Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004057g0040 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 2004.6 1000 100.0
Nitab4.5_0001703g0070 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1841.6 999 92.9
Sopen10g034850 Solanum pennellii HOM05D005896 ORTHO05D007250 0.0e+00 1645.9 958 88.0
CAN.G738.1 Capsicum annuum HOM05D005896 ORTHO05D007250 0.0e+00 1614.4 961 86.1
Solyc10g085400.3 Solanum lycopersicum HOM05D005896 ORTHO05D007250 0.0e+00 1563.5 959 84.7
Dinv35431 Davidia involucrata HOM05D005896 ORTHO05D007250 0.0e+00 1406.0 937 76.6
Actinidia11539 Actinidia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1375.5 934 75.1
Cc06_g00650 Coffea canephora HOM05D005896 ORTHO05D007250 0.0e+00 1362.1 933 74.2
GSVIVG01030240001 Vitis vinifera HOM05D005896 ORTHO05D007250 0.0e+00 1350.5 920 74.5
QL07p033519 Quercus lobata HOM05D005896 ORTHO05D007250 0.0e+00 1343.9 935 73.2
CSS0019926 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1342.4 936 74.0
Manes.09G113900 Manihot esculenta HOM05D005896 ORTHO05D007250 0.0e+00 1335.5 890 76.1
Sabra06G0082600 Salix brachista HOM05D005896 ORTHO05D007250 0.0e+00 1335.5 942 72.9
Migut.J00081 Erythranthe guttata HOM05D005896 ORTHO05D007250 0.0e+00 1334.7 968 71.7
Potri.006G106000 Populus trichocarpa HOM05D005896 ORTHO05D007250 0.0e+00 1333.5 924 72.8
CSS0029745 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1332.0 936 73.6
TWI77G0262 Tripterygium wilfordii HOM05D005896 ORTHO05D007250 0.0e+00 1329.7 905 74.8
Atru.chr8.2358 Acer truncatum HOM05D005896 ORTHO05D007250 0.0e+00 1328.5 891 74.3
MSTRG.5530 Avicennia marina HOM05D005896 ORTHO05D007250 0.0e+00 1325.1 939 71.4
Thecc.05G004100 Theobroma cacao HOM05D005896 ORTHO05D007250 0.0e+00 1322.4 919 72.8
RcHm_v2.0_Chr3g0461101 Rosa chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1321.6 905 72.8
CANSAT35G1655 Cannabis sativa HOM05D005896 ORTHO05D007250 0.0e+00 1316.2 928 72.3
FvH4_6g10330 Fragaria vesca HOM05D005896 ORTHO05D007250 0.0e+00 1315.4 882 73.7
Prupe.6G287100 Prunus persica HOM05D005896 ORTHO05D007250 0.0e+00 1308.9 882 74.3
ECA236G3210 Erigeron canadensis HOM05D005896 ORTHO05D007250 0.0e+00 1307.0 913 72.2
FAN05G0609 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1307.0 892 73.3
Aqoxy2G00762 Aquilegia oxysepala HOM05D005896 ORTHO05D007250 0.0e+00 1305.8 960 70.8
FAN14G5183 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1301.2 892 72.6
HanXRQChr12g0363731 Helianthus annuus HOM05D005896 ORTHO05D007250 0.0e+00 1301.2 927 71.8
Gorai.012G119800 Gossypium raimondii HOM05D005896 ORTHO05D007250 0.0e+00 1300.8 952 70.1
vmacro20337 Vaccinium macrocarpon HOM05D005896 ORTHO05D007250 0.0e+00 1300.4 996 67.8
Gohir.D04G136000 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1300.0 952 69.9
MELO3C009120.2 Cucumis melo HOM05D005896 ORTHO05D007250 0.0e+00 1298.1 901 73.0
FAN05G5239 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1297.3 918 71.2
FAN02G1083 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1296.6 907 71.6
Nn2g11051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 0.0e+00 1296.6 892 74.6
Haze_21109 Corylus avellana HOM05D005896 ORTHO05D007250 0.0e+00 1294.3 912 72.5
Lj2A64G51 Lonicera japonica HOM05D005896 ORTHO05D007250 0.0e+00 1292.3 985 69.0
Phvul.008G089700 Phaseolus vulgaris HOM05D005896 ORTHO05D007250 0.0e+00 1291.2 855 75.0
Medtr7g071990 Medicago truncatula HOM05D005896 ORTHO05D007250 0.0e+00 1290.4 947 69.1
VMungo1383G2905 Vigna mungo HOM05D005896 ORTHO05D007250 0.0e+00 1289.2 909 71.9
PSO339G6300 Papaver somniferum HOM05D005896 ORTHO05D007250 0.0e+00 1287.7 901 72.4
Glyma.18G209600 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1286.6 898 72.3
Glyma.09G279500 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1285.8 930 70.3
MD04G1168900 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1285.4 901 71.5
Sed0010587 Sechium edule HOM05D005896 ORTHO05D007250 0.0e+00 1284.2 906 72.1
Gohir.A04G096200 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1283.9 955 69.0
Lj1g0024727 Lotus japonicus HOM05D005896 ORTHO05D007250 0.0e+00 1283.9 912 71.7
MD12G1182400 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1282.3 893 71.1
Ca_26097_v3 Cicer arietinum L. HOM05D005896 ORTHO05D007250 0.0e+00 1281.9 903 71.8
CsaV3_3G033280 Cucumis sativus L. HOM05D005896 ORTHO05D007250 0.0e+00 1279.6 876 73.9
Lsat_1_v5_gn_8_105740 Lactuca sativa HOM05D005896 ORTHO05D007250 0.0e+00 1278.5 885 72.5
arahy.Tifrunner.gnm1.ann1.2FTV5P Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1277.3 889 72.8
Psat3g120600 Pisum sativum HOM05D005896 ORTHO05D007250 0.0e+00 1277.3 930 70.1
arahy.Tifrunner.gnm1.ann1.Q3Q3XE Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1275.4 905 71.4
Eucgr.A00643 Eucalyptus grandis HOM05D005896 ORTHO05D007250 0.0e+00 1271.1 903 71.7
SalBow5G4224 Salvia bowleyana HOM05D005896 ORTHO05D007250 0.0e+00 1270.4 968 68.8
Lalb_Chr01g0023511 Lupinus albus HOM05D005896 ORTHO05D007250 0.0e+00 1265.0 919 69.3
Rhsim05G0227300 Rhododendron simsii HOM05D005896 ORTHO05D007250 0.0e+00 1262.7 884 72.3
TAR623G1464 Trochodendron aralioides HOM05D005896 ORTHO05D007250 0.0e+00 1261.9 912 72.1
ClCG10G022550 Citrullus lanatus HOM05D005896 ORTHO05D007250 0.0e+00 1252.7 974 67.1
Sc02g0000680 Simmondsia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1240.3 933 69.3
Ciclev10011082m.g Citrus clementina HOM05D005896 ORTHO05D007250 0.0e+00 1229.9 801 75.9
ATR0681G081 Amborella trichopoda HOM05D005896 ORTHO05D007250 0.0e+00 1224.5 922 68.4
THA.LOC104823308 Tarenaya hassleriana HOM05D005896 ORTHO05D007250 0.0e+00 1206.4 928 66.3
CAN.G1288.7 Capsicum annuum HOM05D005896 ORTHO05D007250 0.0e+00 1202.6 833 76.1
TPR.G18656 Trifolium pratense HOM05D005896 ORTHO05D007250 0.0e+00 1199.1 838 71.4
BcaB04g18571 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1192.2 896 66.7
Cfa017090 Carpinus fangiana HOM05D005896 ORTHO05D007250 0.0e+00 1181.4 926 67.2
Thhalv10020004m.g Eutrema salsugineum HOM05D005896 ORTHO05D007250 0.0e+00 1177.9 904 66.2
AL3G19830 Arabidopsis lyrata HOM05D005896 ORTHO05D007250 0.0e+00 1177.2 905 66.0
AT3G08840 Arabidopsis thaliana HOM05D005896 ORTHO05D007250 0.0e+00 1175.2 851 69.1
BraA03t12806Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1175.2 933 64.8
CiPaw.09G216900 Carya illinoinensis HOM05D005896 ORTHO05D007250 0.0e+00 1173.7 788 75.4
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1172.1 908 66.0
AUR62006318 Chenopodium quinoa HOM05D005896 ORTHO05D007250 0.0e+00 1168.3 901 67.1
DCAR_028898 Daucus carota HOM05D005896 ORTHO05D007250 0.0e+00 1166.0 950 65.2
BcaC01g04196 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1165.6 896 66.1
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1165.2 905 66.0
BolC3t16668H Brassica oleracea HOM05D005896 ORTHO05D007250 0.0e+00 1158.7 896 66.0
FAN09G0048 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1157.5 883 67.6
Os07g0691200 Oryza sativa ssp. japonica HOM05D005896 ORTHO05D007250 0.0e+00 1155.2 881 65.6
Carub.0003s0795 Capsella rubella HOM05D005896 ORTHO05D007250 0.0e+00 1153.7 893 65.3
HPP92_013852 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1151.3 875 67.0
BcaB04g20289 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1135.2 866 65.6
SEGI_19702 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 0.0e+00 1134.8 946 62.8
Zm00001eb111890 Zea mays HOM05D005896 ORTHO05D007250 0.0e+00 1134.8 870 65.2
BcaC09g49362 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1124.4 878 64.5
A01p29640 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1118.2 860 65.5
COL.COLO4_14429 Corchorus olitorius HOM05D005896 ORTHO05D007250 0.0e+00 1109.7 897 65.3
BraA01t03093Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1104.0 875 64.7
C01p37440 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1103.2 883 64.0
Aa31LG5G18810 Aethionema arabicum HOM05D005896 ORTHO05D007250 0.0e+00 1090.1 841 65.3
FAN14G5591 Fragaria x ananassa HOM05D005896 ORTHO05D007250 1.8e-310 1069.3 840 66.4
Peaxi162Scf00009g01011 Petunia axillaris HOM05D005896 ORTHO05D007250 7.0e-307 1057.4 598 88.0
HPP92_013866 Vanilla planifolia HOM05D005896 ORTHO05D007250 3.7e-300 1035.0 875 61.4
A03p36380 Brassica napus HOM05D005896 ORTHO05D007250 1.2e-274 950.3 766 63.7
SMO228G0083 Selaginella moellendorffii HOM05D005896 ORTHO05D007250 2.1e-271 939.5 879 54.3
Hma1.2p1_2300F.1_g319233 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 1.9e-264 916.4 623 74.8
Mapoly0266s0003 Marchantia polymorpha HOM05D005896 ORTHO05D007250 8.1e-263 911.0 937 51.5
Hma1.2p1_2300F.1_g319236 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 6.4e-260 901.4 611 75.5
Actinidia26603 Actinidia chinensis HOM05D005896 ORTHO05D007250 1.3e-247 860.5 621 71.5
HanXRQChr16g0509701 Helianthus annuus HOM05D005896 ORTHO05D007250 1.6e-239 833.6 683 65.2
PRCOL_00001217 Prasinoderma coloniale HOM05D005896 ORTHO05D007250 7.2e-211 738.4 887 48.0
PGSC0003DMG400011105 Solanum tuberosum HOM05D005896 ORTHO05D007250 1.6e-210 737.3 417 88.5
AUR62026359 Chenopodium quinoa HOM05D005896 ORTHO05D007250 3.8e-204 716.1 910 47.8
MBI15_g29358_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 3.7e-199 699.5 539 68.3
CARHR083150 Cardamine hirsuta HOM05D005896 ORTHO05D007250 5.9e-197 692.2 534 65.5
AagrBONN_evm.TU.Sc2ySwM_362.2825 Anthoceros agrestis HOM05D005896 ORTHO05D007250 1.1e-195 688.0 661 54.5
Pp3c18_18940 Physcomitrium patens HOM05D005896 ORTHO05D007250 2.2e-191 673.7 737 48.8
Oeu023744.1 Olea europaea HOM05D005896 ORTHO05D007250 3.1e-182 643.3 422 73.7
BolC1t03711H Brassica oleracea HOM05D005896 ORTHO05D007250 8.3e-175 618.6 508 62.6
Cpa.g.c34215 Carica papaya HOM05D005896 ORTHO05D007250 4.7e-162 576.2 396 71.7
Oeu033807.1 Olea europaea HOM05D005896 ORTHO05D007250 2.1e-141 507.7 393 69.0
Peaxi162Scf00009g01010 Petunia axillaris HOM05D005896 ORTHO05D007250 2.0e-136 491.1 329 79.3
Hma1.2p1_2300F.1_g319240 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 5.9e-104 383.3 244 77.0
BolC1t03712H Brassica oleracea HOM05D005896 ORTHO05D007250 8.5e-103 379.4 280 67.9
Nn2g16051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 1.5e-86 325.5 216 77.3
Hund03771 Selenicereus undatus HOM05D005896 ORTHO05D007250 3.8e-79 300.8 239 64.0
Hma1.2p1_3169F.1_g333550 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 9.4e-78 296.2 314 54.5
SEGI_37805 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 6.8e-60 236.9 152 75.7
CBR_g45569 Chara braunii HOM05D005896 ORTHO05D007250 2.0e-56 225.3 235 48.5
CBR_g38233 Chara braunii HOM05D005896 ORTHO05D007250 4.7e-53 214.2 225 52.4
MBI15_g29355_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 4.0e-44 184.5 288 46.2
MBI15_g25466_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 3.3e-38 164.9 234 50.0
Solyc09g031528.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 3.1e-28 131.7 96 71.9
CBR_g38232 Chara braunii HOM05D000019 ORTHO05D000048 3.5e-24 118.2 274 33.6
Solyc09g015130.4 Solanum lycopersicum HOM05D005896 ORTHO05D007250 1.9e-22 112.5 60 93.3
TPR.G7700 Trifolium pratense HOM05D005896 ORTHO05D007250 8.1e-21 107.1 92 62.0
CiPaw.01G264800 Carya illinoinensis HOM05D001401 ORTHO05D002222 3.1e-20 105.1 82 64.6
Cre15.g635650 Chlamydomonas reinhardtii HOM05D005896 ORTHO05D007250 1.1e-17 96.7 393 22.4
Glyma.16G116800 Glycine max HOM05D005896 ORTHO05D007250 7.4e-14 84.0 69 63.8
Solyc07g032788.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 2.9e-10 72.0 37 91.9
COL.COLO4_03233 Corchorus olitorius HOM05D005896 ORTHO05D007250 6.0e-08 64.3 109 38.5
QL06p031927 Quercus lobata HOM05D005896 ORTHO05D007250 1.0e-07 63.5 52 63.5


User provided reference genes

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