Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003358g0010 Nicotiana tabacum HOM05D001969 ORTHO05D009003 7.9e-58 227.3 146 100.0
Nitab4.5_0002260g0270 Nicotiana tabacum HOM05D001969 ORTHO05D009003 1.1e-54 216.9 146 95.9
Peaxi162Scf00423g00066 Petunia axillaris HOM05D001969 ORTHO05D009003 8.2e-47 190.7 143 84.6
Solyc07g064840.3 Solanum lycopersicum HOM05D001969 ORTHO05D009003 6.9e-46 187.6 146 84.2
Sopen07g033040 Solanum pennellii HOM05D001969 ORTHO05D009003 1.2e-45 186.8 146 83.6
PGSC0003DMG400022306 Solanum tuberosum HOM05D001969 ORTHO05D009003 3.4e-45 185.3 146 82.9
CAN.G1310.15 Capsicum annuum HOM05D001969 ORTHO05D009003 1.3e-44 183.3 146 84.9
CAN.G1720.5 Capsicum annuum HOM05D001969 ORTHO05D009003 1.6e-42 176.4 145 82.1
Nitab4.5_0006575g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 3.0e-41 172.2 146 79.5
Nitab4.5_0003069g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 5.1e-41 171.4 146 78.8
DCAR_011200 Daucus carota HOM05D001969 ORTHO05D009003 5.3e-38 161.4 143 54.5
CSS0025708 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D009003 3.8e-36 155.2 140 72.9
TAR627G0582 Trochodendron aralioides HOM05D001969 ORTHO05D009003 1.9e-35 152.9 148 73.6
TAR627G0343 Trochodendron aralioides HOM05D001969 ORTHO05D009003 4.2e-35 151.8 148 73.0
HanXRQChr09g0274351 Helianthus annuus HOM05D001969 ORTHO05D009003 2.7e-34 149.1 137 73.0
Cc11_g01770 Coffea canephora HOM05D001969 ORTHO05D009003 3.6e-34 148.7 144 72.2
Cc11_g01780 Coffea canephora HOM05D001969 ORTHO05D009003 4.6e-34 148.3 137 74.5
HanXRQChr11g0350221 Helianthus annuus HOM05D001969 ORTHO05D009003 1.0e-33 147.1 137 72.3
TAR629G1647 Trochodendron aralioides HOM05D001969 ORTHO05D009003 1.0e-33 147.1 148 71.6
Lsat_1_v5_gn_3_137700 Lactuca sativa HOM05D001969 ORTHO05D009003 1.4e-33 146.7 130 65.4
Nn1g03931 Nelumbo nucifera HOM05D001969 ORTHO05D009003 1.4e-33 146.7 148 70.3
vmacro09267 Vaccinium macrocarpon HOM05D001969 ORTHO05D009003 3.0e-33 145.6 130 73.8
CANSAT78G0375 Cannabis sativa HOM05D001969 ORTHO05D003463 6.7e-33 144.4 138 70.3
ECA236G1367 Erigeron canadensis HOM05D001969 ORTHO05D009003 8.8e-33 144.1 137 67.2
ECA233G3782 Erigeron canadensis HOM05D001969 ORTHO05D009003 3.3e-32 142.1 137 66.4
Nn1g06730 Nelumbo nucifera HOM05D001969 ORTHO05D009003 3.3e-32 142.1 144 61.8
Aqoxy6G02660 Aquilegia oxysepala HOM05D001969 ORTHO05D009003 4.3e-32 141.7 148 69.6
HanXRQChr06g0167021 Helianthus annuus HOM05D001969 ORTHO05D009003 4.3e-32 141.7 137 70.1
Thecc.02G172900 Theobroma cacao HOM05D001969 ORTHO05D009003 5.7e-32 141.4 135 72.6
COL.COLO4_13690 Corchorus olitorius HOM05D001969 ORTHO05D009003 7.4e-32 141.0 135 72.6
Atru.chr6.3054 Acer truncatum HOM05D001969 ORTHO05D009003 1.3e-31 140.2 140 68.6
Oeu047331.1 Olea europaea HOM05D001969 ORTHO05D009003 1.3e-31 140.2 135 73.3
MSTRG.23988 Avicennia marina HOM05D001969 ORTHO05D009003 1.7e-31 139.8 140 69.3
Dinv23700 Davidia involucrata HOM05D001969 ORTHO05D009003 2.2e-31 139.4 132 68.2
Glyma.09G257600 Glycine max HOM05D001969 ORTHO05D009003 2.2e-31 139.4 130 73.1
SalBow7G2523 Salvia bowleyana HOM05D001969 ORTHO05D009003 2.8e-31 139.0 140 67.9
QL08p048209 Quercus lobata HOM05D001969 ORTHO05D009003 3.7e-31 138.7 129 72.1
Duzib248G0251 Durio zibethinus HOM05D001969 ORTHO05D009003 4.8e-31 138.3 135 72.6
Rhsim04G0021700 Rhododendron simsii HOM05D001969 ORTHO05D009003 4.8e-31 138.3 130 73.8
SGA_v2.0_scaffold135G34841 Striga asiatica HOM05D001969 ORTHO05D009003 4.8e-31 138.3 130 70.0
SGA_v2.0_scaffold3G01553 Striga asiatica HOM05D001969 ORTHO05D009003 4.8e-31 138.3 130 70.0
Lju41E32T0 Lonicera japonica HOM05D001969 ORTHO05D009003 6.3e-31 137.9 88 68.2
VMungo1127G0255 Vigna mungo HOM05D001969 ORTHO05D009003 6.3e-31 137.9 130 71.5
Glyma.18G235000 Glycine max HOM05D001969 ORTHO05D009003 1.4e-30 136.7 130 72.3
Potri.013G145800 Populus trichocarpa HOM05D001969 ORTHO05D009003 1.4e-30 136.7 142 69.0
CANSAT21G1059 Cannabis sativa HOM05D001969 ORTHO05D009003 2.4e-30 136.0 138 68.8
Phvul.011G177800 Phaseolus vulgaris HOM05D001969 ORTHO05D009003 2.4e-30 136.0 130 70.8
SalBow1G0343 Salvia bowleyana HOM05D001969 ORTHO05D009003 2.4e-30 136.0 132 69.7
SalBow7G4035 Salvia bowleyana HOM05D001969 ORTHO05D009003 2.4e-30 136.0 132 69.7
Migut.H00150 Erythranthe guttata HOM05D001969 ORTHO05D009003 3.1e-30 135.6 133 66.9
Gohir.A03G159600 Gossypium hirsutum HOM05D001969 ORTHO05D009003 3.1e-30 135.6 135 71.1
Ciclev10017445m.g Citrus clementina HOM05D001969 ORTHO05D003463 4.1e-30 135.2 134 59.0
Gohir.D02G182700 Gossypium hirsutum HOM05D001969 ORTHO05D009003 5.3e-30 134.8 135 71.1
MBI04_g38761_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 6.9e-30 134.4 143 69.9
MBI06_g08467_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 7.7e-29 131.0 144 66.7
RcHm_v2.0_Chr2g0127151 Rosa chinensis HOM05D001969 ORTHO05D009003 7.7e-29 131.0 130 53.1
Sed0009336 Sechium edule HOM05D001969 ORTHO05D009003 1.0e-28 130.6 139 66.9
EL10Ac3g05654 Beta vulgaris HOM05D001969 ORTHO05D003463 3.8e-28 128.6 144 67.4
Actinidia39674 Actinidia chinensis HOM05D001969 ORTHO05D003463 5.0e-28 128.3 135 63.7
Cfa003704 Carpinus fangiana HOM05D001969 ORTHO05D009003 5.0e-28 128.3 137 68.6
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 5.0e-28 128.3 129 72.9
PGR142G0421 Punica granatum HOM05D001969 ORTHO05D003463 5.0e-28 128.3 128 71.9
TWI18G1087 Tripterygium wilfordii HOM05D001969 ORTHO05D009003 8.5e-28 127.5 140 55.0
Actinidia39300 Actinidia chinensis HOM05D001969 ORTHO05D009003 2.5e-27 125.9 137 65.7
GSVIVG01030575001 Vitis vinifera HOM05D001969 ORTHO05D009003 2.5e-27 125.9 122 71.3
Lsat_1_v5_gn_2_3941 Lactuca sativa HOM05D001969 ORTHO05D009003 3.2e-27 125.6 125 48.0
Lalb_Chr19g0135421 Lupinus albus HOM05D001969 ORTHO05D009003 3.2e-27 125.6 130 66.9
unitig_748.g8143 Utricularia gibba HOM05D001969 ORTHO05D009003 2.1e-26 122.9 128 66.4
AUR62029451 Chenopodium quinoa HOM05D001969 ORTHO05D009003 4.7e-26 121.7 129 63.6
Lj3g0006045 Lotus japonicus HOM05D001969 ORTHO05D009003 4.7e-26 121.7 130 65.4
Medtr4g065010 Medicago truncatula HOM05D001969 ORTHO05D009003 6.1e-26 121.3 132 66.7
SEGI_26592 Sequoiadendron giganteum HOM05D001969 ORTHO05D009003 6.1e-26 121.3 133 61.7
MD09G1092600 Malus domestica HOM05D001969 ORTHO05D009003 7.9e-26 120.9 139 63.3
Manes.13G150950 Manihot esculenta HOM05D001969 ORTHO05D009003 1.0e-25 120.6 83 66.3
Psat7g197120 Pisum sativum HOM05D001969 ORTHO05D009003 1.0e-25 120.6 127 67.7
ATR1001G005 Amborella trichopoda HOM05D001969 ORTHO05D009003 1.4e-25 120.2 139 61.9
CiPaw.16G086600 Carya illinoinensis HOM05D001969 ORTHO05D009003 3.0e-25 119.0 128 71.1
TPR.G21647 Trifolium pratense HOM05D001969 ORTHO05D009003 3.0e-25 119.0 127 67.7
Ca_20693_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 5.1e-25 118.2 127 66.1
Ca_30106_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 5.1e-25 118.2 127 66.1
MD17G1082700 Malus domestica HOM05D001969 ORTHO05D009003 6.7e-25 117.9 130 66.9
Lj2g0006312 Lotus japonicus HOM05D001969 ORTHO05D009003 1.5e-24 116.7 130 63.8
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 2.0e-24 116.3 121 71.1
FAN05G0495 Fragaria x ananassa HOM05D001969 ORTHO05D003463 2.6e-24 115.9 80 58.8
Gorai.005G205100 Gossypium raimondii HOM05D001969 ORTHO05D003463 3.3e-24 115.5 121 72.7
Medtr4g046043 Medicago truncatula HOM05D001969 ORTHO05D009003 4.4e-24 115.2 127 63.8
Mapoly0071s0092 Marchantia polymorpha HOM05D001969 ORTHO05D009003 2.2e-23 112.8 137 60.6
Sc03g0002190 Simmondsia chinensis HOM05D001969 ORTHO05D009003 4.8e-23 111.7 137 54.0
Eucgr.K00935 Eucalyptus grandis HOM05D001969 ORTHO05D009003 6.3e-23 111.3 133 59.4
Sed0013701 Sechium edule HOM05D001969 ORTHO05D009003 2.4e-22 109.4 80 53.8
TPR.G31971 Trifolium pratense HOM05D001669 ORTHO05D006496 1.2e-21 107.1 82 53.7
Zm00001eb194600 Zea mays HOM05D001969 ORTHO05D009003 2.6e-21 105.9 135 57.8
Zm00001eb225500 Zea mays HOM05D001969 ORTHO05D009003 2.6e-21 105.9 135 57.8
Manes.06G013500 Manihot esculenta HOM05D001969 ORTHO05D009003 4.5e-21 105.1 116 48.3
Zm00001eb072880 Zea mays HOM05D001969 ORTHO05D009003 4.5e-21 105.1 126 59.5
Zm00001eb194610 Zea mays HOM05D001969 ORTHO05D009003 4.5e-21 105.1 135 57.0
THA.LOC104811178 Tarenaya hassleriana HOM05D001969 ORTHO05D009003 5.9e-21 104.8 136 39.7
Zm00001eb414500 Zea mays HOM05D001969 ORTHO05D009003 5.9e-21 104.8 135 57.0
CsaV3_6G012510 Cucumis sativus L. HOM05D001969 ORTHO05D003463 1.7e-20 103.2 113 69.9
Aa31LG9G15650 Aethionema arabicum HOM05D001969 ORTHO05D009003 2.9e-20 102.4 142 39.4
Zm00001eb350110 Zea mays HOM05D001969 ORTHO05D009003 5.0e-20 101.7 135 55.6
Hma1.2p1_0832F.1_g225700 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 1.1e-19 100.5 136 62.5
PSO384G2148 Papaver somniferum HOM05D001969 ORTHO05D009003 1.1e-19 100.5 131 58.8
Pp3c6_17280 Physcomitrium patens HOM05D001969 ORTHO05D009003 5.5e-19 98.2 143 54.5
Rhsim04G0065900 Rhododendron simsii HOM05D001969 ORTHO05D003463 5.5e-19 98.2 101 78.2
PSO339G1404 Papaver somniferum HOM05D001969 ORTHO05D009003 7.2e-19 97.8 135 56.3
HPP92_010084 Vanilla planifolia HOM05D001969 ORTHO05D009003 2.7e-18 95.9 133 56.4
HPP92_010093 Vanilla planifolia HOM05D001969 ORTHO05D009003 2.7e-18 95.9 133 56.4
Os07g0530300 Oryza sativa ssp. japonica HOM05D001969 ORTHO05D009003 3.6e-18 95.5 128 54.7
Cpa.g.sc17.168 Carica papaya HOM05D001969 ORTHO05D003463 1.8e-17 93.2 126 57.1
AL3G54010 Arabidopsis lyrata HOM05D001969 ORTHO05D009003 8.2e-15 84.3 132 42.4
PSO017G7338 Papaver somniferum HOM05D001969 ORTHO05D009003 8.2e-15 84.3 132 53.0
FAN02G3777 Fragaria x ananassa HOM05D001969 ORTHO05D009003 3.1e-14 82.4 96 60.4
Ah.07g207260 Amaranthus hybridus HOM05D001969 ORTHO05D003463 4.1e-14 82.0 118 50.8
SMO351G0323 Selaginella moellendorffii HOM05D001969 ORTHO05D009003 2.9e-12 75.9 133 46.6
PSO675G3991 Papaver somniferum HOM05D001969 ORTHO05D009003 2.5e-11 72.8 93 43.0
Zm00001eb414510 Zea mays HOM05D001969 ORTHO05D009003 7.2e-11 71.2 60 48.3
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 9.4e-11 70.9 119 34.5
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 9.4e-11 70.9 119 34.5
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 9.4e-11 70.9 119 34.5
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 1.6e-10 70.1 122 32.8
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 2.7e-10 69.3 121 33.1
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 2.7e-10 69.3 121 33.1
Thhalv10001991m.g Eutrema salsugineum HOM05D001969 ORTHO05D003463 2.3e-09 66.2 118 32.2
Cre02.g075550 Chlamydomonas reinhardtii HOM05D001969 ORTHO05D009003 1.2e-08 63.9 141 41.8
Eucgr.K00932 Eucalyptus grandis HOM05D001969 ORTHO05D009003 4.4e-08 62.0 58 48.3
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 3.7e-07 58.9 83 55.4
Aa31LG8G17650 Aethionema arabicum HOM05D001969 ORTHO05D003463 1.1e-06 57.4 110 30.0


User provided reference genes

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