Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.3e-179 632.1 320 100.0
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 1.8e-163 579.3 302 95.7
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 1.2e-162 576.6 302 95.4
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 2.0e-162 575.9 302 95.0
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 1.3e-161 573.2 302 94.0
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 2.2e-161 572.4 302 93.4
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.1e-160 570.1 317 91.8
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.6e-156 556.2 302 93.4
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 6.4e-153 544.3 302 87.7
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.9e-152 542.7 302 87.4
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 4.1e-152 541.6 296 87.8
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 1.7e-150 536.2 302 87.4
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 3.0e-150 535.4 302 86.8
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 6.6e-150 534.3 302 86.4
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 8.6e-150 533.9 302 86.1
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 1.5e-149 533.1 317 84.5
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 1.9e-149 532.7 302 85.8
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 2.5e-149 532.3 302 86.1
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 3.3e-149 531.9 296 87.8
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 3.3e-149 531.9 299 86.6
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 5.6e-149 531.2 302 86.1
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 5.6e-149 531.2 302 85.8
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 5.6e-149 531.2 302 85.4
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 7.3e-149 530.8 302 85.8
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 7.3e-149 530.8 302 86.4
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 7.3e-149 530.8 302 86.1
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 9.5e-149 530.4 302 86.4
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 9.5e-149 530.4 317 83.3
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 9.5e-149 530.4 317 83.9
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 2.1e-148 529.3 302 85.8
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 2.1e-148 529.3 317 83.3
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 2.8e-148 528.9 302 85.8
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 2.8e-148 528.9 302 86.8
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 4.7e-148 528.1 297 86.9
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 6.2e-148 527.7 317 83.0
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 8.1e-148 527.3 302 85.8
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 8.1e-148 527.3 302 85.4
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 1.1e-147 526.9 317 82.3
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 1.8e-147 526.2 302 84.1
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 2.3e-147 525.8 302 84.8
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 6.8e-147 524.2 302 85.1
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 8.9e-147 523.9 302 85.1
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 2.6e-146 522.3 302 84.1
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 2.6e-146 522.3 302 83.8
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 4.4e-146 521.5 304 85.2
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 1.3e-145 520.0 302 84.4
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 1.3e-145 520.0 302 82.8
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 3.7e-145 518.5 302 82.8
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 4.9e-145 518.1 297 85.2
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 1.1e-144 516.9 295 85.8
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 1.1e-144 516.9 317 81.7
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 1.9e-144 516.2 317 80.4
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 7.1e-144 514.2 297 85.5
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 7.1e-144 514.2 302 83.1
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 9.2e-144 513.8 297 83.5
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 9.2e-144 513.8 296 84.5
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 2.7e-143 512.3 302 83.8
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 3.5e-143 511.9 297 85.5
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 3.5e-143 511.9 295 84.4
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 7.8e-143 510.8 302 82.5
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 1.7e-142 509.6 302 81.5
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 2.3e-142 509.2 297 82.8
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 2.3e-142 509.2 302 82.5
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 2.3e-142 509.2 317 81.1
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 3.0e-142 508.8 302 81.5
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 3.9e-142 508.4 296 84.1
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 3.9e-142 508.4 295 83.7
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 5.1e-142 508.1 297 83.5
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 5.1e-142 508.1 320 79.1
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 6.6e-142 507.7 302 82.1
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 8.6e-142 507.3 295 85.1
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 8.6e-142 507.3 302 81.8
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 1.1e-141 506.9 295 83.7
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 1.5e-141 506.5 297 82.8
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.5e-141 506.5 316 80.1
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 2.5e-141 505.8 295 83.1
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 3.3e-141 505.4 296 84.5
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 5.6e-141 504.6 297 82.5
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 7.3e-141 504.2 297 81.5
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 9.5e-141 503.8 302 81.5
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 1.6e-140 503.1 296 83.4
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 1.6e-140 503.1 296 83.4
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 2.1e-140 502.7 297 83.5
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 3.6e-140 501.9 317 79.5
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 4.7e-140 501.5 315 80.0
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 4.7e-140 501.5 297 82.5
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 6.2e-140 501.1 304 79.9
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 8.1e-140 500.7 317 77.0
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 1.1e-139 500.4 295 83.7
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 3.1e-139 498.8 297 82.8
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 6.8e-139 497.7 290 83.8
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 6.8e-139 497.7 295 83.7
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 1.2e-138 496.9 297 82.2
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 1.2e-138 496.9 295 82.0
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 1.2e-138 496.9 302 80.5
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 1.2e-138 496.9 337 74.8
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 2.0e-138 496.1 297 81.5
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 4.4e-138 495.0 296 82.8
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 5.8e-138 494.6 302 78.5
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 9.9e-138 493.8 290 83.1
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 1.3e-137 493.4 297 81.5
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 1.3e-137 493.4 297 81.1
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 2.9e-137 492.3 297 80.8
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 3.8e-137 491.9 298 81.5
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 4.9e-137 491.5 290 83.8
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 1.4e-136 490.0 295 81.0
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 1.4e-136 490.0 290 82.1
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 1.9e-136 489.6 290 83.4
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 1.9e-136 489.6 290 83.4
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 2.4e-136 489.2 296 79.1
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 5.4e-136 488.0 321 75.7
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 7.1e-136 487.6 290 82.1
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 2.1e-135 486.1 302 77.5
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 2.7e-135 485.7 291 81.8
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 2.7e-135 485.7 302 77.8
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 3.5e-135 485.3 290 82.4
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 3.3e-133 478.8 297 76.4
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.6e-132 475.3 254 94.5
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 1.4e-131 473.4 317 77.3
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.8e-131 473.0 302 75.8
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 5.8e-130 468.0 302 74.8
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 3.2e-128 462.2 314 72.3
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 9.3e-128 460.7 296 77.7
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 2.1e-124 449.5 317 73.2
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 3.6e-124 448.7 297 71.4
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 3.1e-107 392.5 236 81.8
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 3.0e-102 375.9 296 64.2
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 9.6e-101 370.9 296 62.5
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 1.2e-95 354.0 197 88.3
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 1.3e-94 350.5 297 60.6
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 3.7e-92 342.4 278 60.8
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 2.2e-84 316.6 192 81.2
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 2.2e-73 280.0 318 45.6
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 2.3e-70 270.0 183 74.9
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 8.5e-65 251.5 141 85.1
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 7.2e-64 248.4 300 44.0
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 4.7e-63 245.7 297 43.4
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.1e-59 233.0 186 70.4
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 2.6e-45 186.8 119 79.0
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 4.1e-43 179.5 109 79.8
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 8.1e-31 138.7 90 75.6
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 2.7e-26 123.6 74 78.4
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 3.5e-26 123.2 74 77.0
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 3.5e-26 123.2 74 77.0
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 1.0e-25 121.7 74 77.0
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 1.7e-25 120.9 74 77.0
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 1.7e-25 120.9 82 80.5
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 3.9e-25 119.8 74 75.7
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 1.1e-24 118.2 71 77.5
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 4.9e-20 102.8 60 76.7
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 1.4e-19 101.3 60 76.7
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 1.4e-19 101.3 60 76.7
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 4.3e-16 89.7 62 62.9
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 4.3e-16 89.7 63 69.8
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 4.7e-15 86.3 61 72.1
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 3.0e-09 67.0 51 62.7


User provided reference genes

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