Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 0.0e+00 3616.2 1998 100.0
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 0.0e+00 3252.6 2095 87.6
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 0.0e+00 2089.3 1999 66.0
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 0.0e+00 1974.5 2133 60.1
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 0.0e+00 1872.8 1524 71.4
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 0.0e+00 1711.8 1657 63.7
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 1.1e-186 659.1 2120 34.8
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 9.4e-186 656.0 2056 36.1
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 5.2e-176 623.6 2082 34.1
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 4.8e-174 617.1 2024 33.8
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 8.2e-174 616.3 779 55.6
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 1.4e-173 615.5 2079 33.4
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 4.1e-173 614.0 1847 34.7
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 9.4e-170 602.8 1384 39.3
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 1.8e-168 598.6 2105 33.6
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 2.0e-167 595.1 2067 34.3
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 9.7e-167 592.8 2071 34.5
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 1.3e-166 592.4 2125 32.7
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 6.3e-166 590.1 2095 32.3
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 8.3e-166 589.7 2035 33.1
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 2.8e-158 564.7 1966 33.2
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 4.8e-158 563.9 986 45.8
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 4.1e-157 560.8 751 53.7
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 9.1e-157 559.7 2066 33.1
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 3.0e-152 544.7 999 43.9
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 8.9e-152 543.1 2098 32.6
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 1.6e-148 532.3 970 43.4
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 4.5e-148 530.8 977 43.2
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 4.5e-148 530.8 2042 32.7
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 3.9e-147 527.7 812 48.5
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 6.6e-147 526.9 998 45.2
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 3.6e-145 521.2 777 49.4
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.0e-144 519.6 2008 32.1
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 2.0e-143 515.4 1010 43.5
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 1.3e-142 512.7 1221 37.8
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 2.4e-141 508.4 2088 31.4
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 2.4e-141 508.4 2088 31.3
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 4.1e-141 507.7 805 49.9
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 4.1e-141 507.7 1301 37.4
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 1.6e-140 505.8 2029 32.7
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 2.0e-140 505.4 960 43.4
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 2.0e-140 505.4 2138 31.3
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 2.7e-140 505.0 2028 32.6
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 6.6e-139 500.4 1182 38.2
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 8.6e-139 500.0 2043 32.2
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 4.3e-138 497.7 2103 31.2
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 2.1e-137 495.4 2053 30.3
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 2.8e-137 495.0 949 44.2
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 3.6e-137 494.6 1966 32.6
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 4.4e-135 487.6 1279 37.6
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 5.8e-135 487.3 1027 42.9
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 9.8e-135 486.5 1166 38.9
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 2.1e-132 478.8 1135 38.8
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 3.5e-132 478.0 1290 37.7
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 1.1e-130 473.0 872 43.2
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 4.3e-130 471.1 852 44.1
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 4.3e-130 471.1 1036 40.3
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 9.5e-130 469.9 2030 32.8
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 8.1e-129 466.8 1218 39.3
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 5.2e-128 464.2 956 42.3
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 1.3e-126 459.5 1950 31.4
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 1.9e-125 455.7 2098 30.5
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 1.1e-122 446.4 1752 30.5
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 2.8e-121 441.8 881 42.5
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 8.1e-121 440.3 838 41.8
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 2.6e-119 435.3 1004 40.6
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 3.8e-118 431.4 854 43.9
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 5.4e-117 427.6 857 43.8
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 3.9e-115 421.4 1105 38.6
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 7.3e-114 417.2 818 43.3
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 2.1e-113 415.6 815 44.9
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 8.1e-113 413.7 830 42.3
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 6.9e-112 410.6 493 56.8
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 1.2e-111 409.8 1279 34.6
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 3.8e-110 404.8 863 40.4
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 6.4e-110 404.1 1346 34.3
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 1.1e-109 403.3 974 37.7
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 2.4e-109 402.1 949 38.1
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 7.1e-109 400.6 833 42.5
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 3.5e-108 398.3 954 38.8
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 1.3e-107 396.4 2125 27.7
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 1.7e-107 396.0 831 40.7
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 1.5e-106 392.9 2036 29.1
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 3.3e-106 391.7 824 41.0
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 4.8e-105 387.9 824 41.0
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 6.2e-105 387.5 816 42.4
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 3.1e-104 385.2 857 40.7
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 4.0e-104 384.8 836 41.3
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 4.0e-104 384.8 924 38.9
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 2.9e-102 378.6 533 53.1
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 3.5e-100 371.7 799 41.4
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 1.3e-99 369.8 782 42.6
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 1.5e-98 366.3 2247 28.6
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 7.4e-98 364.0 509 45.4
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 2.4e-96 359.0 1314 33.3
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 7.1e-93 347.4 847 38.6
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 1.5e-90 339.7 642 39.4
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 1.3e-89 336.7 848 40.0
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 1.8e-88 332.8 762 36.2
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 3.4e-87 328.6 719 38.0
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 3.2e-85 322.0 2058 28.0
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 2.1e-84 319.3 732 41.4
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 1.0e-83 317.0 822 36.4
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 1.4e-80 306.6 809 35.8
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 4.6e-76 291.6 1791 27.9
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 4.6e-76 291.6 746 33.6
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 1.1e-74 287.0 628 41.9
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 5.7e-74 284.6 853 34.6
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 1.7e-73 283.1 2072 27.5
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 2.2e-73 282.7 559 36.9
PGSC0003DMG402025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 6.5e-70 271.2 159 83.6
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 3.0e-67 262.3 586 41.6
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 4.7e-60 238.4 346 53.2
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 1.4e-59 236.9 241 54.4
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 6.1e-52 211.5 284 57.4
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 6.8e-51 208.0 728 36.8
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 1.2e-50 207.2 491 40.3
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 3.5e-47 195.7 733 34.1
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 8.3e-41 174.5 833 26.5
Lj4A681T41 Lonicera japonica HOM05D000237 ORTHO05D006530 6.8e-35 154.8 171 51.5
Oeu045950.1 Olea europaea HOM05D000237 ORTHO05D006530 1.2e-34 154.1 417 36.5
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 2.1e-28 133.3 209 41.6
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 4.0e-27 129.0 1719 24.0
vmacro21124 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 2.2e-25 123.2 484 31.4
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 3.7e-25 122.5 95 65.3
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 1.2e-23 117.5 147 44.2
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 8.6e-22 111.3 85 68.2
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 5.6e-21 108.6 215 34.9
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 3.6e-20 105.9 110 61.8
ATR0172G001 Amborella trichopoda HOM05D000237 ORTHO05D006530 4.9e-17 95.5 131 42.0
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 1.9e-16 93.6 131 44.3
Cpa.g.sc1156.5 Carica papaya HOM05D000237 ORTHO05D006530 1.6e-15 90.5 305 32.8
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 3.6e-12 79.3 231 31.2
SEGI_02602 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 1.5e-10 73.9 155 34.2
Dinv14698 Davidia involucrata HOM05D000237 ORTHO05D006530 1.7e-09 70.5 380 27.9
SEGI_15365 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 2.2e-09 70.1 448 27.5
Oeu047175.1 Olea europaea HOM05D000237 ORTHO05D006530 1.7e-06 60.5 160 29.4
Lj4P681T20 Lonicera japonica HOM05D000237 ORTHO05D006530 2.3e-06 60.1 135 39.3


User provided reference genes

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