Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004090g0150 Nicotiana tabacum HOM05D001082 ORTHO05D005120 4.0e-20 100.5 52 100.0
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 2.1e-13 78.2 42 92.9
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 1.4e-12 75.5 42 88.1
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 1.4e-12 75.5 42 88.1
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 1.8e-12 75.1 42 88.1
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 2.6e-11 71.2 42 81.0
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 3.4e-11 70.9 42 78.6
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 3.4e-11 70.9 42 78.6
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 9.8e-11 69.3 42 76.2
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 1.3e-10 68.9 42 78.6
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 1.7e-10 68.6 42 76.2
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 1.7e-10 68.6 42 76.2
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 1.7e-10 68.6 42 81.0
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 2.8e-10 67.8 42 73.8
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 3.7e-10 67.4 42 73.8
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 3.7e-10 67.4 42 76.2
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 3.7e-10 67.4 38 78.9
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 4.8e-10 67.0 42 73.8
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 6.3e-10 66.6 42 76.2
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 1.1e-09 65.9 42 71.4
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 1.1e-09 65.9 42 71.4
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 1.4e-09 65.5 42 73.8
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 1.8e-09 65.1 42 73.8
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 1.8e-09 65.1 42 73.8
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 1.8e-09 65.1 42 71.4
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 2.4e-09 64.7 38 78.9
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 2.4e-09 64.7 42 71.4
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 2.4e-09 64.7 42 71.4
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 2.4e-09 64.7 42 71.4
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 2.4e-09 64.7 42 73.8
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 3.1e-09 64.3 42 71.4
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 3.1e-09 64.3 42 69.0
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 4.1e-09 63.9 42 66.7
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 4.1e-09 63.9 42 69.0
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 4.1e-09 63.9 42 71.4
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 4.1e-09 63.9 42 71.4
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 5.4e-09 63.5 42 71.4
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 5.4e-09 63.5 42 71.4
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 5.4e-09 63.5 39 71.8
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 5.4e-09 63.5 42 71.4
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 5.4e-09 63.5 42 71.4
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 5.4e-09 63.5 42 69.0
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 7.0e-09 63.2 37 78.4
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 7.0e-09 63.2 37 78.4
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 9.1e-09 62.8 37 78.4
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 9.1e-09 62.8 38 73.7
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 9.1e-09 62.8 42 66.7
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 9.1e-09 62.8 37 78.4
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 1.2e-08 62.4 42 69.0
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 1.2e-08 62.4 42 69.0
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 1.2e-08 62.4 42 71.4
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 1.2e-08 62.4 42 69.0
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 1.6e-08 62.0 37 75.7
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 1.6e-08 62.0 42 69.0
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 1.6e-08 62.0 42 66.7
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 2.0e-08 61.6 37 75.7
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 2.0e-08 61.6 37 75.7
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 2.0e-08 61.6 37 75.7
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 2.0e-08 61.6 37 75.7
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 2.0e-08 61.6 37 75.7
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 2.0e-08 61.6 37 75.7
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 2.0e-08 61.6 42 71.4
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 2.0e-08 61.6 42 71.4
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 2.0e-08 61.6 37 75.7
Os02g0142950 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 2.0e-08 61.6 42 66.7
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 2.0e-08 61.6 42 71.4
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 2.0e-08 61.6 42 66.7
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 2.7e-08 61.2 42 66.7
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 2.7e-08 61.2 42 69.0
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 2.7e-08 61.2 42 66.7
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 2.7e-08 61.2 42 66.7
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 3.5e-08 60.8 42 71.4
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 3.5e-08 60.8 42 66.7
Cpa.g.sc21.215 Carica papaya HOM05D001082 ORTHO05D005120 3.5e-08 60.8 42 66.7
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 3.5e-08 60.8 42 66.7
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 3.5e-08 60.8 42 71.4
ClCG06G008370 Citrullus lanatus HOM05D001082 ORTHO05D005120 4.5e-08 60.5 42 69.0
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 4.5e-08 60.5 42 64.3
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 5.9e-08 60.1 36 72.2
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 5.9e-08 60.1 42 69.0
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 5.9e-08 60.1 42 69.0
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 5.9e-08 60.1 42 64.3
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 7.7e-08 59.7 37 73.0
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 7.7e-08 59.7 38 68.4
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 7.7e-08 59.7 42 66.7
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 1.0e-07 59.3 42 64.3
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.3e-07 58.9 38 73.7
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 2.2e-07 58.2 38 71.1
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 2.9e-07 57.8 38 71.1
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 2.9e-07 57.8 38 71.1
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 5.0e-07 57.0 42 66.7
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 8.5e-07 56.2 36 66.7
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 8.5e-07 56.2 42 64.3
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 8.5e-07 56.2 42 64.3
BolC8t47897H Brassica oleracea HOM05D001082 ORTHO05D005120 1.1e-06 55.8 40 65.0
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 1.1e-06 55.8 42 64.3
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 1.1e-06 55.8 42 64.3
BcaC07g37555 Brassica carinata HOM05D001082 ORTHO05D005120 1.5e-06 55.5 37 67.6
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 3.2e-06 54.3 42 61.9
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 3.2e-06 54.3 42 61.9
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 5.5e-06 53.5 42 61.9
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 7.2e-06 53.1 42 59.5


User provided reference genes

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