Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003173g0040 Nicotiana tabacum HOM05D003586 ORTHO05D004036 0.0e+00 4060.4 2127 100.0
Solyc03g093480.3 Solanum lycopersicum HOM05D003586 ORTHO05D004036 0.0e+00 3529.2 2151 85.4
Sopen03g024310 Solanum pennellii HOM05D003586 ORTHO05D004036 0.0e+00 3525.3 2151 85.4
Peaxi162Scf00271g00727 Petunia axillaris HOM05D003586 ORTHO05D004036 0.0e+00 3446.4 2153 84.3
Nitab4.5_0005495g0020 Nicotiana tabacum HOM05D003586 ORTHO05D004036 0.0e+00 3306.9 1860 93.7
Dinv06595 Davidia involucrata HOM05D003586 ORTHO05D004036 0.0e+00 2411.3 2168 60.0
CSS0040773 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 0.0e+00 2402.5 2173 60.0
CAN.G485.20 Capsicum annuum HOM05D003586 ORTHO05D004036 0.0e+00 2345.1 1460 84.3
CSS0004894 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 0.0e+00 2328.1 2173 58.6
vmacro06834 Vaccinium macrocarpon HOM05D003586 ORTHO05D004036 0.0e+00 2263.0 2187 56.8
Oeu060859.1 Olea europaea HOM05D003586 ORTHO05D004036 0.0e+00 2245.3 2163 56.5
GSVIVG01013976001 Vitis vinifera HOM05D003586 ORTHO05D004036 0.0e+00 2232.6 2189 56.3
Rhsim03G0161600 Rhododendron simsii HOM05D003586 ORTHO05D004036 0.0e+00 2213.0 2266 54.9
TAR375G0563 Trochodendron aralioides HOM05D003586 ORTHO05D004036 0.0e+00 2186.8 2175 55.1
Cfa013573 Carpinus fangiana HOM05D003586 ORTHO05D004036 0.0e+00 2182.1 2167 55.0
Ciclev10004122m.g Citrus clementina HOM05D003586 ORTHO05D004036 0.0e+00 2151.3 2171 54.3
DCAR_027698 Daucus carota HOM05D003586 ORTHO05D004036 0.0e+00 2127.1 2183 53.8
QL09p028029 Quercus lobata HOM05D003586 ORTHO05D004036 0.0e+00 2122.1 2215 52.8
Lj8C46T11 Lonicera japonica HOM05D003586 ORTHO05D004036 0.0e+00 2103.2 2165 54.1
MSTRG.139 Avicennia marina HOM05D003586 ORTHO05D004036 0.0e+00 2101.2 2162 53.4
Cc02_g04680 Coffea canephora HOM05D003586 ORTHO05D004036 0.0e+00 2101.2 2171 53.7
Manes.14G038400 Manihot esculenta HOM05D003586 ORTHO05D004036 0.0e+00 2083.9 2169 53.5
Lsat_1_v5_gn_8_9561 Lactuca sativa HOM05D003586 ORTHO05D004036 0.0e+00 2073.5 2180 52.0
Potri.003G151500 Populus trichocarpa HOM05D003586 ORTHO05D004036 0.0e+00 2062.7 2168 52.8
Haze_22192 Corylus avellana HOM05D003586 ORTHO05D004036 0.0e+00 2058.9 2205 52.3
Prupe.2G273000 Prunus persica HOM05D003586 ORTHO05D004036 0.0e+00 2058.1 2168 52.8
TWI23G0434 Tripterygium wilfordii HOM05D003586 ORTHO05D004036 0.0e+00 2046.9 2173 51.6
Thecc.03G149300 Theobroma cacao HOM05D003586 ORTHO05D004036 0.0e+00 2041.5 2198 51.7
Nn1g00886 Nelumbo nucifera HOM05D003586 ORTHO05D004036 0.0e+00 2030.4 2187 51.7
MD07G1249300 Malus domestica HOM05D003586 ORTHO05D004036 0.0e+00 2017.3 2173 52.0
HanXRQChr05g0139491 Helianthus annuus HOM05D003586 ORTHO05D004036 0.0e+00 2007.6 2177 51.0
Gorai.001G050900 Gossypium raimondii HOM05D003586 ORTHO05D004036 0.0e+00 1997.6 2199 50.4
Gohir.D07G047701 Gossypium hirsutum HOM05D003586 ORTHO05D004036 0.0e+00 1993.0 2199 50.5
Migut.O00372 Erythranthe guttata HOM05D003586 ORTHO05D004036 0.0e+00 1983.8 2198 51.4
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 0.0e+00 1962.6 2228 50.1
SGA_v2.0_scaffold56G19917 Striga asiatica HOM05D003586 ORTHO05D004036 0.0e+00 1959.9 2290 49.3
Sabra03G0109700 Salix brachista HOM05D003586 ORTHO05D004036 0.0e+00 1959.5 2298 49.0
CsaV3_4G004170 Cucumis sativus L. HOM05D003586 ORTHO05D004036 0.0e+00 1949.9 2169 49.8
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 0.0e+00 1949.5 2175 50.4
arahy.Tifrunner.gnm1.ann1.DI5547 Arachis hypogaea HOM05D003586 ORTHO05D004036 0.0e+00 1947.2 2178 49.9
Hund18595 Selenicereus undatus HOM05D003586 ORTHO05D004036 0.0e+00 1943.7 2172 49.8
LjContig00272g0012466 Lotus japonicus HOM05D003586 ORTHO05D004036 0.0e+00 1942.9 2169 49.9
EL10Ac7g18161 Beta vulgaris HOM05D003586 ORTHO05D004036 0.0e+00 1938.7 2167 49.6
arahy.Tifrunner.gnm1.ann1.1899LM Arachis hypogaea HOM05D003586 ORTHO05D004036 0.0e+00 1938.3 2178 49.8
Gohir.A07G043301 Gossypium hirsutum HOM05D003586 ORTHO05D004036 0.0e+00 1932.5 2205 49.4
Sed0010855 Sechium edule HOM05D003586 ORTHO05D004036 0.0e+00 1932.5 2174 49.9
AUR62025663 Chenopodium quinoa HOM05D003586 ORTHO05D004036 0.0e+00 1927.5 2175 48.6
Lalb_Chr04g0248471 Lupinus albus HOM05D003586 ORTHO05D004036 0.0e+00 1925.6 2172 49.6
Psat2g013320 Pisum sativum HOM05D003586 ORTHO05D004036 0.0e+00 1918.7 2176 49.5
Duzib205G0263 Durio zibethinus HOM05D003586 ORTHO05D004036 0.0e+00 1917.1 2188 49.5
PGR042G0622 Punica granatum HOM05D003586 ORTHO05D004036 0.0e+00 1907.5 2178 49.4
Glyma.02G290200 Glycine max HOM05D003586 ORTHO05D004036 0.0e+00 1906.7 2178 49.4
AUR62001342 Chenopodium quinoa HOM05D003586 ORTHO05D004036 0.0e+00 1901.7 2176 48.0
Ca_26483_v3 Cicer arietinum L. HOM05D003586 ORTHO05D004036 0.0e+00 1901.7 2178 49.3
Aqoxy7G00839 Aquilegia oxysepala HOM05D003586 ORTHO05D004036 0.0e+00 1899.8 2182 49.5
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 0.0e+00 1892.5 2158 49.5
Glyma.14G024600 Glycine max HOM05D003586 ORTHO05D004036 0.0e+00 1881.3 2179 49.0
Phvul.008G266400 Phaseolus vulgaris HOM05D003586 ORTHO05D004036 0.0e+00 1874.0 2182 48.4
FvH4_7g26990 Fragaria vesca HOM05D003586 ORTHO05D004036 0.0e+00 1835.8 2169 48.7
PSO732G0142 Papaver somniferum HOM05D003586 ORTHO05D004036 0.0e+00 1820.1 2184 47.6
FAN03G1177 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1818.5 2185 48.1
PSO675G9104 Papaver somniferum HOM05D003586 ORTHO05D004036 0.0e+00 1813.9 2185 47.2
FAN06G2502 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1810.4 2201 48.1
FAN10G2285 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1800.8 2200 47.8
FAN01G1639 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1795.0 2200 47.8
CiPaw.07G185400 Carya illinoinensis HOM05D003586 ORTHO05D004036 0.0e+00 1786.5 1960 50.7
THA.LOC104811536 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 0.0e+00 1783.5 2238 46.5
Thhalv10019871m.g Eutrema salsugineum HOM05D003586 ORTHO05D004036 0.0e+00 1741.1 2243 45.7
Ah.08g217720 Amaranthus hybridus HOM05D003586 ORTHO05D004036 0.0e+00 1737.2 2161 46.9
Aa31LG5G17060 Aethionema arabicum HOM05D003586 ORTHO05D004036 0.0e+00 1718.4 2247 45.1
Carub.0003s0599 Capsella rubella HOM05D003586 ORTHO05D004036 0.0e+00 1714.1 2246 45.2
BraA05t22871Z Brassica rapa HOM05D003586 ORTHO05D004036 0.0e+00 1702.2 2246 44.7
AT3G06530 Arabidopsis thaliana HOM05D003586 ORTHO05D004036 0.0e+00 1693.7 2246 44.5
AL3G17560 Arabidopsis lyrata HOM05D003586 ORTHO05D004036 0.0e+00 1690.2 2250 44.5
C05p60700 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1687.9 2242 44.6
Medtr5g092370 Medicago truncatula HOM05D003586 ORTHO05D004036 0.0e+00 1683.3 2172 46.8
CARHR081080 Cardamine hirsuta HOM05D003586 ORTHO05D004036 0.0e+00 1680.2 2241 44.8
BolC5t34730H Brassica oleracea HOM05D003586 ORTHO05D004036 0.0e+00 1672.5 2250 44.3
Sp3g05470 Schrenkiella parvula HOM05D003586 ORTHO05D004036 0.0e+00 1646.7 2246 44.2
Sc20g0000680 Simmondsia chinensis HOM05D003586 ORTHO05D004036 0.0e+00 1588.9 1954 45.9
ATR0057G101 Amborella trichopoda HOM05D003586 ORTHO05D004036 0.0e+00 1555.0 2209 43.6
Zm00001eb123540 Zea mays HOM05D003586 ORTHO05D004036 0.0e+00 1509.6 2195 41.4
SHI14045 Sapria himalayana HOM05D003586 ORTHO05D004036 0.0e+00 1499.6 2329 40.2
Eucgr.A02921 Eucalyptus grandis HOM05D003586 ORTHO05D004036 0.0e+00 1494.6 1760 48.2
SalBow2G0990 Salvia bowleyana HOM05D003586 ORTHO05D004036 0.0e+00 1458.4 1535 53.2
CDE04G1406 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 0.0e+00 1449.5 2191 40.3
RcHm_v2.0_Chr1g0373721 Rosa chinensis HOM05D003586 ORTHO05D004036 0.0e+00 1448.0 1809 46.9
CANSAT56G2655 Cannabis sativa HOM05D003586 ORTHO05D004036 0.0e+00 1441.0 1865 46.6
Actinidia13607 Actinidia chinensis HOM05D003586 ORTHO05D004036 0.0e+00 1420.6 1416 55.2
ClCG07G016940 Citrullus lanatus HOM05D003586 ORTHO05D004036 0.0e+00 1356.7 1701 46.2
unitig_62.g23920 Utricularia gibba HOM05D003586 ORTHO05D004036 0.0e+00 1323.9 2165 40.2
C03p42210 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1297.7 1832 43.2
BolC3t16501H Brassica oleracea HOM05D003586 ORTHO05D004036 0.0e+00 1292.3 1835 43.4
A05p41500 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1281.9 1830 43.0
Atru.chr1.904 Acer truncatum HOM05D003586 ORTHO05D004036 0.0e+00 1281.2 1369 51.1
BraA03t12653Z Brassica rapa HOM05D003586 ORTHO05D004036 0.0e+00 1276.5 1841 43.0
A03p34730 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1275.4 1841 42.9
Hma1.2p1_1404F.1_g281290 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 0.0e+00 1110.1 1070 57.2
MELO3C017650.2 Cucumis melo HOM05D003586 ORTHO05D004036 4.2e-301 1039.3 1165 48.9
CAN.G485.19 Capsicum annuum HOM05D003586 ORTHO05D004036 1.5e-295 1020.8 627 85.5
Cpa.g.sc13.262 Carica papaya HOM05D003586 ORTHO05D004036 8.5e-286 988.4 987 55.2
Mapoly0043s0008 Marchantia polymorpha HOM05D003586 ORTHO05D004036 6.5e-262 909.1 2227 31.2
HPP92_014934 Vanilla planifolia HOM05D003586 ORTHO05D004036 1.4e-259 901.4 1209 43.8
Hma1.2p1_1404F.1_g281300 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 6.1e-252 875.9 723 64.0
MBI05_g26488_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.5e-250 871.3 1426 39.9
Pp3c3_10580 Physcomitrium patens HOM05D003586 ORTHO05D004036 3.3e-245 853.6 2226 30.5
MBI05_g28033_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 6.0e-239 832.8 816 56.0
SMO358G0582 Selaginella moellendorffii HOM05D003586 ORTHO05D004036 1.8e-227 794.7 2167 29.4
AagrBONN_evm.TU.Sc2ySwM_344.3595 Anthoceros agrestis HOM05D003586 ORTHO05D004036 5.8e-218 763.1 2105 28.2
HPP92_014907 Vanilla planifolia HOM05D003586 ORTHO05D004036 9.9e-218 762.3 1157 40.2
MBI13_g48198_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.8e-212 744.2 849 51.1
MBI01_g47166_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.2e-210 738.8 847 51.6
CBR_g19186 Chara braunii HOM05D003586 ORTHO05D004036 9.3e-200 702.6 2324 26.8
CANSAT56G4028 Cannabis sativa HOM05D003586 ORTHO05D004036 1.3e-190 672.2 830 45.5
MBI13_g42134_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 5.9e-186 656.8 801 50.6
SalBow2G2772 Salvia bowleyana HOM05D003586 ORTHO05D004036 8.5e-185 652.9 617 55.6
Hma1.2p1_1580F.1_g291890 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 2.1e-175 621.7 636 54.6
Nitab4.5_0005495g0030 Nicotiana tabacum HOM05D003586 ORTHO05D004036 1.5e-165 589.0 310 98.7
MBI01_g47186_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.0e-145 523.1 703 45.8
ClCG07G016950 Citrullus lanatus HOM05D003586 ORTHO05D004036 8.0e-143 513.5 500 54.8
Cpa.g.sc13.258 Carica papaya HOM05D003586 ORTHO05D004036 3.4e-133 481.5 562 49.1
FAN06G4468 Fragaria x ananassa HOM05D003586 ORTHO05D004036 4.7e-119 434.5 624 41.2
MBI05_g26487_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.2e-117 429.9 382 56.0
MBI13_g19469_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.0e-117 429.1 769 37.6
Oeu055354.1 Olea europaea HOM05D003586 ORTHO05D004036 3.4e-117 428.3 382 58.4
MBI01_g30817_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 4.4e-117 427.9 611 43.7
RcHm_v2.0_Chr1g0373711 Rosa chinensis HOM05D003586 ORTHO05D004036 9.5e-112 410.2 360 57.8
SEGI_04827 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 2.6e-109 402.1 645 37.8
MBI01_g18557_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.9e-108 398.7 405 55.6
SHI14048 Sapria himalayana HOM05D003586 ORTHO05D004036 4.7e-103 381.3 868 33.3
Oeu013973.1 Olea europaea HOM05D003586 ORTHO05D004036 2.2e-92 345.9 306 63.1
TPR.G35189 Trifolium pratense HOM05D003586 ORTHO05D004036 3.0e-89 335.5 384 48.4
THA.LOC104802945 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 1.2e-85 323.6 266 66.9
MBI01_g47337_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 4.2e-83 315.1 482 42.7
MBI01_g24305_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 7.1e-75 287.7 391 45.8
Migut.F01200 Erythranthe guttata HOM05D003586 ORTHO05D004036 3.5e-74 285.4 220 69.1
Os04g0548300 Oryza sativa ssp. japonica HOM05D003586 ORTHO05D004036 1.0e-73 283.9 232 65.5
Glyma.03G109700 Glycine max HOM05D003586 ORTHO05D004036 4.8e-71 275.0 362 40.6
Cpa.g.sc13.260 Carica papaya HOM05D003586 ORTHO05D004036 3.8e-68 265.4 610 32.8
FAN06G2869 Fragaria x ananassa HOM05D003586 ORTHO05D004036 1.1e-67 263.8 199 65.8
Lsat_1_v5_gn_1_161 Lactuca sativa HOM05D003586 ORTHO05D004036 4.6e-66 258.5 307 45.3
Atru.chr1.903 Acer truncatum HOM05D003586 ORTHO05D004036 9.4e-59 234.2 275 51.6
Glyma.08G286950 Glycine max HOM05D003586 ORTHO05D004036 2.0e-56 226.5 306 40.8
Rhsim03G0111100 Rhododendron simsii HOM05D003586 ORTHO05D004036 5.7e-56 224.9 335 42.1
MBI01_g18556_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.2e-55 223.0 334 44.0
Cre12.g548000 Chlamydomonas reinhardtii HOM05D003586 ORTHO05D004036 1.4e-54 220.3 2591 20.4
Psat0s4851g0040 Pisum sativum HOM05D003586 ORTHO05D004036 2.0e-53 216.5 206 52.4
Psat0s7016g0120 Pisum sativum HOM05D003586 ORTHO05D004036 2.0e-53 216.5 206 52.4
Dinv06589 Davidia involucrata HOM05D003586 ORTHO05D004036 3.8e-52 212.2 127 85.8
PGSC0003DMG400010751 Solanum tuberosum HOM05D003586 ORTHO05D004036 1.2e-50 207.2 116 94.8
MCO07G739 Micromonas commoda HOM05D003586 ORTHO05D004036 2.0e-48 199.9 386 33.4
PSO782G1165 Papaver somniferum HOM05D003586 ORTHO05D004036 3.7e-47 195.7 370 37.3
SHI14050 Sapria himalayana HOM05D003586 ORTHO05D004036 8.5e-44 184.5 145 66.2
Psat1g100680 Pisum sativum HOM05D003266 ORTHO05D003718 4.7e-42 178.7 228 46.1
MBI13_g17200_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.1e-35 157.5 94 87.2
Psat5g116160 Pisum sativum HOM05D003586 ORTHO05D004036 1.7e-31 143.7 149 49.7
PSO782G1733 Papaver somniferum HOM05D003586 ORTHO05D004036 7.0e-30 138.3 237 39.2
SEGI_01219 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 8.3e-23 114.8 249 30.9
Psat1g036520 Pisum sativum HOM05D003586 ORTHO05D004036 1.7e-20 107.1 131 48.1
Cfa023294 Carpinus fangiana HOM05D003586 ORTHO05D004036 4.3e-19 102.4 333 24.6
Gorai.003G117300 Gossypium raimondii HOM05D003586 ORTHO05D004036 1.0e-17 97.8 179 31.8
Gohir.D03G110801 Gossypium hirsutum HOM05D003586 ORTHO05D004036 6.8e-17 95.1 179 31.8
HPP92_014933 Vanilla planifolia HOM05D003586 ORTHO05D004036 2.6e-16 93.2 203 31.5
THA.LOC104803128 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 3.4e-16 92.8 209 32.1
VMungo0251G1425 Vigna mungo HOM05D003586 ORTHO05D004036 3.4e-16 92.8 140 34.3
Actinidia09313 Actinidia chinensis HOM05D003586 ORTHO05D004036 3.2e-14 86.3 68 67.6
PRCOL_00000377 Prasinoderma coloniale HOM05D003586 ORTHO05D004036 5.4e-14 85.5 924 19.9
SHI14054 Sapria himalayana HOM05D003586 ORTHO05D004036 7.8e-13 81.6 58 69.0
SEGI_27748 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 1.3e-12 80.9 154 38.3
SEGI_38341 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 1.7e-12 80.5 183 29.0
arahy.Tifrunner.gnm1.ann1.KSY044 Arachis hypogaea HOM05D000218 ORTHO05D000125 7.3e-11 75.1 50 66.0
C05p54660 Brassica napus HOM05D000558 ORTHO05D004036 7.3e-11 75.1 251 30.7
CDE12G0325 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 9.5e-11 74.7 86 48.8
Psat5g053280 Pisum sativum HOM05D003586 ORTHO05D004036 3.1e-09 69.7 55 61.8
arahy.Tifrunner.gnm1.ann1.EJWE4G Arachis hypogaea HOM05D003586 ORTHO05D004036 1.7e-07 63.9 52 57.7
arahy.Tifrunner.gnm1.ann1.AGWW40 Arachis hypogaea HOM05D000072 ORTHO05D000026 2.2e-07 63.5 52 57.7
BolC5t34134H Brassica oleracea HOM05D003586 ORTHO05D004036 2.2e-07 63.5 81 44.4
Solyc07g040661.1 Solanum lycopersicum HOM05D003586 ORTHO05D051155 2.2e-07 63.5 61 54.1
Psat0s9248g0040 Pisum sativum HOM05D000015 ORTHO05D018950 3.2e-06 59.7 109 34.9


User provided reference genes

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