Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003382g0080 Nicotiana tabacum HOM05D002880 ORTHO05D003450 1.3e-165 586.3 292 100.0
Nitab4.5_0005660g0030 Nicotiana tabacum HOM05D002880 ORTHO05D003450 1.4e-114 416.8 207 98.6
Solyc02g083900.3 Solanum lycopersicum HOM05D002880 ORTHO05D003450 4.2e-111 405.2 317 70.3
Sopen02g028690 Solanum pennellii HOM05D002880 ORTHO05D003450 4.2e-111 405.2 317 70.3
Peaxi162Scf00083g00425 Petunia axillaris HOM05D002880 ORTHO05D003450 4.7e-110 401.7 318 69.5
CAN.G1671.12 Capsicum annuum HOM05D002880 ORTHO05D003450 5.2e-101 371.7 251 77.3
Dinv40086 Davidia involucrata HOM05D002880 ORTHO05D003450 2.0e-100 369.8 321 64.2
Lsat_1_v5_gn_2_75940 Lactuca sativa HOM05D002880 ORTHO05D003450 2.6e-100 369.4 319 63.3
HanXRQChr13g0414661 Helianthus annuus HOM05D002880 ORTHO05D003450 3.7e-99 365.5 319 62.4
HanXRQChr14g0441401 Helianthus annuus HOM05D002880 ORTHO05D003450 3.7e-99 365.5 318 61.9
ECA238G3174 Erigeron canadensis HOM05D002880 ORTHO05D003450 5.3e-98 361.7 319 61.8
SGA_v2.0_scaffold78G25389 Striga asiatica HOM05D002880 ORTHO05D003450 3.5e-97 359.0 320 62.5
SalBow3G1624 Salvia bowleyana HOM05D002880 ORTHO05D003450 1.0e-96 357.5 320 62.2
Migut.H01155 Erythranthe guttata HOM05D002880 ORTHO05D003450 1.7e-96 356.7 323 62.5
Oeu005318.1 Olea europaea HOM05D002880 ORTHO05D003450 2.9e-96 355.9 322 63.4
DCAR_025997 Daucus carota HOM05D002880 ORTHO05D003450 2.5e-95 352.8 327 61.8
Sc07g0000970 Simmondsia chinensis HOM05D002880 ORTHO05D003450 3.6e-94 349.0 323 60.4
MSTRG.2713 Avicennia marina HOM05D002880 ORTHO05D003450 4.0e-93 345.5 320 60.3
Lj2C468G7 Lonicera japonica HOM05D002880 ORTHO05D003450 3.4e-92 342.4 316 60.4
TWI09G0522 Tripterygium wilfordii HOM05D002880 ORTHO05D003450 9.8e-92 340.9 318 61.0
QL06p032715 Quercus lobata HOM05D002880 ORTHO05D003450 1.1e-90 337.4 322 60.6
Ah.03g148750 Amaranthus hybridus HOM05D002880 ORTHO05D003450 1.8e-90 336.7 326 61.0
CSS0038464 Camellia sinensis var. sinensis HOM05D002880 ORTHO05D003450 2.4e-90 336.3 332 57.5
CSS0040827 Camellia sinensis var. sinensis HOM05D002880 ORTHO05D003450 2.4e-90 336.3 332 57.5
Hund16489 Selenicereus undatus HOM05D002880 ORTHO05D003450 3.1e-90 335.9 326 60.4
Thecc.01G019100 Theobroma cacao HOM05D002880 ORTHO05D003450 3.1e-90 335.9 319 60.2
Eucgr.I02351 Eucalyptus grandis HOM05D002880 ORTHO05D003450 4.1e-90 335.5 319 59.6
Duzib147G0886 Durio zibethinus HOM05D002880 ORTHO05D003450 5.4e-90 335.1 280 64.6
EL10Ac6g15479 Beta vulgaris HOM05D002880 ORTHO05D003450 7.0e-90 334.7 326 59.5
Ciclev10024677m.g Citrus clementina HOM05D002880 ORTHO05D003450 9.1e-90 334.3 319 60.2
Rhsim10G0212500 Rhododendron simsii HOM05D002880 ORTHO05D003450 1.2e-89 334.0 322 58.4
Aa31LG6G13030 Aethionema arabicum HOM05D002880 ORTHO05D003450 3.5e-89 332.4 275 66.5
Actinidia17445 Actinidia chinensis HOM05D002880 ORTHO05D003450 4.5e-89 332.0 323 58.8
AUR62003370 Chenopodium quinoa HOM05D002880 ORTHO05D003450 4.5e-89 332.0 325 60.0
AUR62029462 Chenopodium quinoa HOM05D002880 ORTHO05D003450 4.5e-89 332.0 325 60.0
Atru.chr1.3786 Acer truncatum HOM05D002880 ORTHO05D003450 5.9e-89 331.6 317 59.6
Gohir.A11G175612 Gossypium hirsutum HOM05D002880 ORTHO05D003450 2.9e-88 329.3 319 58.9
CiPaw.07G058400 Carya illinoinensis HOM05D002880 ORTHO05D003450 3.8e-88 328.9 320 59.1
Duzib187G1438 Durio zibethinus HOM05D002880 ORTHO05D003450 6.5e-88 328.2 319 59.2
Gohir.D11G183201 Gossypium hirsutum HOM05D002880 ORTHO05D003450 6.5e-88 328.2 319 58.9
Gorai.007G195100 Gossypium raimondii HOM05D002880 ORTHO05D003450 6.5e-88 328.2 319 58.9
Gorai.003G009700 Gossypium raimondii HOM05D002880 ORTHO05D003450 8.5e-88 327.8 319 58.6
Potri.007G057900 Populus trichocarpa HOM05D002880 ORTHO05D003450 1.5e-87 327.0 318 58.8
COL.COLO4_21911 Corchorus olitorius HOM05D002880 ORTHO05D003450 2.5e-87 326.2 316 58.9
Cfa006971 Carpinus fangiana HOM05D002880 ORTHO05D003450 4.2e-87 325.5 319 58.3
Gohir.D03G009500 Gossypium hirsutum HOM05D002880 ORTHO05D003450 7.2e-87 324.7 319 58.3
Potri.005G114300 Populus trichocarpa HOM05D002880 ORTHO05D003450 7.2e-87 324.7 319 58.9
THA.LOC104804262 Tarenaya hassleriana HOM05D002880 ORTHO05D003450 3.6e-86 322.4 320 58.4
Lalb_Chr09g0321751 Lupinus albus HOM05D002880 ORTHO05D003450 4.7e-86 322.0 319 58.3
Lalb_Chr16g0377511 Lupinus albus HOM05D002880 ORTHO05D003450 8.0e-86 321.2 317 58.4
Phvul.002G108900 Phaseolus vulgaris HOM05D002880 ORTHO05D003450 1.0e-85 320.9 317 58.4
Haze_03765 Corylus avellana HOM05D002880 ORTHO05D003450 1.8e-85 320.1 309 59.5
Manes.01G145600 Manihot esculenta HOM05D002880 ORTHO05D003450 1.8e-85 320.1 318 57.9
Sabra05G0093500 Salix brachista HOM05D002880 ORTHO05D003450 2.3e-85 319.7 318 58.2
Lj2g0011330 Lotus japonicus HOM05D002880 ORTHO05D003450 4.0e-85 318.9 319 58.3
CANSAT01G1381 Cannabis sativa HOM05D002880 ORTHO05D003450 1.2e-84 317.4 318 56.9
MELO3C007903.2 Cucumis melo HOM05D002880 ORTHO05D003450 1.2e-84 317.4 318 58.5
Psat2g154720 Pisum sativum HOM05D002880 ORTHO05D003450 1.2e-84 317.4 307 59.6
Glyma.01G166400 Glycine max HOM05D002880 ORTHO05D003450 2.0e-84 316.6 316 57.9
Glyma.11G077000 Glycine max HOM05D002880 ORTHO05D003450 2.0e-84 316.6 317 57.7
Medtr5g022000 Medicago truncatula HOM05D002880 ORTHO05D003450 2.0e-84 316.6 320 56.2
Ca_25825_v3 Cicer arietinum L. HOM05D002880 ORTHO05D003450 2.6e-84 316.2 321 56.1
THA.LOC104819750 Tarenaya hassleriana HOM05D002880 ORTHO05D003450 2.6e-84 316.2 319 57.4
CsaV3_6G047090 Cucumis sativus L. HOM05D002880 ORTHO05D003450 4.4e-84 315.5 318 58.5
arahy.Tifrunner.gnm1.ann1.E76U4D Arachis hypogaea HOM05D002880 ORTHO05D003450 5.7e-84 315.1 319 57.1
arahy.Tifrunner.gnm1.ann1.FN5NT6 Arachis hypogaea HOM05D002880 ORTHO05D003450 5.7e-84 315.1 319 57.1
ClCG01G020300 Citrullus lanatus HOM05D002880 ORTHO05D003450 1.3e-83 313.9 318 57.5
Cc07_g10710 Coffea canephora HOM05D002880 ORTHO05D003450 1.7e-83 313.5 316 57.3
Prupe.7G168000 Prunus persica HOM05D002880 ORTHO05D003450 2.2e-83 313.2 334 55.1
Sed0027366 Sechium edule HOM05D002880 ORTHO05D003450 3.7e-83 312.4 318 56.9
RcHm_v2.0_Chr2g0099461 Rosa chinensis HOM05D002880 ORTHO05D003450 4.9e-83 312.0 323 57.0
PGR119G1290 Punica granatum HOM05D002880 ORTHO05D003450 6.3e-83 311.6 318 56.3
Aqoxy5G01784 Aquilegia oxysepala HOM05D002880 ORTHO05D003450 1.8e-82 310.1 320 56.9
FAN19G0100 Fragaria x ananassa HOM05D002880 ORTHO05D003450 2.4e-82 309.7 323 56.3
FvH4_1g11860 Fragaria vesca HOM05D002880 ORTHO05D003450 5.4e-82 308.5 323 56.0
Nn5g30154 Nelumbo nucifera HOM05D002880 ORTHO05D003450 5.4e-82 308.5 316 56.6
FAN28G1007 Fragaria x ananassa HOM05D002880 ORTHO05D003450 9.2e-82 307.8 323 55.7
GSVIVG01018783001 Vitis vinifera HOM05D002880 ORTHO05D003450 9.2e-82 307.8 317 56.8
Aa31LG8G15100 Aethionema arabicum HOM05D002880 ORTHO05D003450 1.2e-81 307.4 323 55.7
FAN23G1788 Fragaria x ananassa HOM05D002880 ORTHO05D003450 1.6e-81 307.0 323 56.0
PSO541G3550 Papaver somniferum HOM05D002880 ORTHO05D003450 1.6e-81 307.0 335 54.6
FAN26G2624 Fragaria x ananassa HOM05D002880 ORTHO05D003450 2.0e-81 306.6 319 55.8
AT4G36080 Arabidopsis thaliana HOM05D002880 ORTHO05D003450 2.7e-81 306.2 304 59.9
MBI14_g08218_MAGBIO Magnolia biondii HOM05D002880 ORTHO05D003450 2.7e-81 306.2 334 54.5
C03p58840 Brassica napus HOM05D002880 ORTHO05D003450 3.5e-81 305.8 318 57.2
Sabra07G0049600 Salix brachista HOM05D002880 ORTHO05D003450 3.5e-81 305.8 361 51.2
CARHR108410 Cardamine hirsuta HOM05D002880 ORTHO05D003450 5.9e-81 305.1 304 59.5
PSO675G2090 Papaver somniferum HOM05D002880 ORTHO05D003450 5.9e-81 305.1 335 54.3
A06p33500 Brassica napus HOM05D002880 ORTHO05D003450 1.0e-80 304.3 320 56.2
BolC3t18143H Brassica oleracea HOM05D002880 ORTHO05D003450 1.0e-80 304.3 318 56.9
BraA06t26284Z Brassica rapa HOM05D002880 ORTHO05D003450 1.0e-80 304.3 320 56.2
BcaB08g34776 Brassica carinata HOM05D002880 ORTHO05D003450 1.7e-80 303.5 304 59.2
Carub.0003s3206 Capsella rubella HOM05D002880 ORTHO05D003450 1.7e-80 303.5 304 59.5
Thhalv10022516m.g Eutrema salsugineum HOM05D002880 ORTHO05D003450 3.8e-80 302.4 304 59.2
AL7G14960 Arabidopsis lyrata HOM05D002880 ORTHO05D003450 5.0e-80 302.0 304 59.2
BolC9t54256H Brassica oleracea HOM05D002880 ORTHO05D003450 6.6e-80 301.6 303 58.4
BcaB07g31700 Brassica carinata HOM05D002880 ORTHO05D003450 1.1e-79 300.8 303 58.1
AL3G50950 Arabidopsis lyrata HOM05D002880 ORTHO05D003450 1.5e-79 300.4 304 58.6
AT2G17930 Arabidopsis thaliana HOM05D002880 ORTHO05D003450 1.5e-79 300.4 304 58.9
A09p11620 Brassica napus HOM05D002880 ORTHO05D003450 1.5e-79 300.4 303 58.4
Thhalv10024177m.g Eutrema salsugineum HOM05D002880 ORTHO05D003450 1.5e-79 300.4 319 55.2
C09p13660 Brassica napus HOM05D002880 ORTHO05D003450 1.9e-79 300.1 303 58.1
CARHR244480 Cardamine hirsuta HOM05D002880 ORTHO05D003450 1.9e-79 300.1 319 54.2
Actinidia22981 Actinidia chinensis HOM05D002880 ORTHO05D003450 2.5e-79 299.7 263 62.0
Sp3g31350 Schrenkiella parvula HOM05D002880 ORTHO05D003450 3.3e-79 299.3 303 57.8
vmacro21921 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 9.5e-79 297.7 252 63.5
Carub.0007s0415 Capsella rubella HOM05D002880 ORTHO05D003450 1.7e-75 287.0 304 57.2
TPR.G18175 Trifolium pratense HOM05D002880 ORTHO05D003450 2.4e-74 283.1 285 57.9
Cpa.g.sc6.247 Carica papaya HOM05D002880 ORTHO05D003450 1.6e-73 280.4 298 56.0
HPP92_000448 Vanilla planifolia HOM05D002880 ORTHO05D003450 2.0e-73 280.0 319 50.5
BraA09t36808Z Brassica rapa HOM05D002880 ORTHO05D003450 4.6e-73 278.9 288 57.6
BraA01t00252Z Brassica rapa HOM05D002880 ORTHO05D003450 2.3e-72 276.6 319 50.8
A01p02660 Brassica napus HOM05D002880 ORTHO05D003450 1.1e-71 274.2 319 50.2
C01p02960 Brassica napus HOM05D002880 ORTHO05D003450 7.3e-71 271.6 319 49.5
BolC1t00282H Brassica oleracea HOM05D002880 ORTHO05D003450 7.3e-71 271.6 319 49.5
SHI08554 Sapria himalayana HOM05D002880 ORTHO05D003450 8.0e-70 268.1 249 59.8
Gohir.A02G170550 Gossypium hirsutum HOM05D002880 ORTHO05D003450 1.3e-67 260.8 234 60.7
SMO147G0347 Selaginella moellendorffii HOM05D002880 ORTHO05D003450 9.2e-66 254.6 276 50.7
Lj6g0023005 Lotus japonicus HOM05D002880 ORTHO05D003450 4.6e-65 252.3 318 48.7
Mapoly0010s0094 Marchantia polymorpha HOM05D002880 ORTHO05D003450 3.3e-63 246.1 316 47.5
Pp3c17_20000 Physcomitrium patens HOM05D002880 ORTHO05D003450 9.5e-63 244.6 316 47.5
AagrBONN_evm.TU.Sc2ySwM_368.861 Anthoceros agrestis HOM05D002880 ORTHO05D003450 1.6e-62 243.8 305 47.9
Hma1.2p1_0258F.1_g104160 Hydrangea macrophylla HOM05D002880 ORTHO05D003450 5.1e-56 222.2 251 52.6
ATR0560G004 Amborella trichopoda HOM05D002880 ORTHO05D003450 2.1e-54 216.9 120 85.0
ATR0633G003 Amborella trichopoda HOM05D002880 ORTHO05D003450 2.1e-54 216.9 120 85.0
CBR_g31691 Chara braunii HOM05D002880 ORTHO05D003450 1.1e-53 214.5 320 42.5
MD15G1245900 Malus domestica HOM05D002880 ORTHO05D003450 9.6e-47 191.4 243 49.8
MD02G1132600 Malus domestica HOM05D002880 ORTHO05D003450 2.4e-45 186.8 266 44.7
MCO16G028 Micromonas commoda HOM05D002880 ORTHO05D003450 1.1e-34 151.4 270 38.9
MELO3C027087.2 Cucumis melo HOM05D002880 ORTHO05D003450 3.3e-23 113.2 142 50.0
PRCOL_00005144 Prasinoderma coloniale HOM05D002880 ORTHO05D003450 1.3e-22 111.3 183 36.1
Cre02.g088750 Chlamydomonas reinhardtii HOM05D002880 ORTHO05D003450 4.0e-21 106.3 161 34.8
AL5G13110 Arabidopsis lyrata HOM05D002880 ORTHO05D003450 3.9e-16 89.7 54 83.3
TAR625G0893 Trochodendron aralioides HOM05D002880 ORTHO05D003450 1.3e-14 84.7 96 53.1
Cfa023980 Carpinus fangiana HOM05D002880 ORTHO05D003450 9.0e-13 78.6 165 31.5
ATR0259G001 Amborella trichopoda HOM05D002880 ORTHO05D003450 2.2e-11 73.9 186 32.3
TAR381G0408 Trochodendron aralioides HOM05D002880 ORTHO05D003450 1.4e-10 71.2 98 46.9
vmacro21922 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 3.3e-07 60.1 29 100.0
BcaC04g22939 Brassica carinata HOM05D002880 ORTHO05D003450 1.6e-06 57.8 29 93.1
Actinidia00882 Actinidia chinensis HOM05D002880 ORTHO05D003450 3.7e-06 56.6 29 93.1
COL.COLO4_21196 Corchorus olitorius HOM05D002880 ORTHO05D003450 4.8e-06 56.2 29 93.1


User provided reference genes

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