Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003283g0050 Nicotiana tabacum HOM05D000163 ORTHO05D000219 3.0e-37 157.9 74 100.0
Nitab4.5_0006861g0020 Nicotiana tabacum HOM05D000163 ORTHO05D000219 2.0e-25 118.6 81 72.8
Sopen07g020010 Solanum pennellii HOM05D000163 ORTHO05D000219 1.1e-18 96.3 79 62.0
Peaxi162Scf00498g00431 Petunia axillaris HOM05D000163 ORTHO05D000219 2.4e-18 95.1 81 56.8
PGSC0003DMG400010710 Solanum tuberosum HOM05D000163 ORTHO05D000219 5.3e-18 94.0 79 60.8
CAN.G1583.8 Capsicum annuum HOM05D000163 ORTHO05D000219 2.6e-17 91.7 80 55.0
Solyc07g040940.3 Solanum lycopersicum HOM05D000163 ORTHO05D000219 3.4e-17 91.3 79 62.0
Solyc12g008990.2 Solanum lycopersicum HOM05D000163 ORTHO05D000219 1.7e-16 89.0 79 54.4
Nitab4.5_0002642g0130 Nicotiana tabacum HOM05D000163 ORTHO05D000219 3.8e-16 87.8 81 53.1
Potri.006G147000 Populus trichocarpa HOM05D000163 ORTHO05D000219 8.4e-16 86.7 80 52.5
Dinv42344 Davidia involucrata HOM05D000163 ORTHO05D000219 1.9e-15 85.5 79 53.2
Duzib150G0379 Durio zibethinus HOM05D000163 ORTHO05D000219 1.9e-15 85.5 79 51.9
Nitab4.5_0002642g0080 Nicotiana tabacum HOM05D000163 ORTHO05D000219 1.9e-15 85.5 79 53.2
Nitab4.5_0002824g0110 Nicotiana tabacum HOM05D000163 ORTHO05D000219 2.4e-15 85.1 81 51.9
Sopen12g003920 Solanum pennellii HOM05D000163 ORTHO05D000219 4.2e-15 84.3 79 51.9
Hma1.2p1_0169F.1_g074840 Hydrangea macrophylla HOM05D000163 ORTHO05D000219 7.1e-15 83.6 76 53.9
Oeu000308.1 Olea europaea HOM05D000163 ORTHO05D000219 7.1e-15 83.6 77 50.6
Rhsim05G0015100 Rhododendron simsii HOM05D000163 ORTHO05D000219 7.1e-15 83.6 79 49.4
RcHm_v2.0_Chr2g0093881 Rosa chinensis HOM05D000163 ORTHO05D000219 7.1e-15 83.6 78 50.0
Gohir.A06G073800 Gossypium hirsutum HOM05D000163 ORTHO05D000219 9.3e-15 83.2 79 50.6
Rhsim05G0015500 Rhododendron simsii HOM05D000163 ORTHO05D000219 1.2e-14 82.8 78 50.0
Prupe.7G205400 Prunus persica HOM05D000163 ORTHO05D000219 1.6e-14 82.4 79 46.8
Thecc.09G083900 Theobroma cacao HOM05D000163 ORTHO05D000219 1.6e-14 82.4 79 51.9
vmacro17143 Vaccinium macrocarpon HOM05D000163 ORTHO05D000219 2.7e-14 81.6 76 51.3
vmacro17210 Vaccinium macrocarpon HOM05D000163 ORTHO05D000219 2.7e-14 81.6 76 51.3
CSS0038639 Camellia sinensis var. sinensis HOM05D000163 ORTHO05D000219 3.5e-14 81.3 80 51.2
Gohir.D06G072700 Gossypium hirsutum HOM05D000163 ORTHO05D000219 3.5e-14 81.3 79 49.4
RcHm_v2.0_Chr2g0094001 Rosa chinensis HOM05D000163 ORTHO05D000219 3.5e-14 81.3 76 50.0
TPR.G697 Trifolium pratense HOM05D000163 ORTHO05D000219 3.5e-14 81.3 79 49.4
Medtr4g125930 Medicago truncatula HOM05D000163 ORTHO05D000219 6.0e-14 80.5 79 48.1
VMungo1215G0449 Vigna mungo HOM05D000163 ORTHO05D000219 6.0e-14 80.5 76 48.7
FvH4_1g07970 Fragaria vesca HOM05D000163 ORTHO05D000219 7.9e-14 80.1 78 47.4
Atru.chr7.1636 Acer truncatum HOM05D000163 ORTHO05D000219 1.0e-13 79.7 77 51.9
FAN19G2901 Fragaria x ananassa HOM05D000163 ORTHO05D000219 1.3e-13 79.3 78 47.4
Manes.03G036500 Manihot esculenta HOM05D000163 ORTHO05D000219 1.3e-13 79.3 80 51.2
Phvul.003G134500 Phaseolus vulgaris HOM05D000163 ORTHO05D000219 1.3e-13 79.3 76 47.4
TAR626G0653 Trochodendron aralioides HOM05D000163 ORTHO05D000219 1.8e-13 79.0 79 48.1
CiPaw.03G212000 Carya illinoinensis HOM05D000163 ORTHO05D000219 2.3e-13 78.6 83 44.6
SGA_v2.0_scaffold21G09421 Striga asiatica HOM05D000163 ORTHO05D000219 2.3e-13 78.6 73 53.4
Cfa003054 Carpinus fangiana HOM05D001717 ORTHO05D007217 3.0e-13 78.2 79 48.1
Haze_25943 Corylus avellana HOM05D000163 ORTHO05D000219 3.0e-13 78.2 79 48.1
CAN.G235.9 Capsicum annuum HOM05D000163 ORTHO05D000219 3.9e-13 77.8 72 58.3
FAN23G2704 Fragaria x ananassa HOM05D000163 ORTHO05D000219 5.1e-13 77.4 78 46.2
FAN26G0627 Fragaria x ananassa HOM05D000163 ORTHO05D000219 5.1e-13 77.4 78 46.2
FAN26G3256 Fragaria x ananassa HOM05D000163 ORTHO05D000219 5.1e-13 77.4 78 46.2
FAN28G0711 Fragaria x ananassa HOM05D000163 ORTHO05D000219 5.1e-13 77.4 78 46.2
Gorai.010G084700 Gossypium raimondii HOM05D000163 ORTHO05D000219 5.1e-13 77.4 79 46.8
AUR62029028 Chenopodium quinoa HOM05D000163 ORTHO05D000219 8.7e-13 76.6 83 47.0
AUR62033923 Chenopodium quinoa HOM05D000163 ORTHO05D000219 8.7e-13 76.6 83 47.0
Lalb_Chr12g0199901 Lupinus albus HOM05D000163 ORTHO05D000219 1.1e-12 76.3 67 53.7
GSVIVG01015162001 Vitis vinifera HOM05D000163 ORTHO05D000219 1.1e-12 76.3 75 50.7
Rhsim05G0015400 Rhododendron simsii HOM05D000163 ORTHO05D000219 1.5e-12 75.9 73 47.9
vmacro17148 Vaccinium macrocarpon HOM05D000163 ORTHO05D000219 1.5e-12 75.9 79 44.3
Glyma.17G052800 Glycine max HOM05D000163 ORTHO05D000219 1.9e-12 75.5 76 46.1
Ca_21294_v3 Cicer arietinum L. HOM05D000163 ORTHO05D000219 2.5e-12 75.1 76 47.4
CARHR109860 Cardamine hirsuta HOM05D000163 ORTHO05D000219 3.3e-12 74.7 76 46.1
Ciclev10007527m.g Citrus clementina HOM05D000163 ORTHO05D000219 3.3e-12 74.7 77 46.8
DCAR_010502 Daucus carota HOM05D000163 ORTHO05D000219 3.3e-12 74.7 80 43.8
HanXRQChr12g0354481 Helianthus annuus HOM05D000163 ORTHO05D000219 3.3e-12 74.7 75 49.3
QL02p061918 Quercus lobata HOM05D000163 ORTHO05D000219 3.3e-12 74.7 79 46.8
arahy.Tifrunner.gnm1.ann1.SWIT4Z Arachis hypogaea HOM05D000163 ORTHO05D000219 4.3e-12 74.3 70 51.4
EL10Ac8g19170 Beta vulgaris HOM05D000163 ORTHO05D000219 4.3e-12 74.3 83 47.0
vmacro17146 Vaccinium macrocarpon HOM05D000163 ORTHO05D000219 4.3e-12 74.3 79 45.6
Aa31LG8G16420 Aethionema arabicum HOM05D000163 ORTHO05D000219 5.6e-12 73.9 79 45.6
AT2G19410 Arabidopsis thaliana HOM05D000163 ORTHO05D000219 5.6e-12 73.9 79 45.6
Rhsim05G0016200 Rhododendron simsii HOM05D000163 ORTHO05D000219 5.6e-12 73.9 77 46.8
vmacro17214 Vaccinium macrocarpon HOM05D000163 ORTHO05D000219 5.6e-12 73.9 76 48.7
AL3G48910 Arabidopsis lyrata HOM05D000163 ORTHO05D000219 7.4e-12 73.6 79 44.3
Lj4g0012370 Lotus japonicus HOM05D000163 ORTHO05D000219 7.4e-12 73.6 76 47.4
PGR142G0319 Punica granatum HOM05D000163 ORTHO05D000219 7.4e-12 73.6 69 50.7
BolC7t40675H Brassica oleracea HOM05D000163 ORTHO05D000219 9.6e-12 73.2 82 43.9
Rhsim05G0015800 Rhododendron simsii HOM05D000163 ORTHO05D000219 9.6e-12 73.2 77 42.9
THA.LOC104803965 Tarenaya hassleriana HOM05D000163 ORTHO05D000219 9.6e-12 73.2 81 43.2
arahy.Tifrunner.gnm1.ann1.8Z631M Arachis hypogaea HOM05D000163 ORTHO05D000219 1.3e-11 72.8 70 50.0
Carub.0003s3370 Capsella rubella HOM05D000163 ORTHO05D000219 1.3e-11 72.8 79 43.0
Cc06_g11690 Coffea canephora HOM05D000163 ORTHO05D000219 1.6e-11 72.4 68 52.9
COL.COLO4_18164 Corchorus olitorius HOM05D000163 ORTHO05D000219 1.6e-11 72.4 44 68.2
Eucgr.C00853 Eucalyptus grandis HOM05D000163 ORTHO05D000219 1.6e-11 72.4 70 47.1
Rhsim05G0015600 Rhododendron simsii HOM05D000163 ORTHO05D000219 1.6e-11 72.4 77 44.2
A07p01350 Brassica napus HOM05D000163 ORTHO05D000219 2.1e-11 72.0 82 43.9
BraA07t27928Z Brassica rapa HOM05D000163 ORTHO05D000219 2.1e-11 72.0 82 43.9
BcaC06g36573 Brassica carinata HOM05D000163 ORTHO05D000219 2.8e-11 71.6 79 43.0
Thhalv10022572m.g Eutrema salsugineum HOM05D000163 ORTHO05D000219 2.8e-11 71.6 87 40.2
vmacro17141 Vaccinium macrocarpon HOM05D000163 ORTHO05D000219 2.8e-11 71.6 77 42.9
vmacro17207 Vaccinium macrocarpon HOM05D000163 ORTHO05D000219 2.8e-11 71.6 77 42.9
Nn6g35542 Nelumbo nucifera HOM05D000163 ORTHO05D000219 3.7e-11 71.2 76 47.4
Lj4C290T4 Lonicera japonica HOM05D000163 ORTHO05D000219 4.8e-11 70.9 45 62.2
BcaB08g34860 Brassica carinata HOM05D000163 ORTHO05D000219 6.2e-11 70.5 76 43.4
Glyma.13G106533 Glycine max HOM05D000163 ORTHO05D000219 6.2e-11 70.5 72 45.8
THA.LOC104814012 Tarenaya hassleriana HOM05D000163 ORTHO05D000219 6.2e-11 70.5 78 43.6
DCAR_024716 Daucus carota HOM05D000163 ORTHO05D000219 8.1e-11 70.1 70 47.1
A07p16290 Brassica napus HOM05D000163 ORTHO05D000219 1.1e-10 69.7 79 43.0
C07p23990 Brassica napus HOM05D000163 ORTHO05D000219 1.1e-10 69.7 79 43.0
BolC7t42923H Brassica oleracea HOM05D000163 ORTHO05D000219 1.1e-10 69.7 79 43.0
BraA07t29357Z Brassica rapa HOM05D000163 ORTHO05D000219 1.1e-10 69.7 79 43.0
CANSAT56G4029 Cannabis sativa HOM05D000163 ORTHO05D000219 1.1e-10 69.7 75 44.0
MD02G1084100 Malus domestica HOM05D000163 ORTHO05D000219 1.1e-10 69.7 79 43.0
Lsat_1_v5_gn_5_143200 Lactuca sativa HOM05D000163 ORTHO05D000219 1.4e-10 69.3 75 45.3
ECA234G3404 Erigeron canadensis HOM05D000163 ORTHO05D000219 2.4e-10 68.6 67 47.8
BcaB03g14390 Brassica carinata HOM05D000163 ORTHO05D000219 3.1e-10 68.2 79 43.0
C07p02750 Brassica napus HOM05D000163 ORTHO05D000219 3.1e-10 68.2 82 42.7
Rhsim05G0015200 Rhododendron simsii HOM05D000163 ORTHO05D000219 3.1e-10 68.2 79 40.5
MSTRG.10541 Avicennia marina HOM05D000163 ORTHO05D000219 4.0e-10 67.8 69 46.4
Sc14g0000640 Simmondsia chinensis HOM05D000163 ORTHO05D000219 4.0e-10 67.8 79 43.0
MSTRG.26446 Avicennia marina HOM05D000163 ORTHO05D000219 5.3e-10 67.4 72 44.4
Sc18g0002300 Simmondsia chinensis HOM05D000163 ORTHO05D000219 5.3e-10 67.4 79 44.3
TWI34G1142 Tripterygium wilfordii HOM05D000163 ORTHO05D000219 6.9e-10 67.0 70 45.7
Aa31LG3G12930 Aethionema arabicum HOM05D000163 ORTHO05D000219 1.2e-09 66.2 77 40.3
BcaB07g31610 Brassica carinata HOM05D000163 ORTHO05D000219 1.2e-09 66.2 79 41.8
BraA03t10611Z Brassica rapa HOM05D000163 ORTHO05D000219 2.0e-09 65.5 78 42.3
Zm00001eb385250 Zea mays HOM05D000163 ORTHO05D000219 2.0e-09 65.5 76 42.1
Sed0025764 Sechium edule HOM05D000163 ORTHO05D000219 2.6e-09 65.1 74 41.9
RcHm_v2.0_Chr7g0232521 Rosa chinensis HOM05D000163 ORTHO05D000962 3.4e-09 64.7 40 65.0
A03p13010 Brassica napus HOM05D000163 ORTHO05D000219 4.5e-09 64.3 78 41.0
Os06g0574200 Oryza sativa ssp. japonica HOM05D000163 ORTHO05D000219 4.5e-09 64.3 67 46.3
AL8G32940 Arabidopsis lyrata HOM05D000163 ORTHO05D000219 5.8e-09 63.9 80 41.2
BcaB01g04440 Brassica carinata HOM05D000163 ORTHO05D000219 5.8e-09 63.9 78 43.6
BcaNung07293 Brassica carinata HOM05D000163 ORTHO05D000219 5.8e-09 63.9 78 43.6
Carub.0008s1754 Capsella rubella HOM05D000163 ORTHO05D000219 1.0e-08 63.2 78 41.0
vmacro17147 Vaccinium macrocarpon HOM05D000163 ORTHO05D000219 1.0e-08 63.2 74 40.5
Sp6g18750 Schrenkiella parvula HOM05D000163 ORTHO05D000219 1.3e-08 62.8 78 41.0
AT5G57035 Arabidopsis thaliana HOM05D000163 ORTHO05D000219 2.2e-08 62.0 78 39.7
BcaC01g06462 Brassica carinata HOM05D000163 ORTHO05D000219 2.2e-08 62.0 78 41.0
C03p15180 Brassica napus HOM05D000163 ORTHO05D000219 2.2e-08 62.0 78 41.0
BolC3t13959H Brassica oleracea HOM05D000163 ORTHO05D000219 2.2e-08 62.0 78 41.0
MELO3C004634.2 Cucumis melo HOM05D000163 ORTHO05D000219 2.2e-08 62.0 74 40.5
BcaC04g20020 Brassica carinata HOM05D000163 ORTHO05D000219 3.8e-08 61.2 78 41.0
C09p48700 Brassica napus HOM05D000163 ORTHO05D000219 3.8e-08 61.2 78 41.0
BraA10t43527Z Brassica rapa HOM05D000163 ORTHO05D000219 3.8e-08 61.2 78 41.0
Thhalv10012732m.g Eutrema salsugineum HOM05D000163 ORTHO05D000219 3.8e-08 61.2 78 39.7
ClCG11G001660 Citrullus lanatus HOM05D000163 ORTHO05D000219 6.5e-08 60.5 75 40.0
Aqoxy7G04001 Aquilegia oxysepala HOM05D000163 ORTHO05D000219 8.4e-08 60.1 75 36.0
BcaB08g36015 Brassica carinata HOM05D000163 ORTHO05D000219 8.4e-08 60.1 78 39.7
CARHR270790 Cardamine hirsuta HOM05D000163 ORTHO05D000219 8.4e-08 60.1 76 42.1
Migut.L01524 Erythranthe guttata HOM05D000163 ORTHO05D000219 8.4e-08 60.1 66 40.9
PSO210G4479 Papaver somniferum HOM05D000163 ORTHO05D000219 1.1e-07 59.7 78 37.2
Ah.09g228010 Amaranthus hybridus HOM05D000163 ORTHO05D000219 1.4e-07 59.3 48 54.2
BcaB03g16727 Brassica carinata HOM05D000163 ORTHO05D000219 1.4e-07 59.3 44 54.5
BolC9t57718H Brassica oleracea HOM05D000163 ORTHO05D000219 1.4e-07 59.3 78 39.7
CsaV3_2G001360 Cucumis sativus L. HOM05D000163 ORTHO05D000219 1.9e-07 58.9 69 39.1
A10p14360 Brassica napus HOM05D000163 ORTHO05D000219 7.1e-07 57.0 78 39.7
PSO210G4606 Papaver somniferum HOM05D000163 ORTHO05D000219 9.3e-07 56.6 78 39.7
Zm00001eb205230 Zea mays HOM05D000163 ORTHO05D000219 1.6e-06 55.8 73 38.4
PSO210G2898 Papaver somniferum HOM05D000163 ORTHO05D000219 3.5e-06 54.7 78 34.6
SEGI_07906 Sequoiadendron giganteum HOM05D000163 ORTHO05D000219 3.5e-06 54.7 71 38.0
ATR0051G005 Amborella trichopoda HOM05D000163 ORTHO05D000219 6.0e-06 53.9 67 40.3


User provided reference genes

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