Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 0.0e+00 1362.4 684 100.0
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 2.5e-292 1008.4 817 66.8
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 2.6e-289 998.4 817 66.1
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 2.2e-288 995.3 837 66.3
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 1.4e-285 986.1 818 65.5
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 7.0e-282 973.8 699 75.5
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 4.6e-225 785.0 826 53.4
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 7.3e-223 777.7 869 51.9
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 2.2e-219 766.1 819 52.4
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 4.9e-219 765.0 816 52.2
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 2.1e-217 759.6 819 52.0
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 2.2e-203 713.0 804 51.4
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 2.0e-196 689.9 714 53.6
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 1.3e-195 687.2 832 48.6
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 1.7e-195 686.8 817 49.6
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 4.3e-183 645.6 839 46.1
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 6.1e-177 625.2 816 46.2
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 2.8e-174 616.3 770 46.4
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 1.7e-171 607.1 805 44.0
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 2.2e-171 606.7 779 46.0
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 1.6e-169 600.5 806 44.2
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 1.7e-166 590.5 796 44.7
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 2.2e-163 580.1 733 47.7
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 1.6e-161 573.9 814 42.1
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 1.4e-160 570.9 784 44.1
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 2.7e-156 556.6 852 41.9
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 1.1e-149 534.6 836 40.9
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 3.0e-144 516.5 758 42.6
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 4.9e-142 509.2 799 39.5
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 8.3e-142 508.4 816 40.3
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 8.3e-142 508.4 799 40.1
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.6e-140 504.2 800 39.0
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 1.6e-140 504.2 800 39.0
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 6.6e-139 498.8 766 41.5
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 4.3e-138 496.1 770 39.6
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 7.3e-138 495.4 771 39.0
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 7.3e-138 495.4 849 37.5
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 1.8e-136 490.7 827 37.1
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 1.8e-133 480.7 804 39.2
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 3.2e-133 479.9 835 37.7
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 5.4e-133 479.2 754 42.2
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 1.6e-132 477.6 796 39.3
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 2.3e-131 473.8 809 37.5
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 3.9e-131 473.0 817 38.7
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 1.5e-130 471.1 705 41.0
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 1.9e-130 470.7 811 36.9
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 1.9e-130 470.7 813 41.0
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 5.6e-130 469.2 790 38.7
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 2.8e-129 466.8 846 36.9
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 3.1e-128 463.4 724 40.7
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.5e-127 461.1 782 37.6
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 4.4e-127 459.5 771 37.9
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 1.7e-126 457.6 777 38.5
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 1.6e-124 451.1 776 38.8
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 2.3e-123 447.2 791 37.9
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 1.2e-121 441.4 810 35.8
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 6.2e-121 439.1 771 36.8
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 8.1e-121 438.7 811 36.5
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 4.0e-120 436.4 817 35.9
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 1.2e-119 434.9 724 41.4
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.2e-119 434.9 794 37.0
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 7.5e-119 432.2 778 36.4
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 7.5e-119 432.2 774 35.9
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 3.7e-118 429.9 976 31.9
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 4.1e-117 426.4 900 33.2
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 9.2e-117 425.2 792 35.7
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 9.2e-117 425.2 803 35.4
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 1.3e-115 421.4 795 36.6
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 6.6e-115 419.1 779 36.3
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 1.9e-114 417.5 955 31.5
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 3.1e-112 410.2 810 34.2
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 6.8e-112 409.1 809 35.6
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 1.3e-110 404.8 808 33.4
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 1.7e-110 404.4 809 33.5
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 4.1e-109 399.8 921 32.0
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 3.5e-108 396.7 768 35.7
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 3.0e-107 393.7 764 35.5
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 3.0e-107 393.7 918 32.4
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 8.6e-107 392.1 1010 30.2
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 3.6e-105 386.7 847 32.0
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 3.1e-104 383.6 807 32.8
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 2.0e-103 380.9 823 34.9
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 9.9e-103 378.6 822 34.9
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 8.4e-102 375.6 734 35.4
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 1.1e-101 375.2 778 33.8
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 1.9e-101 374.4 610 42.8
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 5.4e-101 372.9 818 32.5
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 2.1e-100 370.9 820 33.0
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 3.5e-100 370.2 737 35.4
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 5.6e-98 362.8 909 31.2
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 1.6e-97 361.3 796 32.8
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 1.9e-93 347.8 679 36.2
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 1.0e-91 342.0 780 32.2
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 4.0e-88 330.1 959 29.2
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 4.0e-88 330.1 424 45.3
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.2e-87 328.6 754 33.2
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.5e-87 328.2 423 44.7
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.6e-84 318.2 541 36.8
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.6e-76 291.6 411 44.3
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 1.6e-73 281.6 411 40.9
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 3.8e-70 270.4 550 35.1
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 3.8e-70 270.4 484 37.6
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 5.0e-70 270.0 643 29.9
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 4.6e-68 263.5 615 33.3
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 1.0e-67 262.3 439 39.6
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 3.9e-67 260.4 427 38.4
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 3.3e-66 257.3 527 34.9
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 3.3e-66 257.3 707 30.1
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 5.7e-66 256.5 714 29.8
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 5.7e-66 256.5 551 33.6
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 2.2e-65 254.6 295 50.2
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 4.8e-65 253.4 510 35.5
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 6.3e-65 253.1 438 37.9
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 3.1e-64 250.8 620 32.4
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 1.2e-63 248.8 436 38.1
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 1.2e-63 248.8 436 38.1
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 4.5e-63 246.9 441 38.5
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 1.3e-62 245.4 422 38.6
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 6.5e-62 243.0 446 37.4
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 8.5e-62 242.7 684 29.4
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 1.1e-61 242.3 837 27.7
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 1.4e-61 241.9 500 34.4
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.4e-61 241.9 527 33.8
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 1.9e-61 241.5 413 36.1
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 4.2e-61 240.4 438 36.3
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 2.1e-60 238.0 412 35.7
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 3.6e-60 237.3 389 36.5
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 2.6e-58 231.1 478 32.8
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 7.4e-58 229.6 404 35.9
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 1.3e-57 228.8 413 35.6
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 4.8e-57 226.9 427 37.7
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 8.2e-57 226.1 676 30.6
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 5.3e-56 223.4 390 34.6
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 2.6e-55 221.1 524 30.9
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 2.2e-54 218.0 412 35.9
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 2.3e-51 208.0 477 32.1
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 4.4e-50 203.8 391 36.3
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 6.3e-49 199.9 138 79.0
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.8e-48 198.4 254 42.9
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 3.5e-47 194.1 392 37.0
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 7.2e-45 186.4 823 25.0
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 2.8e-41 174.5 526 28.5
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 4.1e-40 170.6 265 41.1
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 7.7e-39 166.4 191 49.7
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 1.5e-37 162.2 719 25.6
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 3.6e-36 157.5 317 30.3
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.4e-32 145.6 769 23.3
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 1.8e-32 145.2 453 27.4
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 1.0e-30 139.4 387 32.8
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 3.0e-27 127.9 184 43.5
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 6.6e-22 110.2 88 55.7
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 4.3e-21 107.5 88 55.7
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.8e-19 102.1 101 51.5
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 1.5e-18 99.0 666 22.8
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 2.0e-18 98.6 150 33.3
Oeu005515.1 Olea europaea HOM05D004295 ORTHO05D004901 6.2e-12 77.0 103 46.6
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 2.3e-11 75.1 83 47.0
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 4.1e-08 64.3 96 32.3
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 9.2e-08 63.2 51 45.1
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 2.0e-07 62.0 50 60.0


User provided reference genes

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