Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 0.0e+00 1514.6 812 100.0
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 0.0e+00 1400.6 894 86.0
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 0.0e+00 1176.0 896 75.0
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 0.0e+00 1147.1 898 73.3
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 0.0e+00 1133.2 917 71.8
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 0.0e+00 1122.1 607 98.7
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 0.0e+00 1121.3 899 71.7
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 6.3e-306 1053.9 728 78.0
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 4.4e-259 898.3 906 56.6
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 1.1e-252 877.1 902 56.9
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 1.3e-247 860.1 906 56.6
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 1.7e-247 859.8 923 55.6
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 9.2e-241 837.4 901 55.2
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 1.5e-238 830.1 939 52.5
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 7.3e-238 827.8 769 62.0
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 4.4e-235 818.5 905 53.5
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 4.3e-230 802.0 794 58.2
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 1.3e-229 800.4 913 53.1
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 3.6e-229 798.9 918 53.4
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 3.6e-229 798.9 906 53.8
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 1.8e-228 796.6 891 53.3
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 1.7e-226 790.0 802 56.6
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 4.2e-225 785.4 928 52.0
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 9.3e-225 784.3 908 51.3
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 1.2e-219 767.3 900 52.1
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 9.9e-219 764.2 773 57.6
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 3.8e-218 762.3 916 50.8
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 3.8e-218 762.3 784 57.3
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 3.2e-217 759.2 738 58.1
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 1.2e-216 757.3 796 54.8
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 1.0e-215 754.2 878 52.4
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 1.9e-214 750.0 789 55.5
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 3.4e-211 739.2 773 55.5
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 3.4e-211 739.2 909 50.1
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 1.0e-210 737.6 774 55.3
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 1.7e-210 736.9 879 51.4
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 2.9e-210 736.1 924 50.9
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 1.4e-209 733.8 909 50.8
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 1.4e-209 733.8 777 55.0
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 3.9e-207 725.7 902 49.2
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 8.2e-205 718.0 919 50.3
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 4.1e-204 715.7 906 48.6
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 3.8e-202 709.1 916 47.6
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 2.5e-201 706.4 915 48.3
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 3.2e-201 706.1 779 55.5
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 5.5e-201 705.3 914 48.8
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 7.2e-201 704.9 780 53.6
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 2.7e-200 703.0 602 64.6
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 6.1e-200 701.8 920 49.6
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 3.9e-199 699.1 916 48.7
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 6.7e-199 698.4 919 48.0
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 1.9e-198 696.8 882 48.8
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.3e-197 694.1 787 54.6
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 6.9e-196 688.3 787 53.7
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 6.9e-196 688.3 919 48.6
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 9.0e-196 688.0 905 48.7
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 7.7e-195 684.9 787 53.5
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 1.7e-194 683.7 916 48.4
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 2.9e-194 682.9 775 53.4
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 5.0e-194 682.2 789 52.3
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 2.5e-193 679.9 769 52.5
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 4.2e-193 679.1 903 48.5
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 1.4e-191 674.1 915 47.9
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 3.9e-191 672.5 770 51.8
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 3.9e-191 672.5 909 47.9
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 8.8e-191 671.4 820 49.9
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 1.1e-190 671.0 907 47.1
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 2.6e-190 669.8 897 46.6
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 2.6e-190 669.8 772 51.6
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 5.7e-190 668.7 779 52.5
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 5.7e-190 668.7 910 47.6
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.3e-189 667.5 770 51.6
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 2.2e-189 666.8 912 46.5
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 6.3e-189 665.2 795 51.6
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 6.3e-189 665.2 906 47.5
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 1.4e-188 664.1 926 46.5
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 5.3e-188 662.1 766 52.2
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 1.6e-184 650.6 908 46.6
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 1.0e-183 647.9 911 47.2
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 4.4e-182 642.5 777 51.5
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 3.7e-181 639.4 925 46.3
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 3.5e-179 632.9 884 45.4
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 1.9e-177 627.1 759 49.7
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 3.2e-177 626.3 773 49.8
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 2.1e-176 623.6 902 44.9
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 4.7e-176 622.5 771 51.0
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 2.3e-175 620.2 746 49.3
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 6.7e-175 618.6 874 44.2
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 1.2e-174 617.8 883 45.5
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 1.5e-174 617.5 880 45.3
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 3.7e-173 612.8 879 43.5
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 3.1e-172 609.8 751 48.2
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 1.2e-171 607.8 653 55.6
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 2.0e-171 607.1 909 44.3
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 8.5e-170 601.7 887 44.2
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 1.5e-169 600.9 928 44.0
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 1.0e-167 594.7 902 44.6
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 8.8e-167 591.7 885 42.8
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 1.5e-166 590.9 891 42.2
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 2.0e-166 590.5 904 42.0
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 2.0e-166 590.5 880 43.0
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 1.7e-165 587.4 647 55.6
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 3.7e-165 586.3 766 48.0
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 4.1e-164 582.8 885 42.1
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 1.6e-160 570.9 882 42.2
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 1.3e-154 551.2 857 42.0
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 1.1e-153 548.1 787 45.5
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 4.7e-152 542.7 905 40.2
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 1.1e-148 531.6 881 40.3
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 5.4e-148 529.3 760 46.4
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 7.0e-148 528.9 775 43.4
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 1.0e-146 525.0 737 45.2
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 8.9e-143 511.9 780 44.1
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 2.5e-137 493.8 876 41.0
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 5.8e-134 482.6 869 39.6
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 9.8e-134 481.9 565 52.6
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 2.7e-131 473.8 401 64.8
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 3.3e-129 466.8 876 38.7
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 2.4e-124 450.7 948 37.2
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 2.1e-123 447.6 459 54.7
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 1.4e-100 371.7 741 38.3
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 9.3e-100 369.0 343 60.1
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 2.1e-99 367.9 795 36.1
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 8.7e-98 362.5 903 34.7
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 2.4e-95 354.4 248 72.6
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 3.4e-94 350.5 278 65.1
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 3.8e-93 347.1 346 56.6
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 1.6e-91 341.7 918 31.4
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 2.8e-88 330.9 870 33.4
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 2.3e-82 311.2 790 33.5
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 1.7e-80 305.1 373 50.7
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 4.4e-65 253.8 407 41.3
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 1.7e-64 251.9 418 42.3
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 6.3e-64 250.0 407 41.0
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 4.5e-62 243.8 439 39.2
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 1.5e-60 238.8 416 41.3
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 5.5e-60 236.9 368 41.3
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 2.3e-58 231.5 407 41.3
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 2.3e-58 231.5 329 43.8
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 2.3e-58 231.5 329 43.8
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 1.6e-54 218.8 902 27.2
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 2.0e-49 201.8 369 37.4
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 2.6e-49 201.4 312 43.6
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 3.4e-49 201.1 753 28.0
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 6.3e-48 196.8 665 31.0
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 3.1e-47 194.5 121 81.0
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 2.7e-46 191.4 291 42.6
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 7.7e-46 189.9 421 34.9
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 3.8e-45 187.6 131 72.5
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.1e-44 186.0 315 44.1
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 7.2e-44 183.3 176 61.4
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 2.1e-43 181.8 171 59.1
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 1.7e-37 162.2 192 49.5
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 1.4e-34 152.5 166 53.0
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 8.9e-34 149.8 315 36.8
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 2.0e-33 148.7 314 36.3
CAN.G619.12 Capsicum annuum HOM05D000880 ORTHO05D004760 4.1e-31 141.0 191 48.2
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 2.0e-30 138.7 251 39.4
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.3e-29 136.0 128 58.6
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 5.0e-29 134.0 287 36.6
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 1.1e-28 132.9 110 63.6
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 3.3e-28 131.3 287 36.2
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 1.2e-27 129.4 428 31.5
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 2.9e-24 118.2 82 75.6
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 2.4e-23 115.2 122 59.8
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 4.1e-23 114.4 71 76.1
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 2.5e-20 105.1 583 25.4
CAN.G1015.4 Capsicum annuum HOM05D004625 ORTHO05D006054 2.3e-18 98.6 102 55.9
CAN.G1155.3 Capsicum annuum HOM05D000198 ORTHO05D004760 2.9e-16 91.7 115 48.7
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 6.4e-16 90.5 276 33.3
Rhsim01G0285700 Rhododendron simsii HOM05D000203 ORTHO05D000135 1.4e-15 89.4 315 30.2
Actinidia21043 Actinidia chinensis HOM05D000203 ORTHO05D000135 9.2e-15 86.7 237 28.7
CAN.G443.2 Capsicum annuum HOM05D000880 ORTHO05D004760 2.1e-14 85.5 175 37.7
AT5G36980 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 4.3e-12 77.8 187 35.3
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.8e-10 72.4 126 39.7
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 2.0e-09 68.9 123 44.7
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 3.8e-08 64.7 120 37.5
MBI19_g43566_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D244402 3.2e-07 61.6 90 43.3


User provided reference genes

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