Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003361g0010 Nicotiana tabacum HOM05D006280 ORTHO05D007876 0.0e+00 1306.2 697 100.0
Nitab4.5_0001542g0030 Nicotiana tabacum HOM05D006280 ORTHO05D007876 0.0e+00 1195.6 697 92.3
CAN.G170.124 Capsicum annuum HOM05D006280 ORTHO05D007876 0.0e+00 1136.3 702 85.8
Peaxi162Scf00428g00816 Petunia axillaris HOM05D006280 ORTHO05D007876 0.0e+00 1109.0 702 85.0
PGSC0003DMG400006815 Solanum tuberosum HOM05D006280 ORTHO05D007876 0.0e+00 1104.7 702 84.2
Sopen01g033930 Solanum pennellii HOM05D006280 ORTHO05D007876 0.0e+00 1091.6 701 83.6
Solyc01g086930.4 Solanum lycopersicum HOM05D006280 ORTHO05D007876 1.0e-288 996.5 636 83.8
Migut.B01331 Erythranthe guttata HOM05D006280 ORTHO05D007876 6.0e-188 661.8 703 53.2
MSTRG.20601 Avicennia marina HOM05D006280 ORTHO05D007876 2.3e-176 623.2 703 51.4
Cc02_g27560 Coffea canephora HOM05D006280 ORTHO05D007876 2.1e-172 610.1 700 51.3
Actinidia20679 Actinidia chinensis HOM05D006280 ORTHO05D007876 4.0e-168 595.9 696 52.3
SGA_v2.0_scaffold167G38459 Striga asiatica HOM05D006280 ORTHO05D007876 1.5e-167 594.0 689 50.1
CSS0048133 Camellia sinensis var. sinensis HOM05D006280 ORTHO05D007876 2.2e-166 590.1 698 53.2
Lj9A629T105 Lonicera japonica HOM05D006280 ORTHO05D007876 1.9e-157 560.5 698 50.0
SalBow7G2237 Salvia bowleyana HOM05D006280 ORTHO05D007876 6.0e-156 555.4 711 48.4
Haze_03235 Corylus avellana HOM05D006280 ORTHO05D007876 1.7e-150 537.3 705 47.8
TWI09G0861 Tripterygium wilfordii HOM05D006280 ORTHO05D007876 2.7e-148 530.0 705 46.7
Thecc.01G413600 Theobroma cacao HOM05D006280 ORTHO05D007876 1.8e-147 527.3 705 46.4
QL04p005292 Quercus lobata HOM05D006280 ORTHO05D007876 1.3e-145 521.2 707 47.1
Oeu039119.3 Olea europaea HOM05D006280 ORTHO05D007876 2.6e-143 513.5 698 47.1
CiPaw.13G003200 Carya illinoinensis HOM05D006280 ORTHO05D007876 1.9e-141 507.3 706 46.0
SGA_v2.0_scaffold119G32715 Striga asiatica HOM05D006280 ORTHO05D007876 2.8e-137 493.4 703 45.2
Duzib268G1473 Durio zibethinus HOM05D006280 ORTHO05D007876 8.5e-134 481.9 704 43.9
Hma1.2p1_0280F.1_g112910 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 8.5e-134 481.9 685 47.2
Gohir.A11G160200 Gossypium hirsutum HOM05D006280 ORTHO05D007876 9.3e-133 478.4 706 45.3
Gohir.D11G166400 Gossypium hirsutum HOM05D006280 ORTHO05D007876 1.3e-131 474.6 706 44.8
Gorai.007G177400 Gossypium raimondii HOM05D006280 ORTHO05D007876 3.0e-131 473.4 706 44.6
TWI73G0538 Tripterygium wilfordii HOM05D006280 ORTHO05D007876 5.1e-131 472.6 704 44.3
MELO3C023535.2 Cucumis melo HOM05D006280 ORTHO05D007876 1.9e-130 470.7 696 45.0
Sc14g0005130 Simmondsia chinensis HOM05D006280 ORTHO05D007876 1.1e-125 454.9 711 42.6
Potri.001G269700 Populus trichocarpa HOM05D006280 ORTHO05D007876 9.4e-125 451.8 689 45.0
Ciclev10030953m.g Citrus clementina HOM05D006280 ORTHO05D007876 1.4e-123 448.0 686 44.0
MD02G1315100 Malus domestica HOM05D006280 ORTHO05D007876 1.1e-122 444.9 702 43.0
Hund03633 Selenicereus undatus HOM05D006280 ORTHO05D007876 2.4e-120 437.2 700 41.4
Lsat_1_v5_gn_4_46080 Lactuca sativa HOM05D006280 ORTHO05D007876 9.1e-120 435.3 704 42.8
Cpa.g.sc234.10 Carica papaya HOM05D006280 ORTHO05D007876 5.7e-114 416.0 708 40.7
PGR044G1516 Punica granatum HOM05D006280 ORTHO05D007876 2.8e-113 413.7 695 40.6
EL10Ac6g13519 Beta vulgaris HOM05D006280 ORTHO05D007876 1.4e-112 411.4 750 37.5
Eucgr.J01260 Eucalyptus grandis HOM05D006280 ORTHO05D007876 1.8e-112 411.0 698 41.1
Dinv14267 Davidia involucrata HOM05D006280 ORTHO05D007876 3.1e-112 410.2 471 52.2
THA.LOC104817627 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 1.3e-110 404.8 710 39.9
ClCG09G004310 Citrullus lanatus HOM05D006280 ORTHO05D007876 1.7e-110 404.4 747 38.8
Prupe.2G009900 Prunus persica HOM05D006280 ORTHO05D007876 1.7e-110 404.4 696 41.7
HanXRQChr16g0519571 Helianthus annuus HOM05D006280 ORTHO05D007876 2.7e-108 397.1 690 39.4
THA.LOC104802360 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 8.0e-108 395.6 717 39.1
Aa31LG10G7200 Aethionema arabicum HOM05D006280 ORTHO05D007876 5.7e-106 389.4 685 39.1
Sed0005202 Sechium edule HOM05D006280 ORTHO05D007876 6.3e-105 386.0 702 39.7
AUR62028915 Chenopodium quinoa HOM05D006280 ORTHO05D007876 4.1e-104 383.3 693 37.8
FAN03G0134 Fragaria x ananassa HOM05D006280 ORTHO05D007876 1.3e-102 378.3 711 39.4
Manes.10G146200 Manihot esculenta HOM05D006280 ORTHO05D007876 1.3e-102 378.3 702 41.0
Carub.0005s1845 Capsella rubella HOM05D006280 ORTHO05D007876 5.0e-102 376.3 688 40.6
GSVIVG01032060001 Vitis vinifera HOM05D006280 ORTHO05D007876 5.5e-101 372.9 702 38.0
Sed0013445 Sechium edule HOM05D006280 ORTHO05D007876 2.3e-99 367.5 706 36.8
CANSAT01G2414 Cannabis sativa HOM05D006280 ORTHO05D007876 3.0e-99 367.1 703 38.5
QL04p005267 Quercus lobata HOM05D006280 ORTHO05D007876 1.1e-96 358.6 629 41.3
Sabra09G0047500 Salix brachista HOM05D006280 ORTHO05D007876 3.1e-96 357.1 686 39.5
Potri.009G064200 Populus trichocarpa HOM05D006280 ORTHO05D007876 2.0e-95 354.4 642 40.8
Dinv09375 Davidia involucrata HOM05D006280 ORTHO05D007876 7.7e-95 352.4 313 59.7
COL.COLO4_23913 Corchorus olitorius HOM05D006280 ORTHO05D008652 1.3e-94 351.7 661 38.9
AL5G32680 Arabidopsis lyrata HOM05D006280 ORTHO05D007876 1.5e-93 348.2 693 38.2
Sp5g10170 Schrenkiella parvula HOM05D006280 ORTHO05D007876 5.5e-93 346.3 685 37.5
FvH4_7g00721 Fragaria vesca HOM05D006280 ORTHO05D007876 9.5e-93 345.5 691 38.1
Dinv09374 Davidia involucrata HOM05D006280 ORTHO05D007876 1.2e-92 345.1 365 56.2
Rhsim01G0130600 Rhododendron simsii HOM05D006280 ORTHO05D007876 2.8e-92 344.0 477 48.8
AUR62005634 Chenopodium quinoa HOM05D006280 ORTHO05D007876 4.7e-92 343.2 653 36.8
MD07G1006900 Malus domestica HOM05D006280 ORTHO05D007876 4.0e-91 340.1 517 44.9
FAN10G1835 Fragaria x ananassa HOM05D006280 ORTHO05D007876 1.5e-90 338.2 688 37.8
Hma1.2p1_0845F.1_g227480 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 5.7e-90 336.3 553 43.2
AT3G52115 Arabidopsis thaliana HOM05D006280 ORTHO05D007876 1.7e-89 334.7 687 37.1
ECA234G4003 Erigeron canadensis HOM05D006280 ORTHO05D007876 1.7e-89 334.7 688 37.5
Nn2g15492 Nelumbo nucifera HOM05D006280 ORTHO05D007876 2.4e-88 330.9 719 35.5
CsaV3_7G031230 Cucumis sativus L. HOM05D006280 ORTHO05D007876 1.9e-85 321.2 540 41.9
Thhalv10010216m.g Eutrema salsugineum HOM05D006280 ORTHO05D007876 2.1e-84 317.8 695 36.5
BcaB02g08586 Brassica carinata HOM05D006280 ORTHO05D007876 3.7e-81 307.0 696 35.9
RcHm_v2.0_Chr1g0314941 Rosa chinensis HOM05D006280 ORTHO05D007876 4.9e-81 306.6 687 34.9
Aqoxy2G00116 Aquilegia oxysepala HOM05D006280 ORTHO05D007876 6.4e-81 306.2 694 32.9
FAN06G1370 Fragaria x ananassa HOM05D006280 ORTHO05D007876 6.4e-81 306.2 635 37.0
CARHR161840 Cardamine hirsuta HOM05D006280 ORTHO05D007876 1.4e-80 305.1 690 35.7
Lalb_Chr03g0033951 Lupinus albus HOM05D006280 ORTHO05D007876 1.3e-78 298.5 723 34.3
MBI01_g40597_MAGBIO Magnolia biondii HOM05D006280 ORTHO05D007876 5.2e-75 286.6 719 33.1
PSO447G0216 Papaver somniferum HOM05D006280 ORTHO05D007876 6.8e-75 286.2 692 33.2
A04p07250 Brassica napus HOM05D006280 ORTHO05D007876 4.9e-73 280.0 709 34.1
BraA04t16420Z Brassica rapa HOM05D006280 ORTHO05D007876 6.4e-73 279.6 709 34.1
FAN01G3121 Fragaria x ananassa HOM05D006280 ORTHO05D007876 2.7e-71 274.2 703 33.9
FAN01G1556 Fragaria x ananassa HOM05D006280 ORTHO05D007876 1.7e-70 271.6 421 42.8
MSTRG.5009 Avicennia marina HOM05D006280 ORTHO05D007876 3.0e-70 270.8 373 45.6
BcaC02g09279 Brassica carinata HOM05D006280 ORTHO05D007876 3.0e-70 270.8 682 34.9
C04p40810 Brassica napus HOM05D006280 ORTHO05D007876 3.0e-70 270.8 682 34.9
BolC4t25665H Brassica oleracea HOM05D006280 ORTHO05D007876 3.0e-70 270.8 682 34.9
PSO210G6454 Papaver somniferum HOM05D006280 ORTHO05D007876 2.3e-67 261.2 322 47.8
Glyma.12G238500 Glycine max HOM05D006280 ORTHO05D007876 5.8e-66 256.5 423 41.6
Ca_23874_v3 Cicer arietinum L. HOM05D006280 ORTHO05D007876 1.7e-65 255.0 499 38.9
TAR636G0096 Trochodendron aralioides HOM05D006280 ORTHO05D007876 6.4e-65 253.1 255 54.9
Lj3g0014839 Lotus japonicus HOM05D006280 ORTHO05D007876 8.3e-65 252.7 751 31.2
arahy.Tifrunner.gnm1.ann1.0Y513H Arachis hypogaea HOM05D006280 ORTHO05D007876 2.4e-64 251.1 306 48.7
Rhsim01G0130700 Rhododendron simsii HOM05D006280 ORTHO05D007876 5.4e-64 250.0 211 63.0
TPR.G21742 Trifolium pratense HOM05D006280 ORTHO05D007876 3.5e-63 247.3 420 39.5
Zm00001eb388310 Zea mays HOM05D006280 ORTHO05D007876 6.0e-63 246.5 725 32.7
Os06g0613400 Oryza sativa ssp. japonica HOM05D006280 ORTHO05D007876 3.0e-62 244.2 715 33.0
VMungo1127G1733 Vigna mungo HOM05D006280 ORTHO05D007876 3.9e-62 243.8 421 40.1
arahy.Tifrunner.gnm1.ann1.JHR7K6 Arachis hypogaea HOM05D006280 ORTHO05D007876 8.9e-59 232.6 683 33.2
Psat4g148560 Pisum sativum HOM05D006280 ORTHO05D007876 1.5e-58 231.9 690 32.2
Glyma.13G204200 Glycine max HOM05D006280 ORTHO05D007876 1.3e-57 228.8 246 52.8
vmacro21180 Vaccinium macrocarpon HOM05D006280 ORTHO05D007876 3.8e-57 227.3 480 38.8
unitig_8.g3859 Utricularia gibba HOM05D006280 ORTHO05D007876 8.4e-57 226.1 512 37.3
Medtr8g036940 Medicago truncatula HOM05D006280 ORTHO05D007876 3.3e-53 214.2 445 37.1
Phvul.011G212200 Phaseolus vulgaris HOM05D006280 ORTHO05D007876 2.4e-51 208.0 401 39.2
ATR0824G264 Amborella trichopoda HOM05D006280 ORTHO05D007876 5.8e-50 203.4 723 31.4
CDE04G2764 Ceratophyllum demersum HOM05D006280 ORTHO05D007876 9.9e-50 202.6 300 42.7
Dinv14268 Davidia involucrata HOM05D006280 ORTHO05D007876 6.6e-46 189.9 129 73.6
Hma1.2p1_0312F.1_g121350 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 6.2e-44 183.3 201 52.7
vmacro21179 Vaccinium macrocarpon HOM05D006280 ORTHO05D007876 9.9e-42 176.0 134 66.4
TAR636G3118 Trochodendron aralioides HOM05D006280 ORTHO05D007876 7.4e-37 159.8 340 38.5
DCAR_006240 Daucus carota HOM05D006280 ORTHO05D007876 8.1e-36 156.4 213 48.4
SEGI_32119 Sequoiadendron giganteum HOM05D006280 ORTHO05D007876 6.0e-31 140.2 754 25.1
Manes.07G004300 Manihot esculenta HOM05D006280 ORTHO05D007876 2.3e-30 138.3 357 32.5
unitig_8.g3860 Utricularia gibba HOM05D006280 ORTHO05D007876 6.9e-27 126.7 178 45.5
AagrBONN_evm.TU.Sc2ySwM_117.1753 Anthoceros agrestis HOM05D006280 ORTHO05D007876 2.1e-23 115.2 82 63.4
SMO196G0201 Selaginella moellendorffii HOM05D006280 ORTHO05D007876 8.7e-22 109.8 343 31.2
QL04p005379 Quercus lobata HOM05D000011 ORTHO05D007876 2.5e-21 108.2 251 36.7
Pp3c16_2140 Physcomitrium patens HOM05D006280 ORTHO05D007876 5.9e-18 97.1 327 33.0
QL04p005302 Quercus lobata HOM05D006280 ORTHO05D007876 1.9e-16 92.0 267 33.0
THA.LOC109117177 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 2.3e-14 85.1 223 31.8
PSO210G6643 Papaver somniferum HOM05D006280 ORTHO05D007876 9.7e-13 79.7 106 46.2
MCO05G132 Micromonas commoda HOM05D006280 ORTHO05D007876 3.4e-10 71.2 78 43.6
Mapoly0001s0083 Marchantia polymorpha HOM05D006280 ORTHO05D007876 4.5e-10 70.9 763 21.8
CBR_g41780 Chara braunii HOM05D000019 ORTHO05D000048 7.9e-07 60.1 51 56.9


User provided reference genes

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