Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003338g0080 Nicotiana tabacum HOM05D006435 ORTHO05D008262 1.9e-170 602.4 302 100.0
Sopen08g022120 Solanum pennellii HOM05D006435 ORTHO05D008262 1.4e-125 453.4 302 81.1
Solyc08g068270.3 Solanum lycopersicum HOM05D006435 ORTHO05D008262 1.5e-124 449.9 302 81.5
PGSC0003DMG400014515 Solanum tuberosum HOM05D006435 ORTHO05D008262 1.2e-121 440.3 306 79.7
CAN.G797.1 Capsicum annuum HOM05D006435 ORTHO05D008262 5.1e-120 434.9 304 79.3
Cc00_g17690 Coffea canephora HOM05D006435 ORTHO05D008262 5.3e-101 371.7 276 71.0
Hma1.2p1_0140F.1_g063520 Hydrangea macrophylla HOM05D006435 ORTHO05D008262 2.6e-100 369.4 306 66.3
Nitab4.5_0000052g0140 Nicotiana tabacum HOM05D006435 ORTHO05D008262 3.5e-100 369.0 318 68.9
CSS0040195 Camellia sinensis var. sinensis HOM05D006435 ORTHO05D008262 8.5e-99 364.4 299 66.2
Dinv30253 Davidia involucrata HOM05D006435 ORTHO05D004219 2.2e-94 349.7 289 65.7
Rhsim02G0182200 Rhododendron simsii HOM05D006435 ORTHO05D008262 2.2e-94 349.7 289 63.7
vmacro11085 Vaccinium macrocarpon HOM05D006435 ORTHO05D008262 2.2e-94 349.7 303 61.7
QL12p026394 Quercus lobata HOM05D006435 ORTHO05D008262 8.3e-94 347.8 301 62.5
Lj8C603T5 Lonicera japonica HOM05D006435 ORTHO05D008262 1.1e-93 347.4 308 64.3
Actinidia31221 Actinidia chinensis HOM05D006435 ORTHO05D008262 1.8e-93 346.7 312 61.9
DCAR_007705 Daucus carota HOM05D006435 ORTHO05D008262 2.4e-93 346.3 208 79.3
GSVIVG01035670001 Vitis vinifera HOM05D006435 ORTHO05D008262 3.1e-93 345.9 278 64.7
Sp2g21890 Schrenkiella parvula HOM05D006435 ORTHO05D008262 4.1e-93 345.5 313 61.0
arahy.Tifrunner.gnm1.ann1.463B8J Arachis hypogaea HOM05D006435 ORTHO05D008262 5.4e-93 345.1 200 82.0
arahy.Tifrunner.gnm1.ann1.W16L9Q Arachis hypogaea HOM05D006435 ORTHO05D008262 9.1e-93 344.4 200 82.0
CiPaw.07G207200 Carya illinoinensis HOM05D006435 ORTHO05D008262 9.1e-93 344.4 292 63.0
AL6G37530 Arabidopsis lyrata HOM05D006435 ORTHO05D008262 1.2e-92 344.0 295 62.4
BcaC03g17897 Brassica carinata HOM05D006435 ORTHO05D008262 2.0e-92 343.2 305 60.0
TWI32G0701 Tripterygium wilfordii HOM05D006435 ORTHO05D008262 2.7e-92 342.8 206 80.1
C02p59390 Brassica napus HOM05D006435 ORTHO05D008262 3.5e-92 342.4 305 60.0
Thecc.09G039800 Theobroma cacao HOM05D006435 ORTHO05D008262 3.5e-92 342.4 312 60.9
Carub.0006s2947 Capsella rubella HOM05D006435 ORTHO05D008262 5.9e-92 341.7 293 63.1
THA.LOC104815054 Tarenaya hassleriana HOM05D006435 ORTHO05D008262 7.7e-92 341.3 199 80.9
BraA02t08928Z Brassica rapa HOM05D006435 ORTHO05D008262 1.7e-91 340.1 314 60.2
CARHR187680 Cardamine hirsuta HOM05D006435 ORTHO05D008262 2.2e-91 339.7 290 63.1
Prupe.1G452600 Prunus persica HOM05D006435 ORTHO05D008262 2.9e-91 339.3 292 63.7
Aa31LG11G4730 Aethionema arabicum HOM05D006435 ORTHO05D008262 5.0e-91 338.6 314 58.6
Lalb_Chr22g0360991 Lupinus albus HOM05D006435 ORTHO05D008262 6.5e-91 338.2 204 81.4
SGA_v2.0_scaffold280G46829 Striga asiatica HOM05D006435 ORTHO05D008262 6.5e-91 338.2 281 65.8
Oeu063249.1 Olea europaea HOM05D006435 ORTHO05D008262 8.5e-91 337.8 283 65.7
Hund19545 Selenicereus undatus HOM05D006435 ORTHO05D008262 8.5e-91 337.8 280 63.6
Cfa013344 Carpinus fangiana HOM05D006435 ORTHO05D008262 1.1e-90 337.4 299 61.2
BcaB07g29986 Brassica carinata HOM05D006435 ORTHO05D008262 1.5e-90 337.0 315 60.3
MELO3C003582.2 Cucumis melo HOM05D006435 ORTHO05D008262 3.2e-90 335.9 307 59.9
Lsat_1_v5_gn_6_10980 Lactuca sativa HOM05D006435 ORTHO05D008262 4.2e-90 335.5 296 63.9
Sed0025420 Sechium edule HOM05D006435 ORTHO05D008262 4.2e-90 335.5 204 79.4
CsaV3_3G047410 Cucumis sativus L. HOM05D006435 ORTHO05D008262 5.5e-90 335.1 204 79.9
Duzib187G0700 Durio zibethinus HOM05D006435 ORTHO05D008262 5.5e-90 335.1 307 60.6
Ciclev10009372m.g Citrus clementina HOM05D006435 ORTHO05D008262 7.2e-90 334.7 209 76.6
SalBow4G2069 Salvia bowleyana HOM05D006435 ORTHO05D008262 9.4e-90 334.3 268 65.7
Cpa.g.sc78.80 Carica papaya HOM05D006435 ORTHO05D008262 1.2e-89 334.0 275 64.7
Potri.018G037300 Populus trichocarpa HOM05D006435 ORTHO05D008262 1.2e-89 334.0 272 64.0
Aqoxy7G01634 Aquilegia oxysepala HOM05D006435 ORTHO05D008262 2.1e-89 333.2 306 61.4
RcHm_v2.0_Chr6g0305751 Rosa chinensis HOM05D006435 ORTHO05D008262 2.1e-89 333.2 288 61.5
Thhalv10004692m.g Eutrema salsugineum HOM05D006435 ORTHO05D008262 6.1e-89 331.6 308 59.7
Glyma.17G190400 Glycine max HOM05D006435 ORTHO05D008262 8.0e-89 331.3 203 79.3
FAN27G2865 Fragaria x ananassa HOM05D006435 ORTHO05D008262 1.0e-88 330.9 209 75.6
CANSAT80G2129 Cannabis sativa HOM05D006435 ORTHO05D008262 1.8e-88 330.1 198 78.3
FvH4_2g36120 Fragaria vesca HOM05D006435 ORTHO05D008262 1.8e-88 330.1 286 61.5
HanXRQChr02g0048091 Helianthus annuus HOM05D006435 ORTHO05D008262 3.0e-88 329.3 289 61.6
Manes.03G062800 Manihot esculenta HOM05D006435 ORTHO05D008262 3.0e-88 329.3 308 60.4
AUR62009330 Chenopodium quinoa HOM05D006435 ORTHO05D008262 4.0e-88 328.9 242 69.8
Gohir.D05G050300 Gossypium hirsutum HOM05D006435 ORTHO05D008262 4.0e-88 328.9 308 58.8
MBI01_g28042_MAGBIO Magnolia biondii HOM05D006435 ORTHO05D008262 4.0e-88 328.9 294 60.5
Ah.16g105260 Amaranthus hybridus HOM05D006435 ORTHO05D008262 2.0e-87 326.6 300 61.0
AUR62023016 Chenopodium quinoa HOM05D006435 ORTHO05D008262 2.6e-87 326.2 199 80.4
MSTRG.11716 Avicennia marina HOM05D006435 ORTHO05D008262 3.4e-87 325.9 195 82.6
VMungo0647G0379 Vigna mungo HOM05D006435 ORTHO05D008262 3.4e-87 325.9 198 78.8
MD15G1097700 Malus domestica HOM05D006435 ORTHO05D008262 5.7e-87 325.1 296 59.5
Nn2g11721 Nelumbo nucifera HOM05D006435 ORTHO05D008262 5.7e-87 325.1 296 60.8
Gohir.A05G048400 Gossypium hirsutum HOM05D006435 ORTHO05D008262 7.5e-87 324.7 196 80.1
Atru.chr7.2160 Acer truncatum HOM05D006435 ORTHO05D008262 1.3e-86 323.9 301 60.5
Eucgr.C01580 Eucalyptus grandis HOM05D006435 ORTHO05D008262 1.7e-86 323.6 201 77.1
EL10Ac2g04073 Beta vulgaris HOM05D006435 ORTHO05D008262 2.2e-86 323.2 206 75.7
HPP92_001799 Vanilla planifolia HOM05D006435 ORTHO05D008262 2.2e-86 323.2 198 78.8
Gorai.009G051800 Gossypium raimondii HOM05D006435 ORTHO05D008262 4.9e-86 322.0 196 79.6
ATR0315G035 Amborella trichopoda HOM05D006435 ORTHO05D008262 1.8e-85 320.1 266 64.7
Lj1g0009240 Lotus japonicus HOM05D006435 ORTHO05D008262 1.8e-85 320.1 203 75.9
PSO782G5114 Papaver somniferum HOM05D006435 ORTHO05D008262 9.1e-85 317.8 204 75.5
CDE05G2477 Ceratophyllum demersum HOM05D006435 ORTHO05D008262 1.2e-84 317.4 261 63.6
Medtr1g008300 Medicago truncatula HOM05D006435 ORTHO05D008262 1.2e-84 317.4 199 76.4
Phvul.001G078600 Phaseolus vulgaris HOM05D006435 ORTHO05D008262 2.0e-84 316.6 194 79.4
TPR.G12017 Trifolium pratense HOM05D006435 ORTHO05D008262 2.0e-84 316.6 202 75.2
PSO832G3386 Papaver somniferum HOM05D006435 ORTHO05D008262 4.5e-84 315.5 204 75.0
ECA233G4084 Erigeron canadensis HOM05D006435 ORTHO05D008262 7.7e-84 314.7 226 72.1
Migut.A00245 Erythranthe guttata HOM05D006435 ORTHO05D008262 3.8e-83 312.4 299 58.9
unitig_0.g2807 Utricularia gibba HOM05D006435 ORTHO05D008262 1.9e-82 310.1 217 70.5
FAN20G0337 Fragaria x ananassa HOM05D006435 ORTHO05D008262 4.2e-82 308.9 209 73.2
VMungo1215G1854 Vigna mungo HOM05D006435 ORTHO05D008262 6.1e-81 305.1 182 80.8
SEGI_13627 Sequoiadendron giganteum HOM05D006435 ORTHO05D008262 2.2e-78 296.6 191 77.0
Sc09g0009090 Simmondsia chinensis HOM05D006435 ORTHO05D008262 6.4e-78 295.0 208 69.2
Solyc10g012245.1 Solanum lycopersicum HOM05D006435 ORTHO05D008262 5.4e-77 292.0 221 71.9
Haze_21849 Corylus avellana HOM05D006435 ORTHO05D008262 4.3e-74 282.3 168 82.1
Zm00001eb350490 Zea mays HOM05D006435 ORTHO05D008262 1.2e-73 280.8 209 67.5
COL.COLO4_18696 Corchorus olitorius HOM05D006435 ORTHO05D008262 1.6e-73 280.4 298 56.4
TAR624G0864 Trochodendron aralioides HOM05D006435 ORTHO05D008262 6.2e-73 278.5 166 81.9
Os05g0220600 Oryza sativa ssp. japonica HOM05D006435 ORTHO05D008262 2.3e-72 276.6 189 70.4
Pp3c15_3110 Physcomitrium patens HOM05D006435 ORTHO05D008262 2.2e-70 270.0 279 53.8
PGR031G0325 Punica granatum HOM05D006435 ORTHO05D008262 2.2e-70 270.0 150 83.3
AagrBONN_evm.TU.Sc2ySwM_117.700 Anthoceros agrestis HOM05D006435 ORTHO05D008262 1.6e-68 263.8 177 71.8
Eucgr.L02138 Eucalyptus grandis HOM05D006435 ORTHO05D008262 7.8e-68 261.5 201 66.7
AL6G37520 Arabidopsis lyrata HOM05D006435 ORTHO05D008262 1.0e-67 261.2 202 66.3
SMO116G0425 Selaginella moellendorffii HOM05D006435 ORTHO05D008262 3.9e-67 259.2 198 63.1
Mapoly0109s0030 Marchantia polymorpha HOM05D006435 ORTHO05D008262 3.3e-66 256.1 194 65.5
Psat6g034280 Pisum sativum HOM05D006435 ORTHO05D008262 2.3e-64 250.0 153 78.4
Peaxi162Scf00523g00529 Petunia axillaris HOM05D006435 ORTHO05D008262 9.8e-63 244.6 141 91.5
AT5G25640 Arabidopsis thaliana HOM05D006435 ORTHO05D008262 1.4e-61 240.7 290 48.3
Carub.0006s2351 Capsella rubella HOM05D006435 ORTHO05D008262 5.4e-61 238.8 294 48.3
ClCG11G014010 Citrullus lanatus HOM05D006435 ORTHO05D008262 3.4e-55 219.5 132 81.8
Ciclev10010273m.g Citrus clementina HOM05D006435 ORTHO05D008262 4.4e-55 219.2 158 70.3
Peaxi162Scf00523g00528 Petunia axillaris HOM05D006435 ORTHO05D008262 2.9e-54 216.5 168 71.4
Ca_12811_v3 Cicer arietinum L. HOM05D006435 ORTHO05D008262 2.3e-51 206.8 139 75.5
MBI01_g28043_MAGBIO Magnolia biondii HOM05D006435 ORTHO05D008262 2.1e-49 200.3 203 55.7
Glyma.14G141900 Glycine max HOM05D006435 ORTHO05D008262 2.1e-44 183.7 110 84.5
PSO782G5630 Papaver somniferum HOM05D006435 ORTHO05D008262 5.1e-43 179.1 188 49.5
Sabra18G0038100 Salix brachista HOM05D006435 ORTHO05D008262 1.3e-38 164.5 107 75.7
PRCOL_00005434 Prasinoderma coloniale HOM05D006435 ORTHO05D008262 4.2e-37 159.5 181 44.8
PSO782G2728 Papaver somniferum HOM05D006435 ORTHO05D008262 7.9e-36 155.2 205 42.9
Cre16.g664801 Chlamydomonas reinhardtii HOM05D006435 ORTHO05D008262 1.7e-35 154.1 191 44.5
Solyc10g012295.1 Solanum lycopersicum HOM05D006435 ORTHO05D008262 3.4e-31 139.8 207 46.9
A02p39610 Brassica napus HOM05D006435 ORTHO05D008262 3.2e-29 133.3 149 50.3
FAN15G2703 Fragaria x ananassa HOM05D006435 ORTHO05D008262 6.0e-28 129.0 151 47.0
PSO832G3154 Papaver somniferum HOM05D006435 ORTHO05D008262 4.8e-25 119.4 192 38.0
MD08G1118500 Malus domestica HOM05D006435 ORTHO05D008262 2.3e-19 100.5 73 67.1
MBI01_g46977_MAGBIO Magnolia biondii HOM05D006435 ORTHO05D008262 8.2e-17 92.0 76 65.8
Cre12.g546200 Chlamydomonas reinhardtii HOM05D006435 ORTHO05D146483 2.0e-07 60.8 187 27.8
Cre11.g467648 Chlamydomonas reinhardtii HOM05D006435 ORTHO05D143948 3.4e-07 60.1 90 33.3
ECA236G3352 Erigeron canadensis HOM05D000659 ORTHO05D000505 7.7e-07 58.9 177 31.1
Os04g0569300 Oryza sativa ssp. japonica HOM05D000659 ORTHO05D000505 7.7e-07 58.9 152 30.9
Gohir.D09G150900 Gossypium hirsutum HOM05D000659 ORTHO05D000505 1.0e-06 58.5 165 30.9
Gorai.006G172200 Gossypium raimondii HOM05D000659 ORTHO05D000505 1.0e-06 58.5 165 30.9
Potri.006G086300 Populus trichocarpa HOM05D000659 ORTHO05D000505 1.7e-06 57.8 143 30.1
AUR62009562 Chenopodium quinoa HOM05D000659 ORTHO05D000505 3.8e-06 56.6 152 30.9
Cc06_g02550 Coffea canephora HOM05D000659 ORTHO05D000505 3.8e-06 56.6 154 31.2
Gohir.A09G155400 Gossypium hirsutum HOM05D000659 ORTHO05D000505 3.8e-06 56.6 165 30.3
vmacro08649 Vaccinium macrocarpon HOM05D000659 ORTHO05D000505 3.8e-06 56.6 147 31.3
BcaB01g06352 Brassica carinata HOM05D000659 ORTHO05D000505 5.0e-06 56.2 154 32.5
AUR62001774 Chenopodium quinoa HOM05D000659 ORTHO05D000505 5.0e-06 56.2 152 30.9
Haze_21850 Corylus avellana HOM05D006435 ORTHO05D008262 5.0e-06 56.2 130 35.4
Potri.001G108700 Populus trichocarpa HOM05D000659 ORTHO05D000505 5.0e-06 56.2 173 29.5
Lalb_Chr19g0130981 Lupinus albus HOM05D000659 ORTHO05D000505 6.5e-06 55.8 150 29.3
PGR004G1090 Punica granatum HOM05D000659 ORTHO05D000505 6.5e-06 55.8 147 29.9
Rhsim04G0157700 Rhododendron simsii HOM05D000659 ORTHO05D000505 6.5e-06 55.8 147 31.3
Hund04948 Selenicereus undatus HOM05D000659 ORTHO05D000505 6.5e-06 55.8 171 29.2
Zm00001eb164560 Zea mays HOM05D000659 ORTHO05D000505 6.5e-06 55.8 167 28.7
Lalb_Chr03g0034381 Lupinus albus HOM05D000659 ORTHO05D000505 8.5e-06 55.5 150 30.0


User provided reference genes

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