Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004284g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 5.5e-79 298.1 222 100.0
Nn4g23380 Nelumbo nucifera HOM05D006238 ORTHO05D007458 1.2e-49 200.7 233 50.2
Nitab4.5_0001410g0100 Nicotiana tabacum HOM05D006238 ORTHO05D007458 2.1e-46 189.9 258 71.7
Nitab4.5_0001961g0050 Nicotiana tabacum HOM05D006238 ORTHO05D007458 2.9e-43 179.5 293 59.0
Aa31LG3G18600 Aethionema arabicum HOM05D006238 ORTHO05D007458 4.1e-42 175.6 284 52.1
CAN.G479.27 Capsicum annuum HOM05D006238 ORTHO05D007458 3.5e-41 172.6 260 67.3
Sopen03g034410 Solanum pennellii HOM05D006238 ORTHO05D007458 3.0e-40 169.5 260 66.5
Solyc03g115410.3 Solanum lycopersicum HOM05D006238 ORTHO05D007458 8.6e-40 167.9 260 66.5
PGSC0003DMG401024548 Solanum tuberosum HOM05D006238 ORTHO05D007458 1.4e-34 150.6 263 62.0
Medtr3g023830 Medicago truncatula HOM05D006238 ORTHO05D007458 3.2e-34 149.4 262 61.8
Migut.L00004 Erythranthe guttata HOM05D006238 ORTHO05D007458 4.1e-34 149.1 262 62.6
Thecc.03G097700 Theobroma cacao HOM05D006238 ORTHO05D007458 5.4e-34 148.7 262 62.6
Solyc12g040320.2 Solanum lycopersicum HOM05D006238 ORTHO05D007458 7.1e-34 148.3 262 62.6
Oeu038367.1 Olea europaea HOM05D006238 ORTHO05D007458 1.2e-33 147.5 262 61.8
Sed0022301 Sechium edule HOM05D006238 ORTHO05D007458 1.2e-33 147.5 262 61.8
Migut.I00441 Erythranthe guttata HOM05D006238 ORTHO05D007458 2.7e-33 146.4 262 61.8
Sopen12g019730 Solanum pennellii HOM05D006238 ORTHO05D007458 2.7e-33 146.4 262 62.2
Gohir.A09G243100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 3.5e-33 146.0 262 62.2
Gohir.D09G243800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 3.5e-33 146.0 262 61.8
Gorai.006G267600 Gossypium raimondii HOM05D006238 ORTHO05D007458 3.5e-33 146.0 262 61.8
Actinidia35026 Actinidia chinensis HOM05D006238 ORTHO05D007458 4.6e-33 145.6 262 61.5
FvH4_5g14250 Fragaria vesca HOM05D006238 ORTHO05D007458 4.6e-33 145.6 260 61.9
RcHm_v2.0_Chr7g0182671 Rosa chinensis HOM05D006238 ORTHO05D007458 4.6e-33 145.6 260 61.9
Duzib205G0643 Durio zibethinus HOM05D006238 ORTHO05D007458 1.0e-32 144.4 262 61.1
Glyma.04G164100 Glycine max HOM05D006238 ORTHO05D007458 1.7e-32 143.7 262 61.5
Prupe.5G201600 Prunus persica HOM05D006238 ORTHO05D007458 1.7e-32 143.7 260 61.2
PGR044G1626 Punica granatum HOM05D006238 ORTHO05D007458 1.7e-32 143.7 262 62.2
Lj1g0017158 Lotus japonicus HOM05D006238 ORTHO05D007458 2.3e-32 143.3 262 55.7
Psat5g211960 Pisum sativum HOM05D006238 ORTHO05D007458 2.3e-32 143.3 262 59.9
CSS0008812 Camellia sinensis var. sinensis HOM05D006238 ORTHO05D007458 3.0e-32 142.9 262 59.9
Atru.chr9.382 Acer truncatum HOM05D006238 ORTHO05D007458 3.9e-32 142.5 263 60.8
CiPaw.11G050500 Carya illinoinensis HOM05D006238 ORTHO05D007458 3.9e-32 142.5 262 61.1
QL93p0191_0017 Quercus lobata HOM05D006238 ORTHO05D007458 3.9e-32 142.5 261 61.3
Cfa019307 Carpinus fangiana HOM05D006238 ORTHO05D007458 5.1e-32 142.1 262 61.1
Haze_07689 Corylus avellana HOM05D006238 ORTHO05D007458 5.1e-32 142.1 262 61.1
Lsat_1_v5_gn_4_110280 Lactuca sativa HOM05D006238 ORTHO05D007458 5.1e-32 142.1 262 61.5
MD14G1209200 Malus domestica HOM05D006238 ORTHO05D007458 5.1e-32 142.1 262 61.1
SGA_v2.0_scaffold28G11764 Striga asiatica HOM05D006238 ORTHO05D007458 5.1e-32 142.1 253 54.9
TPR.G12219 Trifolium pratense HOM05D006238 ORTHO05D007458 5.1e-32 142.1 262 61.1
Ca_13804_v3 Cicer arietinum L. HOM05D006238 ORTHO05D007458 8.6e-32 141.4 262 60.3
Potri.015G048800 Populus trichocarpa HOM05D006238 ORTHO05D007458 8.6e-32 141.4 262 58.8
QL10p018767 Quercus lobata HOM05D006238 ORTHO05D007458 8.6e-32 141.4 261 60.9
arahy.Tifrunner.gnm1.ann1.G7J9WL Arachis hypogaea HOM05D006238 ORTHO05D007458 1.1e-31 141.0 260 58.8
arahy.Tifrunner.gnm1.ann1.XMW6VU Arachis hypogaea HOM05D006238 ORTHO05D007458 1.1e-31 141.0 260 53.1
Glyma.06G201600 Glycine max HOM05D006238 ORTHO05D007458 1.1e-31 141.0 262 61.1
Lalb_Chr08g0238951 Lupinus albus HOM05D006238 ORTHO05D007458 2.5e-31 139.8 262 55.0
CANSAT80G2720 Cannabis sativa HOM05D006238 ORTHO05D007458 5.6e-31 138.7 262 59.9
Peaxi162Scf00106g00109 Petunia axillaris HOM05D006238 ORTHO05D007458 5.6e-31 138.7 278 60.1
SalBow5G1318 Salvia bowleyana HOM05D006238 ORTHO05D007458 7.3e-31 138.3 328 52.4
GSVIVG01007912001 Vitis vinifera HOM05D006238 ORTHO05D007458 7.3e-31 138.3 260 61.2
Ciclev10021749m.g Citrus clementina HOM05D006238 ORTHO05D007458 1.2e-30 137.5 260 59.6
MSTRG.22972 Avicennia marina HOM05D006238 ORTHO05D007458 1.6e-30 137.1 262 60.3
MELO3C017212.2 Cucumis melo HOM05D006238 ORTHO05D007458 1.6e-30 137.1 262 59.5
CsaV3_1G002770 Cucumis sativus L. HOM05D006238 ORTHO05D007458 1.6e-30 137.1 262 59.5
ECA232G0231 Erigeron canadensis HOM05D000954 ORTHO05D000822 1.6e-30 137.1 263 60.5
Aqoxy3G00445 Aquilegia oxysepala HOM05D006238 ORTHO05D007458 2.1e-30 136.7 262 59.5
Peaxi162Scf00201g00133 Petunia axillaris HOM05D006238 ORTHO05D007458 2.8e-30 136.3 229 68.1
Eucgr.K02503 Eucalyptus grandis HOM05D006238 ORTHO05D007458 4.7e-30 135.6 262 59.9
TWI81G0503 Tripterygium wilfordii HOM05D006238 ORTHO05D007458 4.7e-30 135.6 262 59.2
Gohir.A12G181100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 1.4e-29 134.0 262 59.9
COL.COLO4_22216 Corchorus olitorius HOM05D006238 ORTHO05D007458 2.3e-29 133.3 262 60.3
Gohir.D12G183800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 4.0e-29 132.5 262 59.5
Hund02602 Selenicereus undatus HOM05D006238 ORTHO05D007458 8.9e-29 131.3 261 59.0
EL10Ac5g11104 Beta vulgaris HOM05D006238 ORTHO05D007458 2.0e-28 130.2 261 57.5
FAN13G1324 Fragaria x ananassa HOM05D000113 ORTHO05D002571 2.0e-28 130.2 229 64.2
ClCG06G015770 Citrullus lanatus HOM05D006238 ORTHO05D007458 2.6e-28 129.8 262 58.0
ATR0064G078 Amborella trichopoda HOM05D006238 ORTHO05D007458 4.4e-28 129.0 261 59.0
PSO478G4259 Papaver somniferum HOM05D006238 ORTHO05D007458 4.4e-28 129.0 260 58.5
PSO017G1619 Papaver somniferum HOM05D006238 ORTHO05D007458 5.8e-28 128.6 260 58.1
HanXRQChr02g0042551 Helianthus annuus HOM05D006238 ORTHO05D007458 9.9e-28 127.9 262 58.4
FAN08G1023 Fragaria x ananassa HOM05D000113 ORTHO05D002571 1.3e-27 127.5 233 62.7
HanXRQChr14g0439161 Helianthus annuus HOM05D006238 ORTHO05D007458 1.7e-27 127.1 262 58.8
Lsat_1_v5_gn_1_13640 Lactuca sativa HOM05D006238 ORTHO05D007458 2.9e-27 126.3 252 59.5
Cc04_g15060 Coffea canephora HOM05D006238 ORTHO05D007458 8.4e-27 124.8 229 62.9
MD06G1200000 Malus domestica HOM05D006238 ORTHO05D007458 1.4e-26 124.0 244 50.0
Thhalv10014418m.g Eutrema salsugineum HOM05D006238 ORTHO05D007458 1.9e-26 123.6 261 56.7
THA.LOC104801299 Tarenaya hassleriana HOM05D006238 ORTHO05D007458 1.9e-26 123.6 261 56.7
PSO384G2798 Papaver somniferum HOM05D006238 ORTHO05D007458 3.2e-26 122.9 260 56.9
Sp6g35050 Schrenkiella parvula HOM05D006238 ORTHO05D007458 3.2e-26 122.9 261 56.3
ECA247G0665 Erigeron canadensis HOM05D000006 ORTHO05D007458 7.1e-26 121.7 260 58.8
BcaB05g21597 Brassica carinata HOM05D006238 ORTHO05D007458 9.2e-26 121.3 261 55.6
BcaNung04721 Brassica carinata HOM05D006238 ORTHO05D007458 1.6e-25 120.6 262 54.6
C02p03310 Brassica napus HOM05D006238 ORTHO05D007458 1.6e-25 120.6 262 54.6
BolC2t06295H Brassica oleracea HOM05D006238 ORTHO05D007458 1.6e-25 120.6 262 54.6
DCAR_016594 Daucus carota HOM05D006238 ORTHO05D007458 1.6e-25 120.6 228 63.2
Nitab4.5_0005160g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 1.6e-25 120.6 74 82.4
BraA02t04934Z Brassica rapa HOM05D006238 ORTHO05D007458 2.7e-25 119.8 262 54.6
Phvul.009G193701 Phaseolus vulgaris HOM05D006238 ORTHO05D007458 2.7e-25 119.8 67 86.6
PSO339G0502 Papaver somniferum HOM05D006238 ORTHO05D007458 6.0e-25 118.6 260 56.2
AL6G18240 Arabidopsis lyrata HOM05D006238 ORTHO05D007458 7.8e-25 118.2 261 55.2
BcaB01g05644 Brassica carinata HOM05D006238 ORTHO05D007458 1.0e-24 117.9 261 55.6
C03p03970 Brassica napus HOM05D006238 ORTHO05D007458 1.0e-24 117.9 261 55.6
BolC3t12934H Brassica oleracea HOM05D006238 ORTHO05D007458 1.0e-24 117.9 261 55.6
A03p03520 Brassica napus HOM05D006238 ORTHO05D007458 1.3e-24 117.5 261 55.6
BraA03t09702Z Brassica rapa HOM05D006238 ORTHO05D007458 1.3e-24 117.5 261 55.6
BcaB01g05687 Brassica carinata HOM05D006238 ORTHO05D007458 1.7e-24 117.1 258 55.8
BcaB01g05688 Brassica carinata HOM05D006238 ORTHO05D007458 1.7e-24 117.1 261 55.6
BcaNung04724 Brassica carinata HOM05D006238 ORTHO05D007458 3.0e-24 116.3 261 55.6
CARHR205290 Cardamine hirsuta HOM05D006238 ORTHO05D007458 3.9e-24 115.9 261 54.8
Carub.0006s0680 Capsella rubella HOM05D006238 ORTHO05D007458 6.6e-24 115.2 261 54.4
Dinv38791 Davidia involucrata HOM05D006238 ORTHO05D007458 6.6e-24 115.2 63 88.9
AT5G07910 Arabidopsis thaliana HOM05D006238 ORTHO05D007458 8.6e-24 114.8 261 54.4
Gorai.008G197100 Gossypium raimondii HOM05D006238 ORTHO05D007458 8.6e-24 114.8 229 61.1
PGSC0003DMG400005395 Solanum tuberosum HOM05D006238 ORTHO05D007458 8.6e-24 114.8 64 85.9
QL05p088277 Quercus lobata HOM05D003602 ORTHO05D007458 1.1e-23 114.4 66 81.8
Cpa.g.sc94.12 Carica papaya HOM05D006238 ORTHO05D007458 3.3e-23 112.8 68 77.9
Manes.06G087000 Manihot esculenta HOM05D006238 ORTHO05D007458 4.7e-22 109.0 63 82.5
HPP92_013436 Vanilla planifolia HOM05D001674 ORTHO05D008374 1.8e-21 107.1 262 53.1
HPP92_027112 Vanilla planifolia HOM05D006238 ORTHO05D007458 2.6e-20 103.2 68 70.6
Zm00001eb008470 Zea mays HOM05D006238 ORTHO05D007458 1.6e-17 94.0 255 53.7
Oeu062485.1 Olea europaea HOM05D006238 ORTHO05D007458 1.0e-16 91.3 75 68.0
Hund26925 Selenicereus undatus HOM05D006238 ORTHO05D007458 1.3e-16 90.9 66 66.7
AagrBONN_evm.TU.Sc2ySwM_228.2402 Anthoceros agrestis HOM05D006238 ORTHO05D007458 1.1e-15 87.8 61 62.3
Cpa.g.sc94.13 Carica papaya HOM05D006238 ORTHO05D007458 1.5e-15 87.4 75 65.3
Dinv10691 Davidia involucrata HOM05D000773 ORTHO05D000588 1.5e-15 87.4 207 60.4
Sc10g0009770 Simmondsia chinensis HOM05D006238 ORTHO05D007458 1.9e-15 87.0 73 65.8
AUR62008501 Chenopodium quinoa HOM05D006238 ORTHO05D007458 2.5e-15 86.7 75 61.3
Rhsim12G0152200 Rhododendron simsii HOM05D006238 ORTHO05D007458 1.3e-14 84.3 290 46.6
CBR_g52452 Chara braunii HOM05D006395 ORTHO05D007458 2.1e-14 83.6 101 40.6
SMO364G0258 Selaginella moellendorffii HOM05D006238 ORTHO05D007458 4.8e-14 82.4 258 48.1
AUR62021591 Chenopodium quinoa HOM05D006238 ORTHO05D007458 8.1e-14 81.6 85 56.5
Sabra15G0078500 Salix brachista HOM05D006238 ORTHO05D007458 5.3e-13 79.0 96 50.0
Mapoly0043s0125 Marchantia polymorpha HOM05D006395 ORTHO05D007894 6.9e-13 78.6 77 46.8
vmacro16511 Vaccinium macrocarpon HOM05D006238 ORTHO05D007458 4.5e-12 75.9 226 52.7
Pp3c19_5770 Physcomitrium patens HOM05D006238 ORTHO05D007458 7.6e-12 75.1 262 47.3
ATR0174G042 Amborella trichopoda HOM05D006395 ORTHO05D007894 2.9e-11 73.2 92 43.5
BcaB03g16235 Brassica carinata HOM05D006238 ORTHO05D007458 2.9e-11 73.2 57 63.2
CBR_g18689 Chara braunii HOM05D006238 ORTHO05D007458 6.4e-11 72.0 59 49.2
CDE10G0764 Ceratophyllum demersum HOM05D000773 ORTHO05D000588 1.1e-10 71.2 74 54.1
Cc03_g12890 Coffea canephora HOM05D006395 ORTHO05D007894 3.2e-10 69.7 93 40.9
Os03g0212200 Oryza sativa ssp. japonica HOM05D006238 ORTHO05D007458 7.1e-10 68.6 75 50.7
Cre12.g503600 Chlamydomonas reinhardtii HOM05D006238 ORTHO05D007458 9.3e-10 68.2 63 47.6
SMO198G0061 Selaginella moellendorffii HOM05D006395 ORTHO05D007894 1.2e-09 67.8 67 44.8
QL93p0869_0056 Quercus lobata HOM05D000176 ORTHO05D000106 1.6e-09 67.4 193 47.7
AagrBONN_evm.TU.Sc2ySwM_228.749 Anthoceros agrestis HOM05D006395 ORTHO05D007894 3.5e-09 66.2 67 44.8
PRCOL_00001761 Prasinoderma coloniale HOM05D006238 ORTHO05D007458 3.9e-08 62.8 81 37.0
MCO07G688 Micromonas commoda HOM05D006238 ORTHO05D007458 1.9e-07 60.5 93 29.0
Carub.0004s1124 Capsella rubella HOM05D006395 ORTHO05D007894 2.5e-07 60.1 72 41.7
vmacro02938 Vaccinium macrocarpon HOM05D006395 ORTHO05D007894 4.3e-07 59.3 80 38.8
Migut.D00855 Erythranthe guttata HOM05D006395 ORTHO05D007894 1.6e-06 57.4 80 40.0
FAN07G0114 Fragaria x ananassa HOM05D005731 ORTHO05D012104 1.6e-06 57.4 63 44.4
Lj5A105G57 Lonicera japonica HOM05D006238 ORTHO05D007458 1.6e-06 57.4 52 59.6
QL10p018168 Quercus lobata HOM05D006238 ORTHO05D007458 2.8e-06 56.6 54 53.7
GSVIVG01024681001 Vitis vinifera HOM05D006395 ORTHO05D007894 8.1e-06 55.1 61 44.3


User provided reference genes

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