Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1916.7 1024 100.0
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1741.1 1024 92.5
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 0.0e+00 1531.9 1025 82.5
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 0.0e+00 1224.2 1038 68.2
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 0.0e+00 1216.8 1042 65.4
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 0.0e+00 1198.3 1029 64.8
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 0.0e+00 1193.7 1033 66.2
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 0.0e+00 1192.6 1037 66.5
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1189.5 1021 64.3
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1188.3 1041 66.3
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 0.0e+00 1181.4 1029 66.1
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 0.0e+00 1178.7 1029 64.0
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 0.0e+00 1175.2 1036 65.2
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1174.8 1031 65.4
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 0.0e+00 1174.5 1022 65.9
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 0.0e+00 1171.0 1026 65.8
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1169.8 1070 61.6
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 0.0e+00 1167.9 1035 64.6
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 0.0e+00 1167.5 1035 64.5
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 0.0e+00 1164.8 1029 62.5
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 0.0e+00 1162.5 1071 61.9
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1159.1 1070 61.7
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 0.0e+00 1155.6 1051 61.5
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 0.0e+00 1154.4 1029 65.0
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 0.0e+00 1154.0 1033 63.0
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 0.0e+00 1153.7 1025 64.5
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1152.9 1031 62.4
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 0.0e+00 1152.5 1028 62.8
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 0.0e+00 1151.0 1034 64.5
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1150.2 1034 64.4
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1147.1 1030 65.0
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 0.0e+00 1145.6 1029 64.5
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 0.0e+00 1144.4 1033 61.8
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1142.9 1030 65.0
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 0.0e+00 1140.9 1029 61.8
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 0.0e+00 1139.4 1056 64.1
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 0.0e+00 1138.6 1032 64.1
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 0.0e+00 1138.3 1033 62.9
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 0.0e+00 1133.6 1036 64.0
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1132.1 1055 60.8
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 0.0e+00 1130.9 1059 62.7
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 0.0e+00 1130.2 1043 63.4
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1128.6 1036 64.5
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1128.6 1036 64.5
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 0.0e+00 1128.2 1037 64.4
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1127.1 1044 63.7
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1125.9 1036 61.3
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1123.6 1046 60.9
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1123.6 1051 60.8
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1122.5 1045 60.9
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 0.0e+00 1120.5 1032 63.8
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 0.0e+00 1119.4 1031 64.2
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1118.6 1036 63.4
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 0.0e+00 1117.8 1021 64.0
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 0.0e+00 1116.7 1039 61.4
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 0.0e+00 1114.8 1024 64.2
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 0.0e+00 1108.6 1034 63.7
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 0.0e+00 1108.2 1030 62.6
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 0.0e+00 1102.8 1032 62.8
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 0.0e+00 1101.3 1034 60.3
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 0.0e+00 1095.1 1035 63.3
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1090.9 1035 60.3
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 0.0e+00 1087.0 1040 61.2
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 0.0e+00 1086.6 1044 61.9
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 0.0e+00 1082.0 1027 62.7
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 0.0e+00 1079.7 1032 62.5
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1077.0 1038 59.3
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1076.2 1046 61.6
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 0.0e+00 1075.5 1048 61.6
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1075.1 1046 61.6
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 7.0e-312 1074.3 1049 61.1
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 7.0e-312 1073.9 1036 61.5
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 7.0e-312 1073.5 1025 62.5
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 1.4e-311 1073.2 1027 62.0
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 2.1e-311 1072.4 990 62.5
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 3.5e-311 1071.6 1048 61.1
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 8.4e-311 1070.5 1052 61.5
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 1.4e-310 1069.7 1027 62.0
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 9.0e-310 1067.0 1048 61.1
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 4.2e-307 1058.1 1052 60.9
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 1.4e-305 1053.1 956 62.1
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 3.3e-304 1048.5 1052 57.5
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 4.1e-302 1041.6 1025 60.7
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 6.9e-302 1040.8 1032 61.2
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 1.7e-300 1036.2 1032 58.0
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 6.7e-297 1024.2 1101 56.7
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 1.5e-296 1023.1 1056 59.1
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 7.4e-296 1020.8 1028 58.5
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 2.8e-287 992.3 638 82.1
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 1.0e-265 920.6 740 68.5
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 7.5e-264 914.4 784 66.5
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 7.5e-248 861.3 570 80.9
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 6.4e-247 858.2 1084 49.7
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 2.1e-245 853.2 1098 48.0
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 1.2e-242 844.0 1105 48.9
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 3.6e-234 815.8 590 75.3
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.3e-228 797.3 1033 49.7
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 3.3e-211 739.6 570 71.8
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 1.5e-208 730.7 589 65.2
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 3.8e-199 699.5 434 84.6
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 9.3e-198 694.9 435 89.7
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.9e-190 670.6 591 62.1
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 2.0e-184 650.6 638 59.2
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 3.2e-182 643.3 1257 36.5
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 1.9e-174 617.5 364 89.3
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 5.2e-172 609.4 364 87.9
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 8.5e-167 592.0 471 66.7
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 1.5e-163 581.3 535 62.6
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 1.2e-133 481.9 364 71.4
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.1e-124 452.2 322 74.5
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 2.3e-111 407.9 957 32.6
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 3.9e-111 407.1 514 51.6
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 2.3e-103 381.3 574 44.9
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 4.3e-94 350.5 345 57.4
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.9e-90 337.8 374 53.5
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 3.5e-88 330.9 374 52.1
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 1.3e-82 312.4 216 75.0
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 1.1e-81 309.3 433 48.5
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 9.0e-76 289.7 255 55.3
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 3.2e-73 281.2 222 68.9
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 8.8e-71 273.1 617 32.9
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 1.7e-69 268.9 286 55.2
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 6.3e-69 266.9 540 33.3
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 7.7e-67 260.0 185 72.4
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 3.1e-60 238.0 308 50.6
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.9e-57 228.8 203 59.1
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 1.2e-56 226.1 239 55.2
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 4.4e-54 217.6 365 40.8
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 1.1e-52 213.0 365 41.1
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 1.8e-52 212.2 365 40.8
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 1.0e-50 206.5 365 40.0
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 2.5e-49 201.8 180 59.4
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.1e-41 176.4 581 28.4
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 8.8e-39 166.8 174 51.1
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 2.0e-38 165.6 97 85.6
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 2.0e-38 165.6 214 49.1
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 1.9e-33 149.1 82 92.7
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 2.2e-29 135.6 120 60.0
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.7e-26 125.9 177 40.1
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 2.0e-22 112.5 85 65.9
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 2.6e-22 112.1 71 80.3
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 3.2e-20 105.1 73 71.2
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 1.6e-19 102.8 182 44.0


User provided reference genes

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