Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004178g0030 Nicotiana tabacum HOM05D004333 ORTHO05D005363 9.4e-59 229.9 113 100.0
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 7.5e-48 193.7 127 78.7
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.4e-46 188.7 127 78.0
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 1.2e-42 176.4 127 70.9
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 1.2e-42 176.4 127 70.9
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 1.1e-38 163.3 127 67.7
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 4.1e-38 161.4 127 66.1
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 3.5e-37 158.3 127 65.4
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 4.4e-16 88.2 121 38.8
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 6.4e-15 84.3 121 36.4
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 6.4e-15 84.3 121 36.4
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 2.4e-14 82.4 126 37.3
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 2.4e-14 82.4 127 38.6
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 5.4e-14 81.3 121 38.0
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 2.7e-13 79.0 129 38.8
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 6.0e-13 77.8 127 37.8
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 1.7e-12 76.3 121 36.4
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 3.0e-12 75.5 129 38.0
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 8.6e-12 73.9 101 42.6
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 1.1e-11 73.6 129 36.4
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 1.9e-11 72.8 127 30.7
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 1.9e-11 72.8 100 40.0
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 3.3e-11 72.0 129 35.7
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 3.3e-11 72.0 95 43.2
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 5.6e-11 71.2 121 36.4
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 9.5e-11 70.5 95 41.1
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 1.2e-10 70.1 95 40.0
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 1.2e-10 70.1 95 41.1
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 1.6e-10 69.7 67 50.7
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 2.1e-10 69.3 128 32.8
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 2.1e-10 69.3 95 41.1
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 2.8e-10 68.9 99 36.4
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 4.7e-10 68.2 128 35.2
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 4.7e-10 68.2 95 41.1
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 6.2e-10 67.8 130 32.3
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 1.1e-09 67.0 95 40.0
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 1.4e-09 66.6 118 36.4
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 1.4e-09 66.6 129 35.7
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 1.4e-09 66.6 130 30.8
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 1.8e-09 66.2 121 32.2
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 1.8e-09 66.2 99 36.4
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 2.3e-09 65.9 127 31.5
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 3.1e-09 65.5 110 32.7
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 3.1e-09 65.5 130 33.1
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 3.1e-09 65.5 130 33.1
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 5.2e-09 64.7 72 44.4
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 6.8e-09 64.3 95 38.9
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 6.8e-09 64.3 127 28.3
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 8.9e-09 63.9 99 33.3
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 8.9e-09 63.9 97 39.2
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 1.2e-08 63.5 54 55.6
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 1.5e-08 63.2 103 35.9
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 1.5e-08 63.2 129 31.0
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 1.5e-08 63.2 130 32.3
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 1.5e-08 63.2 130 32.3
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 1.5e-08 63.2 99 31.3
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 2.0e-08 62.8 61 45.9
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 2.0e-08 62.8 130 32.3
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 2.6e-08 62.4 72 43.1
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 2.6e-08 62.4 72 43.1
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 2.6e-08 62.4 100 36.0
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 3.4e-08 62.0 99 31.3
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 4.4e-08 61.6 105 35.2
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 4.4e-08 61.6 103 35.0
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 4.4e-08 61.6 127 28.3
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 4.4e-08 61.6 122 34.4
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 5.8e-08 61.2 113 33.6
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 5.8e-08 61.2 111 35.1
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 9.9e-08 60.5 105 34.3
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 1.3e-07 60.1 129 33.3
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 1.3e-07 60.1 103 35.0
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 1.7e-07 59.7 122 34.4
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 2.2e-07 59.3 99 32.3
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 2.9e-07 58.9 47 48.9
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 2.9e-07 58.9 47 48.9
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 2.9e-07 58.9 47 48.9
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 2.9e-07 58.9 47 48.9
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 2.9e-07 58.9 47 48.9
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 4.9e-07 58.2 129 31.8
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 4.1e-06 55.1 100 36.0
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 5.4e-06 54.7 109 32.1
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 7.1e-06 54.3 127 30.7
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 7.1e-06 54.3 129 28.7
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 7.1e-06 54.3 99 32.3
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 9.2e-06 53.9 100 33.0


User provided reference genes

Program Settings