Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003962g0030 Nicotiana tabacum HOM05D005694 ORTHO05D007402 6.0e-236 820.5 420 100.0
Nitab4.5_0002657g0010 Nicotiana tabacum HOM05D005694 ORTHO05D007402 1.4e-219 766.1 422 93.4
Sopen03g008170 Solanum pennellii HOM05D005694 ORTHO05D007402 4.0e-195 684.9 420 81.2
Solyc03g044190.3 Solanum lycopersicum HOM05D005694 ORTHO05D007402 6.8e-195 684.1 420 81.4
PGSC0003DMG400014873 Solanum tuberosum HOM05D005694 ORTHO05D007402 3.1e-184 648.7 378 87.3
Peaxi162Scf00365g00618 Petunia axillaris HOM05D005694 ORTHO05D007402 1.7e-177 626.3 383 83.6
Prupe.6G229100 Prunus persica HOM05D005694 ORTHO05D007402 7.5e-162 574.3 413 68.8
MSTRG.2849 Avicennia marina HOM05D005694 ORTHO05D007402 1.3e-161 573.5 409 69.7
Oeu037163.1 Olea europaea HOM05D005694 ORTHO05D007402 9.2e-160 567.4 375 74.4
RcHm_v2.0_Chr2g0106661 Rosa chinensis HOM05D005694 ORTHO05D007402 3.3e-157 558.9 392 70.4
FvH4_1g16760 Fragaria vesca HOM05D005694 ORTHO05D007402 9.5e-157 557.4 415 68.0
Migut.H00394 Erythranthe guttata HOM05D005694 ORTHO05D007402 4.7e-156 555.1 393 70.5
SGA_v2.0_scaffold143G35788 Striga asiatica HOM05D005694 ORTHO05D007402 2.4e-155 552.7 373 72.7
FAN19G0282 Fragaria x ananassa HOM05D005694 ORTHO05D007402 3.4e-154 548.9 415 67.5
Thecc.01G063300 Theobroma cacao HOM05D005694 ORTHO05D007402 4.4e-154 548.5 367 73.0
FAN23G2399 Fragaria x ananassa HOM05D005694 ORTHO05D007402 7.6e-154 547.7 415 66.0
FAN26G1197 Fragaria x ananassa HOM05D005694 ORTHO05D007402 7.6e-154 547.7 415 67.2
EL10Ac6g15690 Beta vulgaris HOM05D005694 ORTHO05D007402 1.3e-153 547.0 420 67.1
MELO3C007585.2 Cucumis melo HOM05D005694 ORTHO05D007402 3.8e-153 545.4 400 66.5
CANSAT25G2140 Cannabis sativa HOM05D005694 ORTHO05D007402 4.9e-153 545.0 414 66.7
CANSAT25G0291 Cannabis sativa HOM05D005694 ORTHO05D007402 8.4e-153 544.3 415 66.5
CsaV3_6G043550 Cucumis sativus L. HOM05D005694 ORTHO05D007402 1.9e-152 543.1 399 66.4
Potri.005G060500 Populus trichocarpa HOM05D005694 ORTHO05D007402 1.9e-152 543.1 370 70.8
Cpa.g.sc6.99 Carica papaya HOM05D005694 ORTHO05D007402 2.4e-152 542.7 403 68.0
COL.COLO4_11482 Corchorus olitorius HOM05D005694 ORTHO05D007402 3.2e-152 542.3 370 71.4
Manes.12G108400 Manihot esculenta HOM05D005694 ORTHO05D007402 7.1e-152 541.2 387 69.5
Sabra05G0051000 Salix brachista HOM05D005694 ORTHO05D007402 7.1e-152 541.2 408 66.4
ClCG01G017080 Citrullus lanatus HOM05D005694 ORTHO05D007402 1.2e-151 540.4 400 67.0
Duzib264G0643 Durio zibethinus HOM05D005694 ORTHO05D007402 1.6e-151 540.0 370 70.8
Hund16366 Selenicereus undatus HOM05D005694 ORTHO05D007402 1.6e-151 540.0 370 71.4
AUR62003938 Chenopodium quinoa HOM05D005694 ORTHO05D007402 2.1e-151 539.7 381 69.0
AL8G44040 Arabidopsis lyrata HOM05D005694 ORTHO05D007402 6.0e-151 538.1 367 71.4
Gorai.007G218000 Gossypium raimondii HOM05D005694 ORTHO05D007402 6.0e-151 538.1 386 69.2
Lsat_1_v5_gn_3_88661 Lactuca sativa HOM05D005694 ORTHO05D007402 3.0e-150 535.8 385 68.3
BraA05t22832Z Brassica rapa HOM05D005694 ORTHO05D007402 3.9e-150 535.4 402 66.2
Haze_15351 Corylus avellana HOM05D005694 ORTHO05D007402 3.9e-150 535.4 389 68.9
Gohir.D11G203300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 5.1e-150 535.0 370 70.8
Ciclev10025664m.g Citrus clementina HOM05D005694 ORTHO05D007402 6.6e-150 534.6 400 68.0
AUR62038254 Chenopodium quinoa HOM05D005694 ORTHO05D007402 8.6e-150 534.3 411 65.0
Sed0004561 Sechium edule HOM05D005694 ORTHO05D007402 1.9e-149 533.1 424 66.7
arahy.Tifrunner.gnm1.ann1.ZT89Y7 Arachis hypogaea HOM05D005694 ORTHO05D007402 3.3e-149 532.3 395 65.8
QL06p040237 Quercus lobata HOM05D005694 ORTHO05D007402 4.3e-149 531.9 408 64.7
Thhalv10004317m.g Eutrema salsugineum HOM05D005694 ORTHO05D007402 5.6e-149 531.6 414 64.7
PGR004G1079 Punica granatum HOM05D005694 ORTHO05D007402 7.3e-149 531.2 393 67.4
BcaC05g29844 Brassica carinata HOM05D005694 ORTHO05D007402 1.2e-148 530.4 406 65.3
BolC5t34672H Brassica oleracea HOM05D005694 ORTHO05D007402 1.2e-148 530.4 406 65.3
Cfa004061 Carpinus fangiana HOM05D005694 ORTHO05D007402 2.8e-148 529.3 389 67.9
Glyma.17G167200 Glycine max HOM05D005694 ORTHO05D007402 6.2e-148 528.1 383 68.1
Lj4g0009127 Lotus japonicus HOM05D005694 ORTHO05D007402 6.2e-148 528.1 406 65.0
Rhsim10G0112600 Rhododendron simsii HOM05D005694 ORTHO05D007402 8.1e-148 527.7 414 64.5
BcaB06g28844 Brassica carinata HOM05D005694 ORTHO05D007402 1.4e-147 526.9 408 64.7
Actinidia12019 Actinidia chinensis HOM05D005694 ORTHO05D007402 4.0e-147 525.4 416 65.1
A05p41050 Brassica napus HOM05D005694 ORTHO05D007402 4.0e-147 525.4 368 69.0
MD02G1178800 Malus domestica HOM05D005694 ORTHO05D007402 4.0e-147 525.4 361 71.2
CSS0006569 Camellia sinensis var. sinensis HOM05D005694 ORTHO05D007402 5.2e-147 525.0 361 72.3
Carub.0008s2721 Capsella rubella HOM05D005694 ORTHO05D007402 9.0e-147 524.2 368 68.8
HanXRQChr12g0377261 Helianthus annuus HOM05D005694 ORTHO05D007402 1.2e-146 523.9 383 67.6
Atru.chr3.251 Acer truncatum HOM05D005694 ORTHO05D007402 1.5e-146 523.5 374 68.2
CARHR280330 Cardamine hirsuta HOM05D005694 ORTHO05D007402 2.6e-146 522.7 395 66.6
Lalb_Chr16g0388811 Lupinus albus HOM05D005694 ORTHO05D007402 2.6e-146 522.7 370 68.4
Aqoxy6G02871 Aquilegia oxysepala HOM05D005694 ORTHO05D007402 7.6e-146 521.2 402 67.4
ECA246G1807 Erigeron canadensis HOM05D005694 ORTHO05D007402 7.6e-146 521.2 388 66.5
C05p60220 Brassica napus HOM05D005694 ORTHO05D007402 9.9e-146 520.8 431 61.9
VMungo0251G0564 Vigna mungo HOM05D005694 ORTHO05D007402 9.9e-146 520.8 413 62.5
AT5G67290 Arabidopsis thaliana HOM05D005694 ORTHO05D007402 1.3e-145 520.4 414 64.3
CiPaw.01G012900 Carya illinoinensis HOM05D005694 ORTHO05D007402 1.7e-145 520.0 398 65.8
Sp2g29370 Schrenkiella parvula HOM05D005694 ORTHO05D007402 1.7e-145 520.0 368 69.3
Ca_22124_v3 Cicer arietinum L. HOM05D005694 ORTHO05D007402 9.3e-144 514.2 374 69.8
Aa31LG1G15820 Aethionema arabicum HOM05D005694 ORTHO05D007402 2.7e-143 512.7 368 68.2
TAR625G0317 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.7e-142 510.0 376 68.1
Nn1g04704 Nelumbo nucifera HOM05D005694 ORTHO05D007402 3.0e-142 509.2 359 70.5
Sc16g0005230 Simmondsia chinensis HOM05D005694 ORTHO05D007402 3.0e-142 509.2 380 65.3
THA.LOC104819246 Tarenaya hassleriana HOM05D005694 ORTHO05D007402 6.6e-142 508.1 369 68.6
Medtr4g094962 Medicago truncatula HOM05D005694 ORTHO05D007402 1.9e-141 506.5 403 62.3
Gohir.A11G220300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 2.5e-141 506.1 370 68.1
Psat4g084360 Pisum sativum HOM05D005694 ORTHO05D007402 2.5e-141 506.1 385 65.5
Duzib147G1433 Durio zibethinus HOM05D005694 ORTHO05D007402 4.3e-141 505.4 378 68.5
TAR381G0027 Trochodendron aralioides HOM05D005694 ORTHO05D007402 4.3e-141 505.4 367 69.8
TAR381G0285 Trochodendron aralioides HOM05D005694 ORTHO05D007402 4.3e-141 505.4 367 69.8
arahy.Tifrunner.gnm1.ann1.MA1EVV Arachis hypogaea HOM05D005694 ORTHO05D007402 2.1e-140 503.1 462 56.1
Phvul.003G240300 Phaseolus vulgaris HOM05D005694 ORTHO05D007402 2.8e-140 502.7 369 66.4
TPR.G23863 Trifolium pratense HOM05D005694 ORTHO05D007402 1.1e-139 500.7 387 66.7
PSO541G0377 Papaver somniferum HOM05D005694 ORTHO05D007402 1.4e-139 500.4 369 66.1
unitig_46.g18707 Utricularia gibba HOM05D005694 ORTHO05D007402 1.8e-139 500.0 371 65.2
Eucgr.I00761 Eucalyptus grandis HOM05D005694 ORTHO05D007402 4.0e-139 498.8 372 67.7
Eucgr.I00787 Eucalyptus grandis HOM05D005694 ORTHO05D007402 5.3e-139 498.4 372 67.7
TAR625G0863 Trochodendron aralioides HOM05D005694 ORTHO05D007402 2.6e-138 496.1 365 68.5
DCAR_025759 Daucus carota HOM05D005694 ORTHO05D007402 7.6e-138 494.6 419 62.8
PSO675G2151 Papaver somniferum HOM05D005694 ORTHO05D007402 1.3e-137 493.8 407 61.9
Cc11_g04760 Coffea canephora HOM05D005694 ORTHO05D007402 4.9e-137 491.9 373 66.8
Lj4g0018653 Lotus japonicus HOM05D005694 ORTHO05D007402 1.9e-136 490.0 413 61.3
Glyma.05G097800 Glycine max HOM05D005694 ORTHO05D007402 4.2e-136 488.8 375 65.3
Dinv26866 Davidia involucrata HOM05D005694 ORTHO05D007402 4.6e-135 485.3 368 67.7
Sc16g0005220 Simmondsia chinensis HOM05D005694 ORTHO05D007402 6.4e-129 464.9 380 61.1
vmacro05254 Vaccinium macrocarpon HOM05D005694 ORTHO05D007402 9.6e-125 451.1 437 57.9
CDE06G0326 Ceratophyllum demersum HOM05D005694 ORTHO05D007402 1.3e-124 450.7 363 62.3
ATR1098G030 Amborella trichopoda HOM05D005694 ORTHO05D007402 1.4e-123 447.2 367 61.3
HPP92_017733 Vanilla planifolia HOM05D005694 ORTHO05D007402 4.6e-119 432.2 366 59.8
Dinv30033 Davidia involucrata HOM05D005694 ORTHO05D007402 6.0e-119 431.8 358 63.4
Os07g0155100 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 3.7e-116 422.5 383 58.2
Mapoly0178s0017 Marchantia polymorpha HOM05D005694 ORTHO05D007402 2.4e-115 419.9 377 57.0
SEGI_26559 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 5.0e-113 412.1 387 54.5
HanXRQChr02g0044351 Helianthus annuus HOM05D005694 ORTHO05D007402 3.2e-112 409.5 370 58.4
CAN.G572.58 Capsicum annuum HOM05D005694 ORTHO05D007402 5.5e-112 408.7 264 78.0
Pp3c14_12180 Physcomitrium patens HOM05D005694 ORTHO05D007402 1.8e-110 403.7 377 56.5
Zm00001eb300250 Zea mays HOM05D005694 ORTHO05D007402 2.3e-110 403.3 382 55.5
AagrBONN_evm.TU.Sc2ySwM_117.3787 Anthoceros agrestis HOM05D005694 ORTHO05D007402 3.7e-108 396.0 384 53.4
ECA238G4251 Erigeron canadensis HOM05D005694 ORTHO05D007402 2.9e-105 386.3 383 55.1
SMO351G0208 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 5.7e-101 372.1 368 52.2
SMO367G0384 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 3.4e-98 362.8 379 51.2
HPP92_017700 Vanilla planifolia HOM05D005694 ORTHO05D007402 3.8e-97 359.4 320 57.8
Lj7C77T1 Lonicera japonica HOM05D005694 ORTHO05D007402 7.4e-93 345.1 296 60.1
Mapoly0178s0018 Marchantia polymorpha HOM05D005694 ORTHO05D007402 2.9e-89 333.2 314 56.1
SEGI_01647 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 3.8e-89 332.8 388 46.9
Aa31LG1G15830 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.8e-83 313.9 226 65.5
Cre16.g671450 Chlamydomonas reinhardtii HOM05D005694 ORTHO05D007402 7.0e-75 285.4 389 42.9
FAN28G1711 Fragaria x ananassa HOM05D005694 ORTHO05D007402 2.5e-72 276.9 178 73.6
FAN28G1889 Fragaria x ananassa HOM05D005694 ORTHO05D007402 2.5e-72 276.9 178 73.6
MCO03G407 Micromonas commoda HOM05D005694 ORTHO05D007402 9.8e-61 238.4 386 40.7
Actinidia36463 Actinidia chinensis HOM05D005694 ORTHO05D007402 3.1e-54 216.9 165 64.2
MCO09G374 Micromonas commoda HOM05D005694 ORTHO05D007402 1.5e-53 214.5 440 36.8
Lj7A77T5 Lonicera japonica HOM05D005694 ORTHO05D007402 1.2e-42 178.3 112 75.9
Aa31LG1G15840 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.5e-37 161.4 127 64.6
Cfa023451 Carpinus fangiana HOM05D000115 ORTHO05D005317 5.8e-37 159.5 414 32.9
Aa31sc2295G20 Aethionema arabicum HOM05D005694 ORTHO05D007402 3.8e-36 156.8 132 59.1
Aa31LG1G18440 Aethionema arabicum HOM05D005694 ORTHO05D007402 7.1e-35 152.5 144 57.6
Medtr8g072720 Medicago truncatula HOM05D005694 ORTHO05D007402 3.9e-25 120.2 82 72.0
PRCOL_00002834 Prasinoderma coloniale HOM05D005694 ORTHO05D007402 3.9e-25 120.2 388 30.9
BcaNung00805 Brassica carinata HOM05D005694 ORTHO05D007402 1.5e-13 81.6 91 51.6
Aa31LG1G18450 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.6e-07 61.6 72 47.2
Aa31sc2295G10 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.6e-07 61.6 72 47.2
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 3.7e-07 60.5 403 24.1
Os01g0594800 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 8.2e-07 59.3 86 39.5
Cfa026332 Carpinus fangiana HOM05D005694 ORTHO05D123404 1.1e-06 58.9 313 23.6
BcaC07g37383 Brassica carinata HOM05D005694 ORTHO05D031998 3.1e-06 57.4 106 36.8
BolC8t47687H Brassica oleracea HOM05D005694 ORTHO05D031998 3.1e-06 57.4 106 36.8
BolC8t47689H Brassica oleracea HOM05D005694 ORTHO05D031998 3.1e-06 57.4 106 36.8
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 6.9e-06 56.2 398 25.4


User provided reference genes

Program Settings