Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003794g0090 Nicotiana tabacum HOM05D005944 ORTHO05D007188 2.3e-139 498.8 242 100.0
PGSC0003DMG400002225 Solanum tuberosum HOM05D005944 ORTHO05D007188 2.9e-105 385.6 243 80.2
Sopen08g020390 Solanum pennellii HOM05D005944 ORTHO05D007188 7.1e-104 380.9 243 79.0
Nitab4.5_0001515g0030 Nicotiana tabacum HOM05D005944 ORTHO05D007188 1.6e-103 379.8 242 79.3
Solyc08g066550.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 5.1e-102 374.8 244 77.9
Peaxi162Scf00227g00915 Petunia axillaris HOM05D005944 ORTHO05D007188 4.3e-101 371.7 240 77.9
Nitab4.5_0001567g0220 Nicotiana tabacum HOM05D005944 ORTHO05D007188 1.4e-88 330.1 255 66.7
PGSC0003DMG400018561 Solanum tuberosum HOM05D005944 ORTHO05D007188 4.0e-83 312.0 243 66.7
Cc08_g09670 Coffea canephora HOM05D005944 ORTHO05D007188 5.4e-80 301.6 237 63.3
Oeu031102.1 Olea europaea HOM05D005944 ORTHO05D007188 9.3e-80 300.8 240 62.5
Nitab4.5_0000664g0190 Nicotiana tabacum HOM05D005944 ORTHO05D007188 1.3e-78 297.0 247 64.8
CiPaw.07G203800 Carya illinoinensis HOM05D005944 ORTHO05D007188 1.7e-78 296.6 242 60.7
Cfa013369 Carpinus fangiana HOM05D005944 ORTHO05D007188 2.5e-77 292.7 240 62.1
Potri.006G238000 Populus trichocarpa HOM05D005944 ORTHO05D007188 3.3e-77 292.4 245 60.0
Haze_21893 Corylus avellana HOM05D005944 ORTHO05D007188 4.3e-77 292.0 240 62.1
vmacro23277 Vaccinium macrocarpon HOM05D005944 ORTHO05D007188 1.6e-76 290.0 244 60.2
CSS0001771 Camellia sinensis var. sinensis HOM05D005944 ORTHO05D007188 2.8e-76 289.3 243 60.5
Hma1.2p1_0049F.1_g028530 Hydrangea macrophylla HOM05D005944 ORTHO05D007188 2.8e-76 289.3 245 60.4
Manes.16G075200 Manihot esculenta HOM05D005944 ORTHO05D007188 8.1e-76 287.7 227 62.1
CiPaw.08G026000 Carya illinoinensis HOM05D005944 ORTHO05D007188 2.4e-75 286.2 228 61.8
MD08G1113400 Malus domestica HOM05D005944 ORTHO05D007188 3.1e-75 285.8 233 59.7
Prupe.1G447700 Prunus persica HOM05D005944 ORTHO05D007188 4.0e-75 285.4 228 61.8
Thecc.09G045700 Theobroma cacao HOM05D005944 ORTHO05D007188 1.5e-74 283.5 233 63.9
Rhsim07G0147000 Rhododendron simsii HOM05D005944 ORTHO05D007188 2.0e-74 283.1 231 59.7
TAR626G0255 Trochodendron aralioides HOM05D005944 ORTHO05D007188 3.4e-74 282.3 227 61.2
Sc09g0009310 Simmondsia chinensis HOM05D005944 ORTHO05D007188 1.7e-73 280.0 232 60.3
TWI34G0404 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 2.2e-73 279.6 222 62.6
Ca_15588_v3 Cicer arietinum L. HOM05D005944 ORTHO05D007188 3.8e-73 278.9 232 61.2
MD15G1092800 Malus domestica HOM05D005944 ORTHO05D007188 8.4e-73 277.7 238 56.3
VMungo1309G1803 Vigna mungo HOM05D005944 ORTHO05D007188 8.4e-73 277.7 235 60.9
MBI01_g42891_MAGBIO Magnolia biondii HOM05D005944 ORTHO05D007188 1.4e-72 276.9 229 59.0
DCAR_003123 Daucus carota HOM05D005944 ORTHO05D007188 2.4e-72 276.2 237 57.4
QL12p041319 Quercus lobata HOM05D005944 ORTHO05D007188 2.4e-72 276.2 230 58.3
Aqoxy7G01465 Aquilegia oxysepala HOM05D005944 ORTHO05D007188 1.2e-71 273.9 241 56.8
Cpa.g.sc78.4 Carica papaya HOM05D005944 ORTHO05D007188 1.6e-71 273.5 245 57.6
Lalb_Chr11g0064511 Lupinus albus HOM05D005944 ORTHO05D007188 1.6e-71 273.5 230 59.1
MSTRG.11696 Avicennia marina HOM05D005944 ORTHO05D007188 2.1e-71 273.1 233 60.5
Eucgr.C00599 Eucalyptus grandis HOM05D005944 ORTHO05D007188 2.1e-71 273.1 253 54.5
Nn8g39119 Nelumbo nucifera HOM05D005944 ORTHO05D007188 2.7e-71 272.7 232 59.9
Phvul.009G110100 Phaseolus vulgaris HOM05D005944 ORTHO05D007188 2.7e-71 272.7 207 64.3
Psat5g021160 Pisum sativum HOM05D005944 ORTHO05D007188 7.9e-71 271.2 231 59.3
Oeu030719.1 Olea europaea HOM05D005944 ORTHO05D007188 1.0e-70 270.8 243 57.2
Glyma.06G086100 Glycine max HOM05D005944 ORTHO05D007188 1.3e-70 270.4 204 64.7
Gorai.010G106200 Gossypium raimondii HOM05D005944 ORTHO05D007188 1.3e-70 270.4 214 63.6
Gohir.A06G092600 Gossypium hirsutum HOM05D005944 ORTHO05D007188 1.8e-70 270.0 227 61.2
Duzib168G0738 Durio zibethinus HOM05D005944 ORTHO05D007188 2.3e-70 269.6 229 60.7
Sabra06G0186300 Salix brachista HOM05D005944 ORTHO05D007188 5.1e-70 268.5 235 57.9
TWI63G0268 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 5.1e-70 268.5 227 58.1
Gohir.D06G092200 Gossypium hirsutum HOM05D005944 ORTHO05D007188 6.7e-70 268.1 214 63.1
Ah.10g034990 Amaranthus hybridus HOM05D005944 ORTHO05D007188 1.5e-69 266.9 233 58.8
Ciclev10009275m.g Citrus clementina HOM05D005944 ORTHO05D007188 1.9e-69 266.5 256 54.3
EL10Ac2g04013 Beta vulgaris HOM05D005944 ORTHO05D007188 2.5e-69 266.2 223 60.5
TPR.G15103 Trifolium pratense HOM05D005944 ORTHO05D007188 5.6e-69 265.0 243 56.0
PSO173G0044 Papaver somniferum HOM05D005944 ORTHO05D007188 9.6e-69 264.2 243 57.2
COL.COLO4_20974 Corchorus olitorius HOM05D005944 ORTHO05D007188 1.3e-68 263.8 217 60.8
AUR62009271 Chenopodium quinoa HOM05D005944 ORTHO05D007188 2.8e-68 262.7 241 57.3
EL10Ac2g04010 Beta vulgaris HOM05D005944 ORTHO05D007188 6.2e-68 261.5 223 59.6
AUR62039710 Chenopodium quinoa HOM05D005944 ORTHO05D007188 8.1e-68 261.2 224 58.5
Medtr3g109690 Medicago truncatula HOM05D005944 ORTHO05D007188 1.1e-67 260.8 232 56.5
Migut.A00199 Erythranthe guttata HOM05D005944 ORTHO05D007188 1.4e-67 260.4 234 56.8
MELO3C011137.2 Cucumis melo HOM05D005944 ORTHO05D007188 2.4e-67 259.6 240 53.3
Sed0026395 Sechium edule HOM05D005944 ORTHO05D007188 4.0e-67 258.8 241 53.5
ECA246G4186 Erigeron canadensis HOM05D005944 ORTHO05D007188 5.3e-67 258.5 229 54.6
Sc09g0009320 Simmondsia chinensis HOM05D005944 ORTHO05D007188 4.5e-66 255.4 230 57.0
Sed0020456 Sechium edule HOM05D005944 ORTHO05D007188 1.7e-65 253.4 200 57.5
CANSAT25G1052 Cannabis sativa HOM05D005944 ORTHO05D007188 4.9e-65 251.9 247 53.8
Lsat_1_v5_gn_5_33661 Lactuca sativa HOM05D005944 ORTHO05D007188 1.4e-64 250.4 212 56.1
HanXRQChr08g0234421 Helianthus annuus HOM05D005944 ORTHO05D007188 1.9e-64 250.0 222 55.9
Lj1g0013558 Lotus japonicus HOM05D005944 ORTHO05D007188 6.0e-63 245.0 213 57.3
PGR031G3052 Punica granatum HOM05D005944 ORTHO05D007188 3.0e-62 242.7 256 49.2
unitig_32.g11474 Utricularia gibba HOM05D005944 ORTHO05D007188 3.7e-60 235.7 244 50.0
SGA_v2.0_scaffold243G44289 Striga asiatica HOM05D005944 ORTHO05D007188 1.4e-59 233.8 214 54.7
Atru.chr7.2083 Acer truncatum HOM05D005944 ORTHO05D007188 4.1e-59 232.3 247 51.0
SalBow4G1457 Salvia bowleyana HOM05D005944 ORTHO05D007188 1.7e-57 226.9 214 53.7
Zm00001eb384710 Zea mays HOM05D005944 ORTHO05D007188 1.9e-56 223.4 232 47.4
Ah.02g111320 Amaranthus hybridus HOM05D005944 ORTHO05D007188 7.9e-55 218.0 228 49.6
AUR62011965 Chenopodium quinoa HOM05D005944 ORTHO05D007188 7.9e-55 218.0 230 47.4
Os06g0554100 Oryza sativa ssp. japonica HOM05D005944 ORTHO05D007188 1.8e-51 206.8 232 46.1
Sopen11g028870 Solanum pennellii HOM05D010581 ORTHO05D012655 1.8e-51 206.8 156 67.9
EL10Ac5g10487 Beta vulgaris HOM05D005944 ORTHO05D007188 6.9e-51 204.9 241 44.8
FAN27G2199 Fragaria x ananassa HOM05D005944 ORTHO05D007188 6.9e-51 204.9 204 50.5
FvH4_2g35480 Fragaria vesca HOM05D005944 ORTHO05D007188 1.5e-50 203.8 204 50.0
TWI63G1513 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 2.6e-50 203.0 211 50.2
Peaxi162Scf00247g00005 Petunia axillaris HOM05D005944 ORTHO05D007188 5.9e-50 201.8 150 69.3
THA.LOC104799702 Tarenaya hassleriana HOM05D005944 ORTHO05D007188 5.9e-50 201.8 243 46.9
HanXRQChr02g0050591 Helianthus annuus HOM05D005944 ORTHO05D007188 7.7e-50 201.4 191 50.8
FAN15G0753 Fragaria x ananassa HOM05D005944 ORTHO05D007188 1.0e-49 201.1 204 50.5
RcHm_v2.0_Chr6g0306401 Rosa chinensis HOM05D005944 ORTHO05D007188 1.3e-49 200.7 204 49.5
CARHR201600 Cardamine hirsuta HOM05D005944 ORTHO05D007188 5.0e-49 198.7 275 40.4
FAN20G0862 Fragaria x ananassa HOM05D005944 ORTHO05D007188 8.5e-49 198.0 204 49.0
Sp6g32000 Schrenkiella parvula HOM05D005944 ORTHO05D007188 3.2e-48 196.1 274 40.9
ECA233G3370 Erigeron canadensis HOM05D005944 ORTHO05D007188 3.6e-47 192.6 196 48.5
BcaB08g37038 Brassica carinata HOM05D005944 ORTHO05D007188 4.6e-47 192.2 275 42.2
A10p26150 Brassica napus HOM05D005944 ORTHO05D007188 4.6e-47 192.2 276 41.3
BraA10t44674Z Brassica rapa HOM05D005944 ORTHO05D007188 4.6e-47 192.2 276 41.3
BolC9t59349H Brassica oleracea HOM05D005944 ORTHO05D007188 1.0e-46 191.0 276 40.9
Thhalv10014372m.g Eutrema salsugineum HOM05D005944 ORTHO05D007188 1.0e-46 191.0 265 42.6
BcaC04g19210 Brassica carinata HOM05D005944 ORTHO05D007188 2.3e-46 189.9 276 39.9
C09p65200 Brassica napus HOM05D005944 ORTHO05D007188 2.3e-46 189.9 276 39.9
Solyc11g071190.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 2.3e-46 189.9 147 68.0
HPP92_024066 Vanilla planifolia HOM05D005944 ORTHO05D007188 3.9e-46 189.1 200 48.5
Carub.0006s1010 Capsella rubella HOM05D005944 ORTHO05D007188 1.7e-44 183.7 266 40.6
Aa31LG3G15570 Aethionema arabicum HOM05D005944 ORTHO05D007188 8.2e-44 181.4 281 37.7
AL6G22330 Arabidopsis lyrata HOM05D005944 ORTHO05D007188 1.8e-43 180.3 259 41.7
AT5G11620 Arabidopsis thaliana HOM05D005944 ORTHO05D007188 9.1e-43 177.9 260 40.4
HanXRQChr13g0402041 Helianthus annuus HOM05D005944 ORTHO05D007188 4.2e-40 169.1 204 44.1
Actinidia14678 Actinidia chinensis HOM05D005944 ORTHO05D007188 1.4e-38 164.1 130 63.8
Glyma.04G084500 Glycine max HOM05D005944 ORTHO05D007188 8.8e-38 161.4 123 65.9
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 2.6e-37 159.8 200 43.0
ATR0561G048 Amborella trichopoda HOM05D005944 ORTHO05D007188 9.7e-37 157.9 198 45.5
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 9.7e-37 157.9 203 42.9
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 6.5e-33 145.2 199 39.7
PSO507G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 5.5e-32 142.1 185 43.2
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 9.4e-32 141.4 199 40.2
Zm00001eb277580 Zea mays HOM05D005944 ORTHO05D007188 1.1e-27 127.9 178 43.8
SMO281G0003 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 3.8e-25 119.4 213 34.3
SMO244G0014 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 5.0e-25 119.0 230 34.3
Pp3c11_3140 Physcomitrium patens HOM05D005944 ORTHO05D007188 8.5e-25 118.2 242 33.9
SEGI_16652 Sequoiadendron giganteum HOM05D005944 ORTHO05D007188 1.5e-24 117.5 234 35.5
AagrBONN_evm.TU.Sc2ySwM_228.5588 Anthoceros agrestis HOM05D005944 ORTHO05D007188 1.8e-22 110.5 233 33.5
CDE05G1550 Ceratophyllum demersum HOM05D005944 ORTHO05D007188 6.8e-22 108.6 104 50.0
Cre09.g393550 Chlamydomonas reinhardtii HOM05D005944 ORTHO05D007188 2.4e-19 100.1 188 35.6
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 1.0e-17 94.7 225 32.9
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 1.7e-17 94.0 215 33.5
RcHm_v2.0_Chr6g0306391 Rosa chinensis HOM05D005944 ORTHO05D007188 6.8e-14 82.0 103 44.7
RcHm_v2.0_Chr6g0306281 Rosa chinensis HOM05D005944 ORTHO05D007188 2.2e-12 77.0 58 55.2
BolC2t06477H Brassica oleracea HOM05D005944 ORTHO05D007188 2.3e-09 67.0 107 39.3
RcHm_v2.0_Chr6g0306291 Rosa chinensis HOM05D005944 ORTHO05D007188 2.9e-09 66.6 54 53.7
MCO02G382 Micromonas commoda HOM05D005944 ORTHO05D007188 6.6e-09 65.5 219 27.9
C02p05290 Brassica napus HOM05D005944 ORTHO05D007188 2.5e-08 63.5 102 37.3
Mapoly0068s0072 Marchantia polymorpha HOM05D005944 ORTHO05D007188 7.3e-08 62.0 122 29.5
Cre06.g278187 Chlamydomonas reinhardtii HOM05D066552 ORTHO05D044319 1.8e-06 57.4 199 24.1


User provided reference genes

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