Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003803g0010 Nicotiana tabacum HOM05D001879 ORTHO05D007957 0.0e+00 1620.1 843 100.0
Nitab4.5_0000164g0140 Nicotiana tabacum HOM05D001879 ORTHO05D007957 0.0e+00 1515.7 843 94.0
Solyc04g077930.4 Solanum lycopersicum HOM05D001879 ORTHO05D007957 0.0e+00 1354.0 912 79.8
Sopen04g031530 Solanum pennellii HOM05D001879 ORTHO05D007957 0.0e+00 1351.3 912 79.7
CAN.G724.12 Capsicum annuum HOM05D001879 ORTHO05D007957 0.0e+00 1338.2 902 79.3
PGSC0003DMG400021524 Solanum tuberosum HOM05D001879 ORTHO05D007957 4.1e-308 1061.2 636 87.3
Cc10_g05700 Coffea canephora HOM05D001879 ORTHO05D007957 2.0e-307 1058.9 855 67.3
Dinv44961 Davidia involucrata HOM05D001879 ORTHO05D007957 4.5e-291 1004.6 792 67.4
Hma1.2p1_0210F.1_g089520 Hydrangea macrophylla HOM05D001879 ORTHO05D007957 1.4e-284 983.0 844 62.9
Actinidia38101 Actinidia chinensis HOM05D001879 ORTHO05D007957 2.3e-282 975.7 852 62.4
Lj4A759G42 Lonicera japonica HOM05D001879 ORTHO05D007957 1.3e-277 959.9 854 63.5
Oeu057374.1 Olea europaea HOM05D001879 ORTHO05D007957 5.0e-274 948.0 853 62.4
Migut.N02775 Erythranthe guttata HOM05D001879 ORTHO05D007957 5.4e-268 927.9 860 60.3
Cfa013682 Carpinus fangiana HOM05D001879 ORTHO05D007957 1.8e-263 912.9 898 58.2
Gorai.002G135500 Gossypium raimondii HOM05D001879 ORTHO05D007957 1.5e-262 909.8 897 56.1
Potri.014G016900 Populus trichocarpa HOM05D001879 ORTHO05D007957 5.8e-262 907.9 890 57.0
Actinidia08249 Actinidia chinensis HOM05D001879 ORTHO05D007957 1.3e-261 906.7 807 62.1
Gohir.D01G110700 Gossypium hirsutum HOM05D001879 ORTHO05D007957 4.9e-261 904.8 914 55.5
QL12p037915 Quercus lobata HOM05D001879 ORTHO05D007957 1.9e-260 902.9 900 58.1
Gohir.A01G122900 Gossypium hirsutum HOM05D001879 ORTHO05D007957 3.2e-260 902.1 911 54.9
SalBow6G3417 Salvia bowleyana HOM05D001879 ORTHO05D007957 2.1e-259 899.4 895 57.8
FvH4_2g33210 Fragaria vesca HOM05D001879 ORTHO05D007957 2.7e-259 899.0 922 56.8
GSVIVG01009355001 Vitis vinifera HOM05D001879 ORTHO05D007957 1.0e-258 897.1 847 58.9
RcHm_v2.0_Chr6g0309461 Rosa chinensis HOM05D001879 ORTHO05D007957 1.9e-257 892.9 809 61.1
CiPaw.07G175800 Carya illinoinensis HOM05D001879 ORTHO05D007957 2.1e-256 889.4 897 56.3
FAN27G1994 Fragaria x ananassa HOM05D001879 ORTHO05D007957 4.0e-255 885.2 918 56.4
MD15G1071100 Malus domestica HOM05D001879 ORTHO05D007957 4.4e-254 881.7 881 57.7
CsaV3_4G035000 Cucumis sativus L. HOM05D001879 ORTHO05D007957 5.8e-254 881.3 889 56.4
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 7.6e-254 880.9 897 57.0
FAN15G2911 Fragaria x ananassa HOM05D001879 ORTHO05D007957 9.9e-254 880.6 921 55.8
FAN20G0243 Fragaria x ananassa HOM05D001879 ORTHO05D007957 9.9e-254 880.6 922 56.0
TWI56G1363 Tripterygium wilfordii HOM05D001879 ORTHO05D007957 1.6e-251 873.2 923 54.4
vmacro22058 Vaccinium macrocarpon HOM05D001879 ORTHO05D007957 2.1e-251 872.8 939 54.8
CANSAT11G0135 Cannabis sativa HOM05D001879 ORTHO05D007957 1.3e-250 870.2 918 54.6
MD08G1085900 Malus domestica HOM05D001879 ORTHO05D007957 3.0e-250 869.0 857 57.6
Hund05306 Selenicereus undatus HOM05D001879 ORTHO05D007957 2.8e-248 862.4 905 54.1
ClCG05G020560 Citrullus lanatus HOM05D001879 ORTHO05D007957 3.6e-248 862.1 922 55.2
FAN24G3463 Fragaria x ananassa HOM05D001879 ORTHO05D007957 1.1e-247 860.5 968 53.2
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 2.4e-247 859.4 862 55.6
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 2.4e-247 859.4 896 54.7
Sabra14G0010700 Salix brachista HOM05D001879 ORTHO05D007957 2.4e-247 859.4 900 54.0
Peaxi162Scf00081g00176 Petunia axillaris HOM05D001879 ORTHO05D007957 1.2e-246 857.1 538 83.1
Glyma.04G045100 Glycine max HOM05D001879 ORTHO05D007957 6.4e-245 851.3 800 57.0
Ca_15906_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007957 1.4e-244 850.1 884 54.2
arahy.Tifrunner.gnm1.ann1.0Z12M9 Arachis hypogaea HOM05D001879 ORTHO05D007957 3.2e-244 849.0 808 57.4
arahy.Tifrunner.gnm1.ann1.D4I9HU Arachis hypogaea HOM05D001879 ORTHO05D007957 4.2e-244 848.6 804 57.8
Manes.05G181300 Manihot esculenta HOM05D001879 ORTHO05D007957 2.1e-243 846.3 875 53.8
Eucgr.F02257 Eucalyptus grandis HOM05D001879 ORTHO05D007957 3.5e-243 845.5 898 55.0
VMungo1309G0716 Vigna mungo HOM05D001879 ORTHO05D007957 6.0e-243 844.7 891 54.0
Phvul.009G071000 Phaseolus vulgaris HOM05D001879 ORTHO05D007957 7.8e-243 844.3 891 54.1
HanXRQChr01g0027941 Helianthus annuus HOM05D001879 ORTHO05D007957 5.6e-241 838.2 921 52.6
Lj1g0023876 Lotus japonicus HOM05D001879 ORTHO05D007957 2.1e-240 836.3 867 54.7
Aqoxy6G02668 Aquilegia oxysepala HOM05D001879 ORTHO05D007957 4.8e-240 835.1 805 56.8
Glyma.06G045600 Glycine max HOM05D001879 ORTHO05D007957 6.2e-240 834.7 804 57.0
Sc26g0004180 Simmondsia chinensis HOM05D001879 ORTHO05D007957 3.1e-239 832.4 849 56.7
Psat0s3943g0040 Pisum sativum HOM05D001879 ORTHO05D007957 5.8e-238 828.2 892 53.0
Prupe.1G423800 Prunus persica HOM05D001879 ORTHO05D007957 3.2e-236 822.4 895 54.6
Medtr3g103040 Medicago truncatula HOM05D001879 ORTHO05D007957 4.2e-236 822.0 897 52.5
EL10Ac1g02390 Beta vulgaris HOM05D001879 ORTHO05D007957 7.1e-236 821.2 767 58.4
SGA_v2.0_scaffold152G36803 Striga asiatica HOM05D001879 ORTHO05D007957 6.0e-235 818.1 863 54.6
THA.LOC104820515 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 3.0e-234 815.8 888 53.0
Lalb_Chr11g0062861 Lupinus albus HOM05D001879 ORTHO05D007957 3.9e-234 815.5 872 53.8
THA.LOC104812592 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 8.7e-234 814.3 828 55.1
SalBow8G5177 Salvia bowleyana HOM05D001879 ORTHO05D007957 1.1e-233 813.9 879 54.0
Cpa.g.sc142.17 Carica papaya HOM05D001879 ORTHO05D007957 1.5e-233 813.5 899 52.7
Nn1g04585 Nelumbo nucifera HOM05D001879 ORTHO05D007957 3.3e-233 812.4 839 55.2
AUR62038791 Chenopodium quinoa HOM05D001879 ORTHO05D007957 5.6e-233 811.6 854 54.3
AL1G41290 Arabidopsis lyrata HOM05D001879 ORTHO05D007957 9.9e-230 800.8 840 54.3
Thhalv10006764m.g Eutrema salsugineum HOM05D001879 ORTHO05D007957 6.4e-229 798.1 811 54.6
AT1G27752 Arabidopsis thaliana HOM05D001879 ORTHO05D007957 4.2e-228 795.4 841 54.6
AUR62037429 Chenopodium quinoa HOM05D001879 ORTHO05D007957 4.6e-227 792.0 819 54.3
Sp1g23990 Schrenkiella parvula HOM05D001879 ORTHO05D007957 7.9e-227 791.2 819 55.1
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 8.7e-226 787.7 806 56.6
BolC3t19706H Brassica oleracea HOM05D001879 ORTHO05D007957 4.3e-225 785.4 817 53.6
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 5.6e-225 785.0 858 51.6
C03p74580 Brassica napus HOM05D001879 ORTHO05D007957 9.6e-225 784.3 820 53.8
TPR.G33684 Trifolium pratense HOM05D001879 ORTHO05D007957 8.2e-224 781.2 913 50.4
A08p26070 Brassica napus HOM05D001879 ORTHO05D007957 5.3e-223 778.5 805 54.5
BraA08t34557Z Brassica rapa HOM05D001879 ORTHO05D007957 2.0e-222 776.5 805 54.4
PSO675G4263 Papaver somniferum HOM05D001879 ORTHO05D007957 7.6e-222 774.6 852 52.8
ECA246G2822 Erigeron canadensis HOM05D001879 ORTHO05D007957 2.2e-221 773.1 811 53.8
PSO541G1802 Papaver somniferum HOM05D001879 ORTHO05D007957 3.2e-220 769.2 789 54.1
Carub.0001s2627 Capsella rubella HOM05D001879 ORTHO05D007957 1.6e-219 766.9 813 52.6
Aa31sc113G40 Aethionema arabicum HOM05D001879 ORTHO05D007957 2.7e-219 766.1 824 53.4
BcaC01g01572 Brassica carinata HOM05D001879 ORTHO05D007957 9.7e-209 731.1 817 51.8
ATR0208G030 Amborella trichopoda HOM05D001879 ORTHO05D007957 5.1e-202 708.8 907 46.5
CDE02G0795 Ceratophyllum demersum HOM05D001879 ORTHO05D007957 4.4e-201 705.7 763 51.8
unitig_578.g16146 Utricularia gibba HOM05D001879 ORTHO05D007957 5.9e-198 695.3 807 49.1
Sed0020869 Sechium edule HOM05D001879 ORTHO05D007957 1.9e-188 663.7 696 53.3
Thecc.08G089900 Theobroma cacao HOM05D001879 ORTHO05D007957 1.9e-188 663.7 682 55.6
Os03g0205000 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007957 1.8e-186 657.1 869 46.3
HPP92_009537 Vanilla planifolia HOM05D001879 ORTHO05D007957 3.7e-184 649.4 708 52.4
Zm00001eb007600 Zea mays HOM05D001879 ORTHO05D007957 7.7e-182 641.7 813 46.9
Lsat_1_v5_gn_6_112340 Lactuca sativa HOM05D001879 ORTHO05D007957 6.1e-179 632.1 884 44.8
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 1.7e-168 597.4 465 65.8
DCAR_009884 Daucus carota HOM05D001879 ORTHO05D007957 7.3e-164 582.0 853 46.2
TAR381G0637 Trochodendron aralioides HOM05D001879 ORTHO05D007957 3.1e-162 576.6 483 61.3
CSS0023334 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 7.5e-161 572.0 408 68.4
CARHR027270 Cardamine hirsuta HOM05D001879 ORTHO05D007957 1.7e-157 560.8 590 52.5
Haze_22326 Corylus avellana HOM05D001879 ORTHO05D007957 7.3e-132 475.7 500 56.4
MD03G1160700 Malus domestica HOM05D001879 ORTHO05D007957 1.1e-130 471.9 417 60.0
Mapoly0067s0042 Marchantia polymorpha HOM05D001879 ORTHO05D007957 7.9e-102 375.9 761 35.2
TAR381G1515 Trochodendron aralioides HOM05D001879 ORTHO05D007957 8.8e-93 345.9 339 60.5
CANSAT25G3038 Cannabis sativa HOM05D001879 ORTHO05D007957 8.5e-88 329.3 222 72.5
Pp3c2_23190 Physcomitrium patens HOM05D001879 ORTHO05D007957 1.4e-87 328.6 956 30.1
SMO347G0602 Selaginella moellendorffii HOM05D001879 ORTHO05D007957 2.8e-83 314.3 775 31.6
SHI08396 Sapria himalayana HOM05D001879 ORTHO05D007957 5.3e-82 310.1 538 40.3
AagrBONN_evm.TU.Sc2ySwM_362.2893 Anthoceros agrestis HOM05D001879 ORTHO05D007957 1.7e-80 305.1 663 33.2
CBR_g57086 Chara braunii HOM05D001879 ORTHO05D007957 2.7e-78 297.7 1092 28.7
Haze_22325 Corylus avellana HOM05D001879 ORTHO05D007957 5.9e-65 253.4 218 65.1
SEGI_28261 Sequoiadendron giganteum HOM05D001879 ORTHO05D007957 1.1e-55 222.6 288 46.5
BraA09t40950Z Brassica rapa HOM05D001879 ORTHO05D007957 3.4e-52 211.1 150 69.3
CSS0041216 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 2.3e-45 188.3 162 64.8
Atru.chr13.821 Acer truncatum HOM05D001879 ORTHO05D007957 1.1e-39 169.5 245 49.8
SHI08398 Sapria himalayana HOM05D001879 ORTHO05D007957 8.9e-37 159.8 193 46.1
HanXRQChr05g0145561 Helianthus annuus HOM05D001879 ORTHO05D007957 1.5e-23 115.9 66 78.8
Cfa000625 Carpinus fangiana HOM05D001879 ORTHO05D007957 1.4e-21 109.4 165 48.5
MCO02G333 Micromonas commoda HOM05D001879 ORTHO05D007957 4.9e-19 100.9 800 26.5
Cfa010565 Carpinus fangiana HOM05D001879 ORTHO05D007957 3.6e-14 84.7 105 48.6
SHI08400 Sapria himalayana HOM05D001879 ORTHO05D007957 4.8e-14 84.3 137 43.8
C05p26450 Brassica napus HOM05D001879 ORTHO05D007957 1.2e-12 79.7 54 68.5
BolC5t31366H Brassica oleracea HOM05D001879 ORTHO05D007957 1.2e-12 79.7 54 68.5
Cre13.g568750 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007957 3.4e-12 78.2 556 19.8
HPP92_009536 Vanilla planifolia HOM05D001879 ORTHO05D007957 2.9e-11 75.1 124 40.3
AagrBONN_evm.TU.Sc2ySwM_368.1487 Anthoceros agrestis HOM05D001879 ORTHO05D007957 9.3e-10 70.1 146 38.4
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 1.3e-06 59.7 52 59.6


User provided reference genes

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