Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004300g0150 Nicotiana tabacum HOM05D002864 ORTHO05D008485 1.8e-90 335.9 165 100.0
CAN.G366.9 Capsicum annuum HOM05D002864 ORTHO05D008485 1.3e-80 303.1 185 83.8
CAN.G537.1 Capsicum annuum HOM05D002864 ORTHO05D008485 1.3e-80 303.1 185 83.8
CAN.G539.3 Capsicum annuum HOM05D002864 ORTHO05D008485 1.3e-80 303.1 185 83.8
CAN.G761.1 Capsicum annuum HOM05D002864 ORTHO05D008485 1.3e-80 303.1 185 83.8
Solyc00g500362.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 4.1e-79 298.1 189 82.0
CSS0047546 Camellia sinensis var. sinensis HOM05D002864 ORTHO05D008485 4.7e-75 284.6 188 79.8
SalBow1G5070 Salvia bowleyana HOM05D002864 ORTHO05D008485 2.3e-74 282.3 185 77.3
Lj2A1230T121 Lonicera japonica HOM05D002864 ORTHO05D008485 3.7e-72 275.0 188 77.7
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 4.9e-72 274.6 187 77.5
HanXRQChr04g0101201 Helianthus annuus HOM05D002864 ORTHO05D008485 4.9e-72 274.6 188 76.1
HanXRQMTg0579191 Helianthus annuus HOM05D002864 ORTHO05D008485 4.9e-72 274.6 188 76.1
Lsat_1_v5_gn_4_66001 Lactuca sativa HOM05D002864 ORTHO05D008485 6.3e-72 274.2 190 75.8
Lsat_1_v5_gn_7_96661 Lactuca sativa HOM05D002864 ORTHO05D008485 1.4e-71 273.1 188 76.1
CANSAT16G0032 Cannabis sativa HOM05D002864 ORTHO05D008485 7.7e-70 267.3 188 77.1
Nn1g09937 Nelumbo nucifera HOM05D002864 ORTHO05D008485 7.7e-70 267.3 188 76.1
Nn1g10176 Nelumbo nucifera HOM05D002864 ORTHO05D008485 7.7e-70 267.3 188 76.1
Ah.10g028190 Amaranthus hybridus HOM05D002864 ORTHO05D007972 8.6e-69 263.8 187 74.3
Ah.10g028740 Amaranthus hybridus HOM05D002864 ORTHO05D007972 8.6e-69 263.8 187 74.3
SGA_v2.0_scaffold420G51305 Striga asiatica HOM05D002864 ORTHO05D008485 1.9e-68 262.7 190 72.6
Solyc00g500260.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 3.3e-68 261.9 171 80.1
CARHR288210 Cardamine hirsuta HOM05D002864 ORTHO05D008485 5.6e-68 261.2 187 74.9
unitig_87.g28031 Utricularia gibba HOM05D002864 ORTHO05D008485 7.3e-68 260.8 184 74.5
A04p09410 Brassica napus HOM05D002864 ORTHO05D008485 1.2e-67 260.0 187 75.4
BolSC28t60372H Brassica oleracea HOM05D002864 ORTHO05D008485 1.2e-67 260.0 187 75.4
BraSC159t45731Z Brassica rapa HOM05D002864 ORTHO05D008485 1.2e-67 260.0 187 75.4
LjContig00315g0018050 Lotus japonicus HOM05D002864 ORTHO05D008485 1.2e-67 260.0 188 76.1
LjContig00439g0002067 Lotus japonicus HOM05D002864 ORTHO05D008485 1.2e-67 260.0 188 76.1
LjContig00446g0004288 Lotus japonicus HOM05D002864 ORTHO05D008485 1.2e-67 260.0 188 76.1
AT2G07725 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 1.6e-67 259.6 187 74.9
ATMG00210 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 1.6e-67 259.6 187 74.9
CARHR282720 Cardamine hirsuta HOM05D002864 ORTHO05D008485 1.6e-67 259.6 187 74.9
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 1.6e-67 259.6 185 75.1
TAR371G0939 Trochodendron aralioides HOM05D002864 ORTHO05D008485 3.6e-67 258.5 191 74.9
AUR62042335 Chenopodium quinoa HOM05D002864 ORTHO05D008485 4.7e-67 258.1 184 73.9
Lalb_Chr07g0190471 Lupinus albus HOM05D002864 ORTHO05D008485 4.7e-67 258.1 168 82.1
Lalb_Chr00c21g0405201 Lupinus albus HOM05D002864 ORTHO05D008485 8.0e-67 257.3 188 75.5
Lalb_Chr00c21g0405251 Lupinus albus HOM05D002864 ORTHO05D008485 8.0e-67 257.3 188 75.5
Lalb_Chr00c21g0405391 Lupinus albus HOM05D002864 ORTHO05D008485 8.0e-67 257.3 188 75.5
Lalb_Chr00c24g0407171 Lupinus albus HOM05D002864 ORTHO05D008485 8.0e-67 257.3 188 75.5
Solyc00g500312.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 8.0e-67 257.3 171 78.9
SHI26647 Sapria himalayana HOM05D002864 ORTHO05D008485 1.0e-66 256.9 184 73.9
BraSC54t46369Z Brassica rapa HOM05D002864 ORTHO05D008485 5.2e-66 254.6 187 74.3
Psat0ss7220g0040 Pisum sativum HOM05D002864 ORTHO05D008485 5.2e-66 254.6 188 75.0
Sed0011141 Sechium edule HOM05D002864 ORTHO05D008485 8.9e-66 253.8 188 75.5
Sed0025017 Sechium edule HOM05D002864 ORTHO05D008485 8.9e-66 253.8 188 75.5
Lalb_Chr11g0070141 Lupinus albus HOM05D002864 ORTHO05D008485 1.2e-65 253.4 188 75.0
Lalb_Chr11g0070221 Lupinus albus HOM05D002864 ORTHO05D008485 1.2e-65 253.4 188 75.0
arahy.Tifrunner.gnm1.ann1.ID22MY Arachis hypogaea HOM05D002864 ORTHO05D008485 3.4e-65 251.9 188 73.9
BolSC28t60317H Brassica oleracea HOM05D002864 ORTHO05D008485 9.8e-65 250.4 185 73.5
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 9.8e-65 250.4 165 78.8
BraSC48t46332Z Brassica rapa HOM05D002864 ORTHO05D008485 2.9e-64 248.8 180 75.0
PGR028G0017 Punica granatum HOM05D002864 ORTHO05D008485 2.0e-62 242.7 189 70.4
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 1.3e-61 240.0 189 69.3
Lalb_Chr00c21g0405111 Lupinus albus HOM05D002864 ORTHO05D008485 1.3e-61 240.0 186 73.1
DCAR_032433 Daucus carota HOM05D002864 ORTHO05D008485 1.6e-59 233.0 185 70.3
RhsimMtG0002800 Rhododendron simsii HOM05D002864 ORTHO05D008485 2.1e-59 232.6 173 72.8
BraSC48t46241Z Brassica rapa HOM05D002864 ORTHO05D008485 8.0e-59 230.7 184 69.6
HanXRQChr01g0001471 Helianthus annuus HOM05D002864 ORTHO05D008485 5.2e-58 228.0 188 67.0
Rhsim07G0136600 Rhododendron simsii HOM05D002864 ORTHO05D008485 8.3e-56 220.7 189 67.2
Lj2P1221T99 Lonicera japonica HOM05D002864 ORTHO05D008485 2.7e-54 215.7 156 75.6
arahy.Tifrunner.gnm1.ann1.I2EFRY Arachis hypogaea HOM05D002864 ORTHO05D008485 5.2e-50 201.4 161 71.4
ClCG09G013010 Citrullus lanatus HOM05D002864 ORTHO05D007972 2.6e-49 199.1 161 71.4
Gohir.A06G146200 Gossypium hirsutum HOM05D002864 ORTHO05D008485 4.9e-48 194.9 154 70.8
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 6.4e-48 194.5 157 67.5
SHI40661 Sapria himalayana HOM05D002864 ORTHO05D008485 1.1e-47 193.7 169 67.5
Ah.09g227250 Amaranthus hybridus HOM05D002864 ORTHO05D008485 6.6e-45 184.5 148 68.2
Gohir.D12G077000 Gossypium hirsutum HOM05D002864 ORTHO05D008485 1.8e-42 176.4 160 65.0
Solyc09g050040.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 2.6e-41 172.6 108 82.4
Lsat_1_v5_gn_7_25860 Lactuca sativa HOM05D002864 ORTHO05D008485 9.9e-41 170.6 107 83.2
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 2.9e-40 169.1 148 64.2
HanXRQChr13g0389461 Helianthus annuus HOM05D002864 ORTHO05D008485 1.4e-39 166.8 151 64.2
Zm00001eb299530 Zea mays HOM05D002864 ORTHO05D008485 7.8e-38 161.0 191 47.6
ATR0709G086 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.0e-37 159.1 135 65.2
HanXRQChr13g0393901 Helianthus annuus HOM05D002864 ORTHO05D008485 3.0e-37 159.1 115 72.2
arahy.Tifrunner.gnm1.ann1.3LP0N0 Arachis hypogaea HOM05D002864 ORTHO05D008485 1.1e-36 157.1 110 79.1
CAN.G1542.4 Capsicum annuum HOM05D002864 ORTHO05D008485 3.3e-36 155.6 111 73.9
Lsat_1_v5_gn_5_71841 Lactuca sativa HOM05D002864 ORTHO05D008485 3.3e-36 155.6 107 78.5
SEGI_29573 Sequoiadendron giganteum HOM05D002864 ORTHO05D008485 1.2e-33 147.1 185 50.3
RcHm_v2.0_Chr5g0061711 Rosa chinensis HOM05D002864 ORTHO05D008485 9.9e-33 144.1 180 52.2
HanXRQChr13g0389471 Helianthus annuus HOM05D002864 ORTHO05D008485 7.1e-31 137.9 86 82.6
FvH4_3g34030 Fragaria vesca HOM05D002864 ORTHO05D008485 4.6e-30 135.2 181 49.7
FAN11G1817 Fragaria x ananassa HOM05D002864 ORTHO05D008485 4.6e-30 135.2 181 49.7
FAN16G0826 Fragaria x ananassa HOM05D002864 ORTHO05D008485 1.3e-29 133.7 181 49.2
FAN21G0602 Fragaria x ananassa HOM05D002864 ORTHO05D008485 1.3e-29 133.7 181 49.2
Actinidia34819 Actinidia chinensis HOM05D002864 ORTHO05D008485 4.8e-27 125.2 61 93.4
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 1.8e-26 123.2 61 91.8
CAN.G826.1 Capsicum annuum HOM05D002864 ORTHO05D008485 3.1e-26 122.5 63 88.9
PGSC0003DMG400033612 Solanum tuberosum HOM05D002864 ORTHO05D008485 3.1e-26 122.5 63 92.1
CAN.G1001.40 Capsicum annuum HOM05D002864 ORTHO05D008485 9.0e-26 120.9 63 88.9
ClCG06G009270 Citrullus lanatus HOM05D002864 ORTHO05D008485 5.8e-25 118.2 101 67.3
Ca_08792_v3 Cicer arietinum L. HOM05D000255 ORTHO05D028863 1.3e-24 117.1 57 93.0
Ca_22173_v3 Cicer arietinum L. HOM05D005210 ORTHO05D010080 1.3e-24 117.1 57 93.0
MELO3C035260.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.3e-24 117.1 110 60.9
arahy.Tifrunner.gnm1.ann1.IM9F8N Arachis hypogaea HOM05D002864 ORTHO05D008485 3.8e-24 115.5 74 75.7
MELO3C000759.2 Cucumis melo HOM05D002864 ORTHO05D008485 6.4e-24 114.8 110 60.0
CAN.G1439.10 Capsicum annuum HOM05D002864 ORTHO05D008485 2.4e-23 112.8 61 86.9
ATR0015G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 2.5e-20 102.8 60 81.7
ATR0091G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 4.3e-20 102.1 63 79.4
CAN.G502.17 Capsicum annuum HOM05D002864 ORTHO05D008485 7.4e-20 101.3 58 81.0
ATR0104G021 Amborella trichopoda HOM05D002864 ORTHO05D008485 2.8e-19 99.4 59 76.3
ATR1100G026 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.1e-18 97.4 55 81.8
MELO3C035317.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.8e-18 96.7 109 54.1
arahy.Tifrunner.gnm1.ann1.G1F49J Arachis hypogaea HOM05D002864 ORTHO05D008485 4.0e-18 95.5 68 77.9
ATR0573G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 6.9e-18 94.7 59 74.6
ATR0004G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.2e-17 94.0 59 71.2
MELO3C005021.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.2e-17 94.0 109 53.2
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 3.4e-17 92.4 50 82.0
CAN.G1439.9 Capsicum annuum HOM05D002864 ORTHO05D008485 7.6e-17 91.3 50 84.0
AagrBONN_evm.TU.Sc2ySwM_117.2676 Anthoceros agrestis HOM05D002864 ORTHO05D008485 1.3e-16 90.5 184 32.1
ATR0959G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.2e-15 85.9 49 79.6
Nitab4.5_0024895g0040 Nicotiana tabacum HOM05D002864 ORTHO05D008485 3.2e-15 85.9 48 87.5
Solyc11g043190.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 3.2e-15 85.9 47 85.1
Solyc01g049950.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 2.7e-14 82.8 57 77.2
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 5.1e-13 78.6 53 71.7
Nitab4.5_0000317g0150 Nicotiana tabacum HOM05D002578 ORTHO05D002698 1.5e-12 77.0 45 80.0
Mapoly0023s0175 Marchantia polymorpha HOM05D002864 ORTHO05D008485 5.6e-12 75.1 62 69.4
Nitab4.5_0000684g0100 Nicotiana tabacum HOM05D000729 ORTHO05D001063 9.0e-10 67.8 69 52.2
ATR0135G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 2.6e-09 66.2 36 83.3
C09p10440 Brassica napus HOM05D002864 ORTHO05D008485 1.3e-08 63.9 34 85.3
Phvul.011G109300 Phaseolus vulgaris HOM05D007099 ORTHO05D009081 1.7e-08 63.5 36 75.0
MELO3C013035.2 Cucumis melo HOM05D002864 ORTHO05D008485 2.2e-08 63.2 47 66.0
Pp3c2_23470 Physcomitrium patens HOM05D002864 ORTHO05D008485 1.9e-07 60.1 55 67.3
ClCG02G008120 Citrullus lanatus HOM05D002864 ORTHO05D008485 1.6e-06 57.0 54 66.7


User provided reference genes

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