Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003491g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 1.2e-98 363.2 191 100.0
Nitab4.5_0006756g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 9.5e-96 353.6 191 97.4
PGSC0003DMG400014378 Solanum tuberosum HOM05D004814 ORTHO05D005778 1.1e-88 330.1 191 90.6
Sopen10g001990 Solanum pennellii HOM05D004814 ORTHO05D005778 2.8e-87 325.5 191 89.5
Solyc10g006030.3 Solanum lycopersicum HOM05D004814 ORTHO05D005778 4.0e-86 321.6 191 89.0
CAN.G492.31 Capsicum annuum HOM05D004814 ORTHO05D005778 5.4e-83 311.2 191 85.9
Oeu049351.1 Olea europaea HOM05D004814 ORTHO05D005778 4.2e-67 258.5 190 73.7
Cc05_g14790 Coffea canephora HOM05D004814 ORTHO05D005778 7.9e-66 254.2 191 71.2
Dinv10318 Davidia involucrata HOM05D004814 ORTHO05D005778 7.9e-66 254.2 198 71.2
Oeu057089.1 Olea europaea HOM05D004814 ORTHO05D005778 1.0e-65 253.8 190 72.1
Dinv40842 Davidia involucrata HOM05D004814 ORTHO05D005778 8.7e-65 250.8 199 69.3
Lsat_1_v5_gn_9_90400 Lactuca sativa HOM05D004814 ORTHO05D005778 1.9e-64 249.6 192 72.4
DCAR_013223 Daucus carota HOM05D004814 ORTHO05D005778 2.5e-64 249.2 191 71.2
Hma1.2p1_0889F.1_g232870 Hydrangea macrophylla HOM05D004814 ORTHO05D005778 1.8e-62 243.0 209 66.5
TAR629G3287 Trochodendron aralioides HOM05D004814 ORTHO05D005778 5.3e-62 241.5 207 66.2
HanXRQChr03g0061321 Helianthus annuus HOM05D004814 ORTHO05D005778 3.4e-61 238.8 191 69.1
MSTRG.14478 Avicennia marina HOM05D004814 ORTHO05D005778 4.5e-61 238.4 187 70.1
CSS0025876 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 5.8e-61 238.0 202 68.3
CANSAT11G0174 Cannabis sativa HOM05D004814 ORTHO05D005778 2.2e-60 236.1 199 65.8
HanXRQChr13g0408121 Helianthus annuus HOM05D004814 ORTHO05D005778 2.9e-60 235.7 189 67.7
TAR626G1431 Trochodendron aralioides HOM05D004814 ORTHO05D005778 8.4e-60 234.2 207 63.3
GSVIVG01014640001 Vitis vinifera HOM05D004814 ORTHO05D005778 8.4e-60 234.2 203 66.5
A03p38040 Brassica napus HOM05D004814 ORTHO05D005778 3.2e-59 232.3 179 69.3
C03p46130 Brassica napus HOM05D004814 ORTHO05D005778 5.5e-59 231.5 175 70.3
BcaC01g04010 Brassica carinata HOM05D004814 ORTHO05D005778 7.1e-59 231.1 175 69.7
A01p40420 Brassica napus HOM05D004814 ORTHO05D005778 7.1e-59 231.1 198 66.7
BolC3t16886H Brassica oleracea HOM05D004814 ORTHO05D005778 7.1e-59 231.1 175 69.7
BraA01t04077Z Brassica rapa HOM05D004814 ORTHO05D005778 7.1e-59 231.1 198 66.7
MD03G1187000 Malus domestica HOM05D004814 ORTHO05D005778 7.1e-59 231.1 201 65.2
Actinidia30418 Actinidia chinensis HOM05D004814 ORTHO05D005778 9.3e-59 230.7 199 67.3
CiPaw.12G136400 Carya illinoinensis HOM05D004814 ORTHO05D005778 1.6e-58 229.9 209 65.1
AUR62017069 Chenopodium quinoa HOM05D004814 ORTHO05D005778 2.1e-58 229.6 196 68.4
SGA_v2.0_scaffold8G04398 Striga asiatica HOM05D004814 ORTHO05D005778 2.1e-58 229.6 190 66.8
Sc16g0007970 Simmondsia chinensis HOM05D004814 ORTHO05D005778 3.5e-58 228.8 199 68.3
EL10Ac4g07605 Beta vulgaris HOM05D004814 ORTHO05D005778 6.0e-58 228.0 196 65.3
AUR62036421 Chenopodium quinoa HOM05D004814 ORTHO05D005778 7.9e-58 227.6 195 66.2
AUR62036427 Chenopodium quinoa HOM05D004814 ORTHO05D005778 7.9e-58 227.6 195 66.2
AUR62040646 Chenopodium quinoa HOM05D004814 ORTHO05D005778 7.9e-58 227.6 195 66.2
FAN25G3790 Fragaria x ananassa HOM05D004814 ORTHO05D005778 7.9e-58 227.6 195 66.2
unitig_62.g23297 Utricularia gibba HOM05D004814 ORTHO05D005778 7.9e-58 227.6 193 65.3
Rhsim06G0227300 Rhododendron simsii HOM05D004814 ORTHO05D005778 1.0e-57 227.3 203 64.0
BraA03t12957Z Brassica rapa HOM05D004814 ORTHO05D005778 1.3e-57 226.9 185 67.0
Gohir.D11G287000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 1.3e-57 226.9 192 66.7
Gorai.007G310400 Gossypium raimondii HOM05D004814 ORTHO05D005778 1.3e-57 226.9 192 66.7
RcHm_v2.0_Chr5g0054381 Rosa chinensis HOM05D004814 ORTHO05D005778 1.3e-57 226.9 196 65.3
vmacro22713 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 1.3e-57 226.9 202 63.9
Cfa020215 Carpinus fangiana HOM05D004814 ORTHO05D005778 1.8e-57 226.5 208 63.0
Haze_09803 Corylus avellana HOM05D004814 ORTHO05D005778 1.8e-57 226.5 192 66.7
BcaNung05270 Brassica carinata HOM05D004814 ORTHO05D005778 2.3e-57 226.1 191 64.9
FvH4_3g29500 Fragaria vesca HOM05D004814 ORTHO05D005778 2.3e-57 226.1 196 65.8
FAN11G3417 Fragaria x ananassa HOM05D004814 ORTHO05D005778 2.3e-57 226.1 196 65.8
Gohir.A11G276900 Gossypium hirsutum HOM05D004814 ORTHO05D005778 2.3e-57 226.1 192 66.1
QL08p004842 Quercus lobata HOM05D004814 ORTHO05D005778 2.3e-57 226.1 205 63.9
Atru.chr2.3664 Acer truncatum HOM05D004814 ORTHO05D005778 3.0e-57 225.7 194 68.0
Actinidia05019 Actinidia chinensis HOM05D004814 ORTHO05D005778 3.0e-57 225.7 199 65.3
Aqoxy4G02247 Aquilegia oxysepala HOM05D004814 ORTHO05D005778 3.0e-57 225.7 197 66.0
BcaC05g29209 Brassica carinata HOM05D004814 ORTHO05D005778 3.0e-57 225.7 198 66.2
C05p54820 Brassica napus HOM05D004814 ORTHO05D005778 3.0e-57 225.7 198 66.2
BolC5t34154H Brassica oleracea HOM05D004814 ORTHO05D005778 3.0e-57 225.7 198 66.2
CARHR087710 Cardamine hirsuta HOM05D004814 ORTHO05D005778 3.9e-57 225.3 194 67.0
ECA240G4731 Erigeron canadensis HOM05D001580 ORTHO05D001517 3.9e-57 225.3 147 78.2
PSO675G8482 Papaver somniferum HOM05D004814 ORTHO05D005778 3.9e-57 225.3 208 63.0
Ah.04g166490 Amaranthus hybridus HOM05D004814 ORTHO05D005778 5.1e-57 224.9 194 66.5
TWI39G1010 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 5.1e-57 224.9 207 63.3
FAN16G2593 Fragaria x ananassa HOM05D004814 ORTHO05D005778 6.7e-57 224.6 196 65.3
Nn1g03216 Nelumbo nucifera HOM05D004814 ORTHO05D005778 6.7e-57 224.6 207 63.8
Sp3g11290 Schrenkiella parvula HOM05D004814 ORTHO05D005778 6.7e-57 224.6 197 65.5
Manes.03G139872 Manihot esculenta HOM05D004814 ORTHO05D005778 8.7e-57 224.2 214 62.6
TWI38G0785 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 8.7e-57 224.2 206 62.6
arahy.Tifrunner.gnm1.ann1.CWZH2K Arachis hypogaea HOM05D004814 ORTHO05D005778 1.1e-56 223.8 209 63.2
FAN21G1289 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.1e-56 223.8 196 65.3
Gohir.D01G075300 Gossypium hirsutum HOM05D004814 ORTHO05D005778 1.1e-56 223.8 194 67.0
Gorai.002G098500 Gossypium raimondii HOM05D004814 ORTHO05D005778 1.1e-56 223.8 194 67.0
PSO541G0969 Papaver somniferum HOM05D004814 ORTHO05D005778 1.1e-56 223.8 208 62.5
A05p36420 Brassica napus HOM05D004814 ORTHO05D005778 1.5e-56 223.4 152 77.0
MELO3C024899.2 Cucumis melo HOM05D004814 ORTHO05D005778 1.5e-56 223.4 207 60.9
Gohir.A01G090000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 1.5e-56 223.4 194 66.5
Sabra16G0239200 Salix brachista HOM05D004814 ORTHO05D005778 1.5e-56 223.4 213 61.0
Sed0017349 Sechium edule HOM05D004814 ORTHO05D005778 1.5e-56 223.4 202 63.9
arahy.Tifrunner.gnm1.ann1.RG8M6K Arachis hypogaea HOM05D004814 ORTHO05D005778 1.9e-56 223.0 209 63.2
BcaB06g25486 Brassica carinata HOM05D004814 ORTHO05D005778 1.9e-56 223.0 190 65.8
Peaxi162Scf00900g00010 Petunia axillaris HOM05D004814 ORTHO05D005778 1.9e-56 223.0 191 65.4
AT3G13120 Arabidopsis thaliana HOM05D004814 ORTHO05D005778 2.5e-56 222.6 194 64.9
ClCG09G021040 Citrullus lanatus HOM05D004814 ORTHO05D005778 2.5e-56 222.6 192 66.1
AL3G24860 Arabidopsis lyrata HOM05D004814 ORTHO05D005778 3.3e-56 222.2 194 64.9
arahy.Tifrunner.gnm1.ann1.0CA1AM Arachis hypogaea HOM05D004814 ORTHO05D005778 4.3e-56 221.9 209 62.7
CsaV3_7G018640 Cucumis sativus L. HOM05D004814 ORTHO05D005778 4.3e-56 221.9 207 62.8
Ah.06g181280 Amaranthus hybridus HOM05D004814 ORTHO05D005778 5.6e-56 221.5 191 66.5
Hund01909 Selenicereus undatus HOM05D004814 ORTHO05D005778 5.6e-56 221.5 194 64.9
Ciclev10009615m.g Citrus clementina HOM05D004814 ORTHO05D005778 7.4e-56 221.1 191 66.5
Glyma.08G327500 Glycine max HOM05D004814 ORTHO05D005778 7.4e-56 221.1 205 63.4
Potri.001G365600 Populus trichocarpa HOM05D004814 ORTHO05D005778 7.4e-56 221.1 209 59.3
Thhalv10021566m.g Eutrema salsugineum HOM05D004814 ORTHO05D005778 9.6e-56 220.7 198 63.6
arahy.Tifrunner.gnm1.ann1.X98J9H Arachis hypogaea HOM05D004814 ORTHO05D005778 1.3e-55 220.3 208 63.0
BraA05t22442Z Brassica rapa HOM05D004814 ORTHO05D005778 1.3e-55 220.3 192 65.1
Aa31LG8G330 Aethionema arabicum HOM05D004814 ORTHO05D005778 2.1e-55 219.5 199 64.3
Carub.0003s1246 Capsella rubella HOM05D004814 ORTHO05D005778 2.8e-55 219.2 198 64.1
PGR031G1774 Punica granatum HOM05D004814 ORTHO05D005778 2.8e-55 219.2 193 64.8
Manes.15G061900 Manihot esculenta HOM05D004814 ORTHO05D005778 3.7e-55 218.8 213 61.0
Lalb_Chr05g0211691 Lupinus albus HOM05D004814 ORTHO05D005778 6.2e-55 218.0 208 62.5
Thecc.07G016800 Theobroma cacao HOM05D004814 ORTHO05D005778 6.2e-55 218.0 198 65.7
Glyma.18G079900 Glycine max HOM05D004814 ORTHO05D005778 8.1e-55 217.6 204 62.7
Sabra11G0087000 Salix brachista HOM05D004814 ORTHO05D005778 8.1e-55 217.6 211 59.2
Potri.011G092800 Populus trichocarpa HOM05D004814 ORTHO05D005778 2.4e-54 216.1 209 59.8
Ca_20138_v3 Cicer arietinum L. HOM05D004814 ORTHO05D005778 6.9e-54 214.5 202 62.4
MD11G1202000 Malus domestica HOM05D004814 ORTHO05D005778 1.5e-53 213.4 201 62.2
Duzib213G0234 Durio zibethinus HOM05D004814 ORTHO05D005778 2.0e-53 213.0 190 64.2
Phvul.006G055300 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 2.0e-53 213.0 204 61.8
THA.LOC104822735 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 2.0e-53 213.0 195 64.1
THA.LOC104815700 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 2.6e-53 212.6 200 63.0
Eucgr.F03697 Eucalyptus grandis HOM05D004814 ORTHO05D005778 3.4e-53 212.2 195 64.1
Psat5g170120 Pisum sativum HOM05D004814 ORTHO05D005778 3.4e-53 212.2 198 62.6
Aa31LG10G250 Aethionema arabicum HOM05D004814 ORTHO05D005778 5.8e-53 211.5 195 63.1
Phvul.001G030600 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 1.0e-52 210.7 204 60.3
Medtr3g058430 Medicago truncatula HOM05D004814 ORTHO05D005778 1.3e-52 210.3 191 65.4
TPR.G30737 Trifolium pratense HOM05D004814 ORTHO05D005778 1.7e-52 209.9 206 59.7
COL.COLO4_09806 Corchorus olitorius HOM05D004814 ORTHO05D005778 2.2e-52 209.5 189 63.5
THA.LOC104810287 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 2.9e-52 209.1 196 63.3
Prupe.4G239600 Prunus persica HOM05D004814 ORTHO05D005778 6.5e-52 208.0 201 61.7
Actinidia05024 Actinidia chinensis HOM05D004814 ORTHO05D005778 8.4e-52 207.6 191 64.4
HPP92_020399 Vanilla planifolia HOM05D004814 ORTHO05D005778 1.1e-51 207.2 199 62.3
CSS0019029 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 1.4e-51 206.8 115 88.7
CDE10G1086 Ceratophyllum demersum HOM05D004814 ORTHO05D005778 2.1e-50 203.0 111 89.2
Lj1P888T30 Lonicera japonica HOM05D004814 ORTHO05D005778 3.5e-50 202.2 103 96.1
A01p40680 Brassica napus HOM05D004814 ORTHO05D005778 7.9e-50 201.1 193 62.2
ATR0624G087 Amborella trichopoda HOM05D004814 ORTHO05D005778 1.3e-49 200.3 103 95.1
Cpa.g.sc12.175 Carica papaya HOM05D004814 ORTHO05D005778 1.3e-49 200.3 103 95.1
VMungo0248G0001 Vigna mungo HOM05D004814 ORTHO05D005778 2.3e-49 199.5 103 93.2
C01p51960 Brassica napus HOM05D004814 ORTHO05D005778 5.1e-49 198.4 198 59.1
Os03g0196800 Oryza sativa ssp. japonica HOM05D004814 ORTHO05D005778 1.5e-48 196.8 112 83.0
Zm00001eb401060 Zea mays HOM05D004814 ORTHO05D005778 4.3e-48 195.3 177 61.0
BraA01t04102Z Brassica rapa HOM05D004814 ORTHO05D005778 4.8e-47 191.8 103 90.3
QL05p065674 Quercus lobata HOM05D004814 ORTHO05D005778 4.8e-47 191.8 116 82.8
Zm00001eb008100 Zea mays HOM05D004814 ORTHO05D005778 1.1e-46 190.7 199 58.3
MBI19_g45743_MAGBIO Magnolia biondii HOM05D004814 ORTHO05D005778 1.7e-44 183.3 99 88.9
QL05p065593 Quercus lobata HOM05D004814 ORTHO05D005778 8.5e-44 181.0 102 89.2
PSO832G2117 Papaver somniferum HOM05D004814 ORTHO05D005778 2.1e-42 176.4 207 53.6
MSTRG.13015 Avicennia marina HOM05D004814 ORTHO05D005778 3.9e-41 172.2 150 63.3
AagrBONN_evm.TU.Sc2ySwM_117.1321 Anthoceros agrestis HOM05D004814 ORTHO05D005778 3.3e-40 169.1 124 68.5
Mapoly0009s0107 Marchantia polymorpha HOM05D004814 ORTHO05D005778 2.8e-39 166.0 103 76.7
Pp3c20_8830 Physcomitrium patens HOM05D004814 ORTHO05D005778 6.3e-39 164.9 195 51.3
Pp3c8_18990 Physcomitrium patens HOM05D004814 ORTHO05D005778 8.2e-39 164.5 111 71.2
Pp3c24_19230 Physcomitrium patens HOM05D004814 ORTHO05D005778 1.1e-38 164.1 111 71.2
SEGI_32296 Sequoiadendron giganteum HOM05D004814 ORTHO05D005778 1.4e-35 153.7 101 73.3
CBR_g19640 Chara braunii HOM05D004814 ORTHO05D005778 1.0e-33 147.5 198 42.9
MCO07G521 Micromonas commoda HOM05D004814 ORTHO05D005778 4.1e-30 135.6 118 58.5
SMO228G0012 Selaginella moellendorffii HOM05D004814 ORTHO05D005778 5.3e-30 135.2 105 61.0
PRCOL_00000430 Prasinoderma coloniale HOM05D004814 ORTHO05D005778 1.1e-22 110.9 100 52.0
Cre03.g195650 Chlamydomonas reinhardtii HOM05D004814 ORTHO05D005778 2.9e-20 102.8 122 44.3
vmacro17432 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 4.4e-08 62.4 199 33.2
Oeu049360.1 Olea europaea HOM05D004814 ORTHO05D005778 4.1e-06 55.8 86 45.3


User provided reference genes

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