund04059 Selenicereus undatus HOM05D000540 ORTHO05D009557 2.2e-10 68.9 34 94.1
Hund19321 Selenicereus undatus HOM05D000540 ORTHO05D009557 2.2e-10 68.9 34 94.1
Hund26846 Selenicereus undatus HOM05D000540 ORTHO05D009557 2.2e-10 68.9 34 94.1
Hund27592 Selenicereus undatus HOM05D000540 ORTHO05D009557 2.2e-10 68.9 34 94.1
Hund27964 Selenicereus undatus HOM05D000540 ORTHO05D009557 2.2e-10 68.9 34 94.1
Hund28044 Selenicereus undatus HOM05D000540 ORTHO05D009557 2.2e-10 68.9 34 94.1
Hund28461 Selenicereus undatus HOM05D000540 ORTHO05D009557 2.2e-10 68.9 34 94.1
Hund28465 Selenicereus undatus HOM05D000540 ORTHO05D009557 2.2e-10 68.9 34 94.1
Hund28634 Selenicereus undatus HOM05D000540 ORTHO05D009557 2.2e-10 68.9 34 94.1
Hund29039 Selenicereus undatus HOM05D000540 ORTHO05D009557 2.2e-10 68.9 34 94.1
Hund29219 Selenicereus undatus HOM05D000540 ORTHO05D009557 2.2e-10 68.9 34 94.1
Hund29502 Selenicereus undatus HOM05D000540 ORTHO05D009557 2.2e-10 68.9 34 94.1
Hund29527 Selenicereus undatus HOM05D000540 ORTHO05D009557 2.2e-10 68.9 34 94.1
Hund29546 Selenicereus undatus HOM05D000540 ORTHO05D009557 2.2e-10 68.9 34 94.1
Hund29570 Selenicereus undatus HOM05D000540 ORTHO05D009557 2.2e-10 68.9 34 94.1
Hund29607 Selenicereus undatus HOM05D000540 ORTHO05D009557 2.2e-10 68.9 34 94.1
Hund29614 Selenicereus undatus HOM05D000540 ORTHO05D009557 2.2e-10 68.9 34 94.1
Hund29663 Selenicereus undatus HOM05D000540 ORTHO05D009557 2.2e-10 68.9 34 94.1
Hund29959 Selenicereus undatus HOM05D000540 ORTHO05D009557 2.2e-10 68.9 34 94.1
Hund30110 Selenicereus undatus HOM05D000540 ORTHO05D009557 2.2e-10 68.9 34 94.1
Hund30114 Selenicereus undatus HOM05D000540 ORTHO05D009557 2.2e-10 68.9 34 94.1
Hund30274 Selenicereus undatus HOM05D000540 ORTHO05D009557 2.2e-10 68.9 34 94.1
Hund30581 Selenicereus undatus HOM05D000540 ORTHO05D009557 2.2e-10 68.9 34 94.1
Hund31045 Selenicereus undatus HOM05D000540 ORTHO05D000681 2.2e-10 68.9 34 94.1
Gohir.A02G076002 Gossypium hirsutum HOM05D000540 ORTHO05D009557 2.9e-10 68.6 36 86.1
Nn070s42374 Nelumbo nucifera HOM05D002578 ORTHO05D002698 3.8e-10 68.2 38 84.2
QL02p048586 Quercus lobata HOM05D002578 ORTHO05D002698 3.8e-10 68.2 37 83.8
Ca_04123_v3 Cicer arietinum L. HOM05D002578 ORTHO05D002698 4.9e-10 67.8 37 83.8
Glyma.05G001100 Glycine max HOM05D002578 ORTHO05D002698 4.9e-10 67.8 50 62.0
HanXRQChr00c0394g0574521 Helianthus annuus HOM05D002578 ORTHO05D002698 4.9e-10 67.8 53 69.8
Hma1.2p1_0104F.1_g050125 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 4.9e-10 67.8 38 84.2
DCAR_032525 Daucus carota HOM05D002578 ORTHO05D002698 6.4e-10 67.4 51 70.6
Lj1g0008959 Lotus japonicus HOM05D002578 ORTHO05D002698 8.4e-10 67.0 38 78.9
Oeu054717.1 Olea europaea HOM05D002578 ORTHO05D002698 8.4e-10 67.0 57 64.9
PSO541G1563 Papaver somniferum HOM05D000540 ORTHO05D009557 8.4e-10 67.0 36 77.8
PSO548G0035 Papaver somniferum HOM05D002578 ORTHO05D002698 8.4e-10 67.0 38 84.2
PSO675G4368 Papaver somniferum HOM05D000540 ORTHO05D009557 8.4e-10 67.0 36 77.8
Phvul.004G001400 Phaseolus vulgaris HOM05D002578 ORTHO05D002698 8.4e-10 67.0 37 81.1
Gohir.1Z049734 Gossypium hirsutum HOM05D002578 ORTHO05D002698 1.1e-09 66.6 38 81.6
Gohir.D01G102177 Gossypium hirsutum HOM05D002578 ORTHO05D002698 1.1e-09 66.6 38 81.6
Gohir.D04G028750 Gossypium hirsutum HOM05D000540 ORTHO05D009557 1.1e-09 66.6 37 83.8
Gorai.009G325200 Gossypium raimondii HOM05D002578 ORTHO05D002698 1.1e-09 66.6 38 81.6
VMungo0464G0334 Vigna mungo HOM05D002578 ORTHO05D002698 1.1e-09 66.6 50 64.0
HanXRQChr10g0318021 Helianthus annuus HOM05D002578 ORTHO05D005154 1.4e-09 66.2 35 88.6
Lj2P1239T81 Lonicera japonica HOM05D002578 ORTHO05D002698 1.4e-09 66.2 35 88.6
Lju5009P0T59 Lonicera japonica HOM05D002578 ORTHO05D002698 1.4e-09 66.2 35 88.6
Nitab4.5_0013360g0010 Nicotiana tabacum HOM05D002578 ORTHO05D005154 1.9e-09 65.9 35 85.7
Glyma.19G001100 Glycine max HOM05D002578 ORTHO05D002698 2.4e-09 65.5 50 60.0
Medtr7g100410 Medicago truncatula HOM05D002578 ORTHO05D002698 2.4e-09 65.5 37 81.1
Gohir.1Z049366 Gossypium hirsutum HOM05D002578 ORTHO05D002698 3.2e-09 65.1 38 78.9
Lj2C1234G17 Lonicera japonica HOM05D002578 ORTHO05D002698 3.2e-09 65.1 35 85.7
RcHm_v2.0_CPg0501841 Rosa chinensis HOM05D002578 ORTHO05D002698 3.2e-09 65.1 36 86.1
Gohir.A12G024432 Gossypium hirsutum HOM05D002578 ORTHO05D002698 4.2e-09 64.7 36 83.3
C09p40110 Brassica napus HOM05D002578 ORTHO05D002698 5.4e-09 64.3 56 62.5
BolC9t56906H Brassica oleracea HOM05D002578 ORTHO05D002698 5.4e-09 64.3 56 62.5
BolSC35t60673H Brassica oleracea HOM05D002578 ORTHO05D002698 5.4e-09 64.3 56 62.5
Prupe.4G266600 Prunus persica HOM05D000540 ORTHO05D009557 5.4e-09 64.3 36 86.1
RcHm_v2.0_Chr1g0329561 Rosa chinensis HOM05D002578 ORTHO05D002698 5.4e-09 64.3 33 90.9
Sed0005264 Sechium edule HOM05D002578 ORTHO05D002698 5.4e-09 64.3 38 78.9
AL2G20520 Arabidopsis lyrata HOM05D002578 ORTHO05D002698 7.1e-09 63.9 37 81.1
AL2G21760 Arabidopsis lyrata HOM05D002578 ORTHO05D002698 7.1e-09 63.9 37 81.1
ATCG00810 Arabidopsis thaliana HOM05D002578 ORTHO05D002698 7.1e-09 63.9 37 81.1
PGR111G0094 Punica granatum HOM05D002578 ORTHO05D002698 9.3e-09 63.5 37 83.8
FvH4_6g09000 Fragaria vesca HOM05D000445 ORTHO05D000314 1.2e-08 63.2 30 96.7
Psat1g052200 Pisum sativum HOM05D002578 ORTHO05D002698 1.2e-08 63.2 37 73.0
SMO086G0012 Selaginella moellendorffii HOM05D000540 ORTHO05D009557 1.2e-08 63.2 37 70.3
BolSC29t60613H Brassica oleracea HOM05D002578 ORTHO05D002698 1.6e-08 62.8 35 82.9
FAN09G4709 Fragaria x ananassa HOM05D002578 ORTHO05D002698 1.6e-08 62.8 36 83.3
Potri.019G013302 Populus trichocarpa HOM05D000540 ORTHO05D009557 1.6e-08 62.8 36 80.6
AL1G45060 Arabidopsis lyrata HOM05D002578 ORTHO05D002698 2.7e-08 62.0 37 78.4
ClCG04G000500 Citrullus lanatus HOM05D002578 ORTHO05D002698 3.5e-08 61.6 35 80.0
BolC7t41707H Brassica oleracea HOM05D002578 ORTHO05D002698 7.8e-08 60.5 33 84.8
MBI12_g23294_MAGBIO Magnolia biondii HOM05D000540 ORTHO05D009557 1.0e-07 60.1 37 75.7
HPP92_007212 Vanilla planifolia HOM05D002578 ORTHO05D002698 1.0e-07 60.1 51 62.7
Gorai.001G190500 Gossypium raimondii HOM05D002578 ORTHO05D002698 2.3e-07 58.9 35 77.1
Atru.chr11.440 Acer truncatum HOM05D002578 ORTHO05D005154 6.6e-07 57.4 35 77.1
Aqoxy3G00098 Aquilegia oxysepala HOM05D000540 ORTHO05D009557 6.6e-07 57.4 36 69.4
HanXRQChr16g0503671 Helianthus annuus HOM05D002578 ORTHO05D002698 8.7e-07 57.0 52 59.6
MCO09G075 Micromonas commoda HOM05D002578 ORTHO05D002698 8.7e-07 57.0 37 62.2
Zm00001eb435110 Zea mays HOM05D002578 ORTHO05D002698 8.7e-07 57.0 42 64.3
Zm00001eb437150 Zea mays HOM05D002578 ORTHO05D002698 8.7e-07 57.0 42 64.3
ECA236G4531 Erigeron canadensis HOM05D000540 ORTHO05D009557 1.1e-06 56.6 37 67.6
Sc25g0002070 Simmondsia chinensis HOM05D002578 ORTHO05D005154 1.1e-06 56.6 30 86.7
HanXRQChr11g0337241 Helianthus annuus HOM05D000540 ORTHO05D009557 1.9e-06 55.8 37 67.6
HanXRQChr15g0494391 Helianthus annuus HOM05D000540 ORTHO05D009557 1.9e-06 55.8 37 67.6
Lsat_1_v5_gn_7_110000 Lactuca sativa HOM05D000540 ORTHO05D009557 3.3e-06 55.1 36 69.4
BolSC29t60614H Brassica oleracea HOM05D000540 ORTHO05D009557 4.3e-06 54.7 30 80.0
SMO086G0008 Selaginella moellendorffii HOM05D002578 ORTHO05D002698 4.3e-06 54.7 38 63.2
arahy.Tifrunner.gnm1.ann1.CR1XRQ Arachis hypogaea HOM05D003165 ORTHO05D009557 5.6e-06 54.3 32 75.0
CDE04G1374 Ceratophyllum demersum HOM05D000540 ORTHO05D009557 5.6e-06 54.3 36 58.3
CDE07G1014 Ceratophyllum demersum HOM05D000540 ORTHO05D009557 5.6e-06 54.3 36 58.3
Oeu011524.2 Olea europaea HOM05D000218 ORTHO05D000125 7.3e-06 53.9 37 59.5
Oeu025653.1 Olea europaea HOM05D000218 ORTHO05D000125 7.3e-06 53.9 37 59.5
Sc25g0002530 Simmondsia chinensis HOM05D000540 ORTHO05D000681 7.3e-06 53.9 37 70.3
SGA_v2.0_scaffold123G33382 Striga asiatica HOM05D000540 ORTHO05D400302 7.3e-06 53.9 28 85.7
Cre13.g580850 Chlamydomonas reinhardtii HOM05D002578 ORTHO05D002698 9.6e-06 53.5 33 69.7
Migut.J00430 Erythranthe guttata HOM05D000540 ORTHO05D009557 9.6e-06 53.5 37 56.8


User provided reference genes

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