Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 2.2e-120 435.6 222 100.0
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 6.5e-112 407.5 222 92.8
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 1.3e-101 373.2 222 86.9
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 4.1e-98 361.7 222 84.2
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 2.0e-97 359.4 222 83.8
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 4.8e-91 338.2 222 82.0
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 1.4e-82 310.1 183 89.1
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 1.0e-80 303.9 216 77.3
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 6.3e-75 284.6 222 67.6
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 4.5e-73 278.5 228 67.5
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 1.9e-71 273.1 222 67.1
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 4.2e-71 271.9 222 66.2
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 1.4e-69 266.9 222 64.4
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 6.8e-69 264.6 222 62.2
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 8.8e-69 264.2 222 63.5
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 1.1e-66 257.3 222 62.6
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 4.1e-66 255.4 235 59.6
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 1.6e-65 253.4 220 62.3
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 4.5e-65 251.9 222 61.3
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 4.5e-65 251.9 222 61.3
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 4.5e-65 251.9 222 61.3
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.0e-64 250.8 222 60.8
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 6.5e-64 248.1 222 59.5
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 2.5e-63 246.1 228 59.2
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 1.4e-58 230.3 222 53.2
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 2.4e-58 229.6 196 62.2
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 3.1e-58 229.2 223 55.2
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 4.1e-58 228.8 250 50.8
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 5.4e-58 228.4 222 53.2
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 1.7e-56 223.4 272 50.7
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 6.6e-56 221.5 222 52.3
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 8.6e-56 221.1 222 52.7
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 1.5e-55 220.3 223 53.8
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 7.3e-55 218.0 222 50.5
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 1.2e-54 217.2 148 75.7
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 1.2e-54 217.2 224 50.0
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 1.2e-54 217.2 222 50.9
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 2.1e-54 216.5 223 52.0
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 2.1e-54 216.5 224 52.7
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 2.1e-54 216.5 222 51.4
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 2.8e-54 216.1 222 51.8
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 8.0e-54 214.5 225 51.6
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 8.0e-54 214.5 225 51.6
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 1.0e-53 214.2 222 51.4
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 1.0e-53 214.2 223 51.1
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 1.4e-53 213.8 224 48.7
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.4e-53 213.8 224 49.1
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 1.4e-53 213.8 222 50.0
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 1.4e-53 213.8 222 49.1
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 1.8e-53 213.4 224 48.7
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 3.0e-53 212.6 226 52.7
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 3.0e-53 212.6 224 51.8
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 4.0e-53 212.2 224 48.2
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 5.2e-53 211.8 224 48.7
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 6.8e-53 211.5 224 48.7
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 6.8e-53 211.5 223 50.7
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 8.9e-53 211.1 224 48.7
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 8.9e-53 211.1 222 48.2
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 1.5e-52 210.3 225 51.1
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 2.0e-52 209.9 222 50.9
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 2.0e-52 209.9 225 51.6
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 3.4e-52 209.1 226 51.3
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 4.4e-52 208.8 225 51.1
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 4.4e-52 208.8 225 51.1
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 4.4e-52 208.8 226 51.8
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 7.5e-52 208.0 221 48.9
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 7.5e-52 208.0 223 50.2
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 9.8e-52 207.6 224 49.1
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 1.3e-51 207.2 225 51.6
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 1.7e-51 206.8 223 49.3
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 2.2e-51 206.5 226 50.9
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 3.7e-51 205.7 225 50.7
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 3.7e-51 205.7 225 50.7
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 3.7e-51 205.7 224 49.6
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 8.3e-51 204.5 223 48.9
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 1.1e-50 204.1 221 48.4
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 1.4e-50 203.8 223 48.9
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 1.8e-50 203.4 223 49.3
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 1.8e-50 203.4 224 50.4
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.4e-50 203.0 225 50.2
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 3.2e-50 202.6 224 50.4
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 9.2e-50 201.1 226 49.1
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 1.6e-49 200.3 223 48.4
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 1.6e-49 200.3 223 48.4
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 1.6e-49 200.3 224 47.3
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 2.7e-49 199.5 224 49.6
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 3.5e-49 199.1 226 48.7
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 3.5e-49 199.1 226 49.1
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 5.9e-49 198.4 228 48.2
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 7.8e-49 198.0 228 49.1
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 2.3e-48 196.4 228 48.7
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 3.0e-48 196.1 228 48.2
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 3.9e-48 195.7 222 49.5
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 5.0e-48 195.3 228 47.8
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 5.0e-48 195.3 228 47.8
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 5.0e-48 195.3 222 45.5
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 6.6e-48 194.9 228 47.4
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 6.6e-48 194.9 224 49.6
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 6.6e-48 194.9 228 47.8
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 8.6e-48 194.5 225 48.9
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 1.1e-47 194.1 222 49.1
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 3.3e-47 192.6 226 48.7
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 7.3e-47 191.4 226 46.5
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 9.5e-47 191.0 222 48.6
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 1.6e-46 190.3 196 52.6
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 2.8e-46 189.5 207 51.7
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 8.0e-46 188.0 224 45.5
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 8.0e-46 188.0 222 46.4
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 5.2e-45 185.3 223 45.7
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 5.2e-45 185.3 226 45.1
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 5.2e-45 185.3 222 45.0
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 1.7e-43 180.3 287 40.1
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 2.2e-43 179.9 228 44.7
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 3.7e-43 179.1 196 49.0
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 4.9e-43 178.7 222 42.8
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 5.4e-42 175.3 226 43.8
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 2.7e-41 172.9 133 65.4
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 7.8e-41 171.4 222 41.4
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 7.8e-41 171.4 222 41.4
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 2.3e-40 169.9 228 43.4
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 3.3e-39 166.0 147 59.2
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 2.8e-38 162.9 222 41.0
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 2.6e-36 156.4 222 40.1
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 3.4e-36 156.0 181 48.1
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 2.2e-35 153.3 185 49.7
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 1.1e-34 151.0 129 54.3
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 1.2e-33 147.5 222 39.2
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 1.2e-33 147.5 107 64.5
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 7.8e-33 144.8 222 38.7
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 2.3e-32 143.3 224 35.7
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 1.9e-31 140.2 187 42.2
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 7.3e-31 138.3 110 59.1
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 2.8e-30 136.3 177 42.4
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 3.6e-30 136.0 224 40.2
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 6.2e-30 135.2 165 46.7
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.0e-28 130.2 106 60.4
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 4.9e-27 125.6 126 56.3
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 1.1e-26 124.4 111 53.2
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 5.4e-26 122.1 113 50.4
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 4.7e-22 109.0 224 29.0
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.8e-21 107.1 224 31.2
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 6.9e-21 105.1 152 39.5
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 9.9e-20 101.3 222 32.4
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 3.0e-16 89.7 73 60.3
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 3.9e-16 89.4 146 39.0
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 3.9e-16 89.4 106 46.2
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.5e-15 87.4 119 44.5
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 9.6e-15 84.7 48 83.3
Hma1.2p1_1398F.1_g280823 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 3.1e-13 79.7 49 77.6
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 6.9e-13 78.6 146 37.0
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 1.5e-12 77.4 202 27.7
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 2.0e-12 77.0 87 55.2
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 3.4e-12 76.3 224 25.9
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 7.6e-12 75.1 50 70.0
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 1.3e-11 74.3 224 29.0
HanXRQChr09g0268691 Helianthus annuus HOM05D004715 ORTHO05D005644 6.0e-09 65.5 49 63.3
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 1.6e-06 57.4 113 31.9


User provided reference genes

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