Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 2.7e-248 862.1 630 100.0
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 4.4e-222 775.0 657 86.8
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 1.8e-220 769.6 685 87.4
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 2.3e-215 752.7 677 79.5
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 1.3e-213 746.9 678 82.6
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 9.1e-212 740.7 678 82.4
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 4.3e-169 599.0 681 68.4
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 4.7e-168 595.5 682 72.7
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 4.0e-167 592.4 689 66.5
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 2.6e-166 589.7 672 73.4
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 2.2e-165 586.6 668 73.1
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 2.9e-165 586.3 663 69.5
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 3.8e-165 585.9 675 69.2
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 3.8e-165 585.9 668 73.2
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 3.8e-165 585.9 678 70.6
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 2.7e-163 579.7 680 66.5
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 1.3e-162 577.4 684 67.4
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 3.9e-162 575.9 675 66.7
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 3.9e-162 575.9 685 67.7
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 4.3e-161 572.4 684 66.8
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 9.6e-161 571.2 632 74.4
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 1.6e-160 570.5 681 65.3
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 2.8e-160 569.7 671 68.3
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 2.8e-160 569.7 688 71.8
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 1.1e-159 567.8 686 66.0
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 2.4e-159 566.6 671 68.6
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 2.4e-159 566.6 664 66.4
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 1.5e-158 563.9 675 68.6
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 3.4e-158 562.8 669 70.4
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 4.4e-158 562.4 676 71.0
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 5.8e-158 562.0 675 70.7
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 9.9e-158 561.2 682 64.7
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 1.7e-157 560.5 674 68.0
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 4.9e-157 558.9 670 64.9
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 4.9e-157 558.9 706 57.4
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 6.4e-157 558.5 652 64.9
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 8.4e-157 558.1 687 64.2
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 1.1e-156 557.8 671 65.6
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 1.1e-156 557.8 672 68.6
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 1.4e-156 557.4 683 68.5
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 1.4e-156 557.4 677 62.5
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 2.4e-156 556.6 683 62.5
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 2.4e-156 556.6 681 65.2
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 3.2e-156 556.2 685 68.5
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 4.2e-156 555.8 677 70.9
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 7.1e-156 555.1 666 68.8
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 2.1e-155 553.5 674 68.8
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 2.1e-155 553.5 665 70.5
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 4.6e-155 552.4 681 68.6
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 3.0e-154 549.7 679 68.6
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 5.1e-154 548.9 680 59.0
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 8.7e-154 548.1 662 66.8
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 8.7e-154 548.1 670 68.5
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 8.7e-154 548.1 720 57.5
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 4.3e-153 545.8 676 67.5
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 4.3e-153 545.8 671 65.0
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 4.3e-153 545.8 679 68.6
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 7.4e-153 545.0 693 63.8
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 7.4e-153 545.0 695 67.6
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 1.1e-151 541.2 659 67.8
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 1.4e-151 540.8 674 67.8
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 1.4e-151 540.8 677 63.8
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 6.9e-151 538.5 674 67.2
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 2.0e-150 537.0 669 64.1
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 4.5e-150 535.8 680 62.6
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 4.5e-150 535.8 660 67.6
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 7.6e-150 535.0 559 72.6
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 2.2e-149 533.5 670 62.2
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 4.9e-149 532.3 654 68.3
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 6.4e-149 531.9 667 63.7
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 1.1e-148 531.2 670 65.8
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 5.5e-148 528.9 655 66.7
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 1.2e-147 527.7 653 66.5
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 2.7e-147 526.6 652 64.0
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 1.0e-146 524.6 651 63.6
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 6.7e-146 521.9 661 63.1
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 6.7e-146 521.9 662 64.8
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 6.7e-146 521.9 659 63.6
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 8.7e-146 521.5 665 62.7
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 8.7e-146 521.5 661 63.1
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 8.7e-146 521.5 661 63.1
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 1.1e-145 521.2 650 63.1
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 1.5e-145 520.8 661 62.6
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 1.9e-145 520.4 660 63.0
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 1.9e-145 520.4 661 63.1
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 1.9e-145 520.4 661 63.1
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 2.5e-145 520.0 574 63.8
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 1.3e-144 517.7 652 63.2
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 1.3e-144 517.7 663 62.3
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 2.8e-144 516.5 654 65.1
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 6.2e-144 515.4 672 66.8
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 8.1e-144 515.0 665 62.0
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 4.5e-142 509.2 663 66.7
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 5.8e-142 508.8 659 58.6
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.1e-140 504.6 662 59.2
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 3.2e-140 503.1 695 63.9
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 1.2e-139 501.1 652 62.1
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 1.3e-138 497.7 678 61.1
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 8.7e-138 495.0 553 66.9
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 9.6e-137 491.5 657 59.2
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 1.6e-136 490.7 668 59.9
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 2.8e-136 490.0 646 63.2
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 6.9e-135 485.3 661 64.1
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 1.0e-133 481.5 605 67.9
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 6.1e-131 472.2 662 59.2
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 6.3e-128 462.2 475 84.0
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 1.8e-127 460.7 621 62.6
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 3.2e-124 449.9 673 61.2
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 9.4e-124 448.4 670 47.8
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.1e-121 441.4 677 57.3
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 1.7e-120 437.6 647 58.1
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 8.5e-117 425.2 487 76.4
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 3.6e-115 419.9 524 67.2
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 2.8e-112 410.2 525 67.2
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 1.3e-109 401.4 604 55.0
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 2.5e-108 397.1 520 68.3
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 2.0e-105 387.5 524 67.2
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 1.2e-99 368.2 679 47.0
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 1.0e-93 348.6 257 70.4
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.5e-92 344.7 663 44.8
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 6.1e-91 339.3 523 55.3
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 1.8e-90 337.8 668 44.9
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 2.2e-88 330.9 268 65.7
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.2e-86 325.1 622 46.3
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 3.3e-76 290.4 308 57.5
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 2.1e-75 287.7 459 57.7
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 8.0e-75 285.8 225 77.8
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.2e-73 282.0 469 63.1
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 2.0e-73 281.2 509 49.9
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 4.1e-71 273.5 300 54.3
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 2.1e-67 261.2 507 37.3
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 1.2e-62 245.4 319 74.3
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 2.3e-61 241.1 279 85.7
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 3.8e-56 223.8 171 84.8
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 3.8e-56 223.8 240 49.6
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 1.6e-51 208.4 303 43.6
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 1.3e-48 198.7 255 47.1
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 7.1e-47 193.0 259 47.1
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 8.7e-45 186.0 251 47.8
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 3.3e-44 184.1 183 56.3
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 1.3e-40 172.2 270 85.2
Dinv12692 Davidia involucrata HOM05D003766 ORTHO05D004607 8.4e-40 169.5 87 89.7
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 9.3e-39 166.0 93 86.0
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 8.7e-37 159.5 257 41.6
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 1.5e-36 158.7 93 82.8
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 7.6e-33 146.4 321 58.9
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 1.6e-30 138.7 80 83.8
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 6.9e-26 123.2 157 50.3
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 2.5e-23 114.8 82 69.5
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 1.8e-18 98.6 123 39.0
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 2.2e-16 91.7 229 32.8
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 3.9e-13 80.9 112 39.3
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 1.3e-08 65.9 106 41.5
C07p05430 Brassica napus HOM05D003766 ORTHO05D016749 1.1e-07 62.8 133 37.6
Oeu002213.1 Olea europaea HOM05D003766 ORTHO05D004607 1.4e-07 62.4 144 34.0
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 1.9e-07 62.0 113 34.5
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 7.2e-07 60.1 161 29.2
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 4.6e-06 57.4 186 30.1
Hma1.2p1_0632F.1_g192420 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 7.9e-06 56.6 37 78.4
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 7.9e-06 56.6 37 78.4


User provided reference genes

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