Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 1.2e-173 613.2 332 100.0
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 5.2e-158 561.2 338 92.9
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 1.5e-133 479.9 329 79.3
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 2.4e-131 472.6 330 80.9
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 1.4e-115 420.2 318 68.2
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 1.0e-113 414.1 253 81.4
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 1.6e-111 406.8 249 81.1
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 3.1e-110 402.5 301 73.8
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 7.6e-109 397.9 334 66.8
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 1.7e-108 396.7 311 66.9
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 2.9e-108 396.0 256 76.2
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 4.2e-107 392.1 257 76.3
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 9.3e-107 391.0 257 75.9
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 9.3e-107 391.0 338 63.0
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 1.2e-106 390.6 325 63.7
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 2.7e-106 389.4 256 74.2
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 6.1e-106 388.3 253 76.7
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 6.1e-106 388.3 250 75.6
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 7.9e-106 387.9 246 77.2
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 7.9e-106 387.9 286 73.4
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 1.0e-105 387.5 301 66.8
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 3.0e-105 386.0 245 75.9
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 6.7e-105 384.8 283 70.7
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 1.1e-104 384.0 315 62.9
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 1.5e-104 383.6 253 73.1
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 2.5e-104 382.9 313 64.5
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 3.3e-104 382.5 256 72.3
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 3.3e-104 382.5 245 75.5
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 3.3e-104 382.5 338 60.9
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 4.3e-104 382.1 252 75.0
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 4.3e-104 382.1 288 69.8
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 7.4e-104 381.3 245 75.1
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 9.7e-104 380.9 251 74.1
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 9.7e-104 380.9 252 74.6
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 9.7e-104 380.9 253 74.7
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 9.7e-104 380.9 288 69.1
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 1.7e-103 380.2 297 69.4
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 2.2e-103 379.8 253 74.7
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 2.8e-103 379.4 301 65.4
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 2.8e-103 379.4 296 65.2
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 2.8e-103 379.4 328 60.4
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 3.7e-103 379.0 245 77.1
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 4.8e-103 378.6 245 75.1
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 6.3e-103 378.3 323 63.5
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 6.3e-103 378.3 260 73.1
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 8.2e-103 377.9 253 73.9
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 1.1e-102 377.5 245 73.9
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 1.4e-102 377.1 253 74.3
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 1.4e-102 377.1 330 60.9
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 2.4e-102 376.3 253 73.9
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 3.1e-102 375.9 302 67.5
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 4.1e-102 375.6 256 72.3
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 5.3e-102 375.2 242 76.4
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 5.3e-102 375.2 295 67.1
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 9.1e-102 374.4 334 61.4
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 9.1e-102 374.4 245 73.1
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 1.2e-101 374.0 335 60.0
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 1.2e-101 374.0 250 72.8
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 1.5e-101 373.6 322 62.7
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 2.6e-101 372.9 312 66.3
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 3.4e-101 372.5 245 72.7
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 4.5e-101 372.1 255 72.9
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 4.5e-101 372.1 245 73.1
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 1.7e-100 370.2 315 65.4
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 2.9e-100 369.4 336 61.0
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 6.5e-100 368.2 317 63.1
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 1.1e-99 367.5 322 62.1
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 1.2e-98 364.0 252 71.8
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 2.7e-98 362.8 246 70.7
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 1.0e-97 360.9 285 65.6
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 1.8e-97 360.1 281 69.4
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 3.3e-96 355.9 239 74.5
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 5.7e-96 355.1 280 62.1
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 1.7e-95 353.6 251 71.7
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 6.3e-95 351.7 280 61.8
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 1.1e-94 350.9 287 65.9
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 2.4e-94 349.7 245 66.9
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 3.1e-94 349.4 245 70.2
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 1.3e-92 344.0 239 69.9
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 5.0e-92 342.0 275 62.9
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 5.0e-92 342.0 239 69.0
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 6.5e-92 341.7 254 66.5
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 6.5e-92 341.7 254 66.5
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 1.9e-91 340.1 254 66.1
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 1.9e-91 340.1 254 66.1
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 2.5e-91 339.7 239 69.5
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 3.2e-91 339.3 275 62.5
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 5.5e-91 338.6 239 69.0
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 9.4e-91 337.8 296 60.1
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 1.2e-90 337.4 290 61.4
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 2.1e-90 336.7 251 66.9
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 1.0e-89 334.3 276 59.8
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 2.3e-89 333.2 310 65.8
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 3.2e-83 312.8 239 64.9
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 7.2e-83 311.6 236 64.8
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 1.6e-82 310.5 239 64.0
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 8.0e-82 308.1 239 63.2
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 2.0e-80 303.5 305 55.7
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 1.1e-78 297.7 197 72.1
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 2.7e-77 293.1 194 74.2
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 3.1e-70 269.6 245 55.5
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 9.1e-70 268.1 245 50.6
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 1.0e-68 264.6 255 51.8
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 3.3e-67 259.6 249 54.2
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.6e-66 257.3 247 51.4
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 7.3e-59 231.9 161 69.6
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 1.3e-55 221.1 232 48.3
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.7e-52 210.7 186 59.7
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 6.6e-52 208.8 139 73.4
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 1.6e-50 204.1 255 44.3
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.7e-47 194.1 183 56.8
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 4.6e-45 186.0 162 58.0
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 4.6e-45 186.0 141 63.8
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 5.0e-44 182.6 128 71.1
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 2.3e-41 173.7 184 54.9
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 8.3e-39 165.2 167 53.9
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 2.4e-38 163.7 105 73.3
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 2.1e-37 160.6 105 71.4
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 3.6e-34 149.8 162 53.7
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 9.9e-32 141.7 103 66.0
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 1.7e-31 141.0 115 65.2
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 4.9e-31 139.4 109 64.2
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 1.4e-30 137.9 103 63.1
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 2.3e-28 130.6 94 70.2
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 4.7e-26 122.9 74 82.4
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 1.4e-25 121.3 200 33.5
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 3.1e-25 120.2 70 74.3
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 1.2e-24 118.2 91 67.0
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 1.2e-21 108.2 80 63.8
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 1.7e-20 104.4 67 68.7
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 8.7e-20 102.1 137 40.9
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 3.3e-19 100.1 84 60.7
Cre09.g402950 Chlamydomonas reinhardtii HOM05D005205 ORTHO05D006155 8.1e-18 95.5 205 30.7
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 3.1e-17 93.6 116 47.4
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 4.9e-15 86.3 55 76.4
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 6.4e-15 85.9 56 76.8
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 1.4e-14 84.7 50 78.0
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 2.4e-14 84.0 183 31.1
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 2.1e-13 80.9 147 35.4
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 1.8e-12 77.8 99 46.5
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 6.7e-12 75.9 160 31.9
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 2.8e-10 70.5 60 48.3
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 3.1e-09 67.0 68 51.5
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 2.6e-08 63.9 48 56.2
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 1.3e-07 61.6 32 87.5
SalBow1G0093 Salvia bowleyana HOM05D005205 ORTHO05D006155 6.4e-07 59.3 81 45.7


User provided reference genes

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