Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004267g0010 Nicotiana tabacum HOM05D003762 ORTHO05D004374 5.2e-37 157.1 76 100.0
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 8.9e-21 103.2 51 98.0
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 5.8e-20 100.5 53 90.6
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 7.5e-20 100.1 51 94.1
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 4.9e-19 97.4 53 86.8
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 4.9e-19 97.4 51 92.2
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 1.3e-16 89.4 53 83.0
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 3.9e-16 87.8 51 82.4
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 9.5e-15 83.2 76 61.8
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 9.5e-15 83.2 76 61.8
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 1.2e-14 82.8 76 59.2
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 6.2e-14 80.5 76 57.9
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 8.1e-14 80.1 53 71.7
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 8.1e-14 80.1 76 57.9
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.1e-13 79.7 76 57.9
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 2.4e-13 78.6 51 76.5
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 5.2e-13 77.4 76 57.9
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 4.4e-12 74.3 76 55.3
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 3.8e-11 71.2 74 54.1
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 1.1e-10 69.7 57 61.4
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 2.4e-10 68.6 51 62.7
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 2.4e-10 68.6 53 69.8
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 3.2e-10 68.2 51 62.7
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 4.1e-10 67.8 74 54.1
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 9.2e-10 66.6 53 64.2
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 9.2e-10 66.6 51 64.7
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 9.2e-10 66.6 51 64.7
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 9.2e-10 66.6 58 58.6
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 1.2e-09 66.2 53 62.3
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 1.6e-09 65.9 76 51.3
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 2.7e-09 65.1 51 62.7
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 3.5e-09 64.7 53 64.2
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 3.5e-09 64.7 53 56.6
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 4.6e-09 64.3 76 48.7
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 4.6e-09 64.3 53 62.3
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 1.0e-08 63.2 56 58.9
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 1.0e-08 63.2 53 60.4
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 1.3e-08 62.8 53 54.7
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.7e-08 62.4 76 47.4
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.7e-08 62.4 53 54.7
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 3.0e-08 61.6 53 54.7
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 3.9e-08 61.2 76 47.4
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 5.1e-08 60.8 76 46.1
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 5.1e-08 60.8 53 64.2
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 8.7e-08 60.1 76 44.7
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.1e-07 59.7 53 52.8
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 1.1e-07 59.7 76 44.7
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 1.5e-07 59.3 76 47.4
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 1.9e-07 58.9 76 44.7
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 1.9e-07 58.9 76 46.1
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.9e-07 58.9 89 44.9
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 2.5e-07 58.5 61 50.8
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 2.5e-07 58.5 76 44.7
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 2.5e-07 58.5 53 56.6
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 4.3e-07 57.8 76 47.4
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 4.3e-07 57.8 53 62.3
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 5.6e-07 57.4 76 43.4
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 5.6e-07 57.4 53 50.9
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 7.3e-07 57.0 32 81.2
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 9.6e-07 56.6 76 43.4
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 9.6e-07 56.6 76 43.4
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 9.6e-07 56.6 61 47.5
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 9.6e-07 56.6 76 44.7
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 1.2e-06 56.2 61 45.9
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 1.2e-06 56.2 61 45.9
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 1.6e-06 55.8 76 43.4
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 2.1e-06 55.5 76 40.8
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 2.1e-06 55.5 58 53.4
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 2.1e-06 55.5 76 42.1
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 2.8e-06 55.1 76 40.8
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 2.8e-06 55.1 76 43.4
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 2.8e-06 55.1 58 50.0
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 3.6e-06 54.7 76 42.1
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 3.6e-06 54.7 62 46.8
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 3.6e-06 54.7 61 47.5
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 3.6e-06 54.7 62 46.8
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 4.7e-06 54.3 76 40.8
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 4.7e-06 54.3 53 49.1
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 6.2e-06 53.9 54 50.0
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 6.2e-06 53.9 53 47.2
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 6.2e-06 53.9 52 50.0
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 8.1e-06 53.5 54 50.0


User provided reference genes

Program Settings