Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.2e-132 476.5 236 100.0
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.7e-123 446.0 237 95.4
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 8.1e-121 437.2 239 92.1
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 3.8e-118 428.3 239 91.2
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 8.7e-107 390.6 239 83.7
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 2.5e-106 389.0 239 83.3
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 1.9e-93 346.3 200 85.0
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 3.2e-77 292.4 159 90.6
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 3.6e-76 288.9 157 89.8
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 8.5e-62 241.1 224 57.1
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.1e-60 236.5 200 62.0
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.1e-60 236.5 200 62.0
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 2.1e-60 236.5 173 64.2
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.7e-60 236.1 172 68.0
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.7e-60 236.1 172 68.0
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 3.6e-60 235.7 172 68.0
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 3.0e-59 232.6 225 55.6
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 4.8e-57 225.3 179 63.1
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 1.1e-56 224.2 182 62.1
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 4.1e-56 222.2 175 61.1
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 7.0e-56 221.5 179 62.0
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 1.3e-54 217.2 186 59.7
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 2.2e-54 216.5 186 60.2
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 2.2e-54 216.5 162 66.0
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 5.0e-54 215.3 228 51.8
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 1.9e-53 213.4 183 58.5
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 5.5e-53 211.8 169 63.9
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 9.4e-53 211.1 172 62.8
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 2.1e-52 209.9 169 62.1
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 1.8e-51 206.8 155 66.5
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 3.0e-51 206.1 151 65.6
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 5.2e-51 205.3 169 60.4
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 3.4e-50 202.6 163 63.8
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 9.8e-50 201.1 162 64.8
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 1.3e-49 200.7 180 57.2
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 1.3e-49 200.7 180 57.2
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 1.7e-49 200.3 246 46.3
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 1.7e-49 200.3 159 60.4
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 2.2e-49 199.9 157 62.4
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 2.2e-49 199.9 208 52.4
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 2.2e-49 199.9 248 47.2
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 3.7e-49 199.1 152 65.1
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 3.7e-49 199.1 224 51.3
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 4.8e-49 198.7 156 61.5
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 8.3e-49 198.0 171 63.7
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 1.1e-48 197.6 184 55.4
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 4.1e-48 195.7 160 59.4
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 5.4e-48 195.3 161 61.5
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 7.0e-48 194.9 186 53.8
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 1.6e-47 193.7 156 64.7
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 1.6e-47 193.7 147 65.3
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 2.0e-47 193.4 178 54.5
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 2.7e-47 193.0 183 51.4
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 3.5e-47 192.6 156 59.6
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 1.3e-46 190.7 161 60.9
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 2.2e-46 189.9 171 62.6
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 3.8e-46 189.1 167 60.5
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 8.5e-46 188.0 178 55.6
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 8.5e-46 188.0 184 54.9
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 2.5e-45 186.4 160 57.5
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 3.2e-45 186.0 185 54.1
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 3.2e-45 186.0 175 56.0
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 4.2e-45 185.7 126 70.6
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 4.2e-45 185.7 146 61.6
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 1.2e-44 184.1 168 54.2
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 1.6e-44 183.7 126 69.8
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 2.1e-44 183.3 158 59.5
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 6.1e-44 181.8 163 56.4
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 6.1e-44 181.8 163 56.4
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 1.0e-43 181.0 183 55.2
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 1.0e-43 181.0 158 58.2
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 5.2e-43 178.7 171 56.7
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 5.2e-43 178.7 171 56.1
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 8.8e-43 177.9 173 57.2
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 1.2e-42 177.6 181 50.8
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.5e-42 177.2 160 55.6
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 1.3e-41 174.1 168 54.2
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 1.7e-41 173.7 156 58.3
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 2.2e-41 173.3 164 53.7
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 4.9e-41 172.2 161 54.7
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 6.3e-41 171.8 161 54.7
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 6.3e-41 171.8 161 54.7
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 6.3e-41 171.8 161 54.7
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 1.1e-40 171.0 165 55.2
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 1.4e-40 170.6 159 56.0
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 1.4e-40 170.6 202 48.0
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 1.8e-40 170.2 160 55.0
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 1.8e-40 170.2 161 54.0
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 1.8e-40 170.2 161 54.0
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 1.8e-40 170.2 162 55.6
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 1.8e-40 170.2 161 54.0
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 5.4e-40 168.7 159 54.1
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 9.1e-40 167.9 162 54.9
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 1.2e-39 167.5 162 56.2
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 2.0e-39 166.8 161 58.4
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 4.5e-39 165.6 158 55.1
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 1.5e-37 160.6 121 63.6
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 2.5e-37 159.8 164 49.4
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 6.1e-36 155.2 157 52.2
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 2.0e-34 150.2 204 46.1
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 2.6e-34 149.8 110 67.3
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 5.7e-34 148.7 165 47.9
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 5.7e-34 148.7 165 47.9
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 2.2e-33 146.7 89 79.8
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 1.8e-32 143.7 191 46.1
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 2.4e-32 143.3 161 47.8
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 4.1e-32 142.5 152 50.7
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 1.3e-30 137.5 128 56.2
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 4.7e-28 129.0 121 54.5
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 1.2e-26 124.4 99 62.6
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 2.2e-25 120.2 122 55.7
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 8.3e-25 118.2 102 55.9
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 4.1e-24 115.9 193 39.9
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 5.4e-24 115.5 104 55.8
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 4.6e-23 112.5 93 60.2
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 7.8e-23 111.7 91 58.2
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 2.3e-22 110.2 77 62.3
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 8.3e-17 91.7 95 51.6
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 1.1e-13 81.3 105 42.9
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 7.3e-13 78.6 68 52.9
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 2.0e-10 70.5 120 35.8
A05p25490 Brassica napus HOM05D006505 ORTHO05D008086 2.9e-09 66.6 46 60.9
SMO340G0059 Selaginella moellendorffii HOM05D000964 ORTHO05D003870 6.4e-09 65.5 119 33.6
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 1.4e-08 64.3 98 39.8
PSO339G1081 Papaver somniferum HOM05D006505 ORTHO05D008086 3.2e-08 63.2 63 49.2
PSO339G5687 Papaver somniferum HOM05D006505 ORTHO05D008086 7.1e-08 62.0 65 46.2
PSO648G0043 Papaver somniferum HOM05D006505 ORTHO05D008086 7.1e-08 62.0 74 43.2
PSO384G0602 Papaver somniferum HOM05D006505 ORTHO05D008086 9.2e-08 61.6 63 47.6
Cre06.g288400 Chlamydomonas reinhardtii HOM05D000964 ORTHO05D003870 1.0e-06 58.2 121 36.4
Cfa018462 Carpinus fangiana HOM05D000964 ORTHO05D003870 5.1e-06 55.8 123 35.8
Gohir.A05G326932 Gossypium hirsutum HOM05D000964 ORTHO05D003870 5.1e-06 55.8 120 32.5
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 5.1e-06 55.8 142 29.6
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 5.1e-06 55.8 142 29.6
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 5.1e-06 55.8 143 30.8
Medtr3g108030 Medicago truncatula HOM05D000964 ORTHO05D003870 5.1e-06 55.8 120 32.5
VMungo0783G0001 Vigna mungo HOM05D000964 ORTHO05D003870 5.1e-06 55.8 131 32.1
arahy.Tifrunner.gnm1.ann1.U4I6QC Arachis hypogaea HOM05D000964 ORTHO05D003870 6.6e-06 55.5 131 32.1
HanXRQChr06g0180681 Helianthus annuus HOM05D000964 ORTHO05D003870 6.6e-06 55.5 120 31.7
ATR0306G003 Amborella trichopoda HOM05D000964 ORTHO05D003870 8.6e-06 55.1 120 33.3
CAN.G1595.3 Capsicum annuum HOM05D000964 ORTHO05D003870 8.6e-06 55.1 120 31.7
DCAR_032518 Daucus carota HOM05D000964 ORTHO05D003870 8.6e-06 55.1 120 31.7
PSO832G3634 Papaver somniferum HOM05D000964 ORTHO05D003870 8.6e-06 55.1 122 33.6
Solyc00g500030.1 Solanum lycopersicum HOM05D000964 ORTHO05D003870 8.6e-06 55.1 120 31.7
Solyc00g500075.1 Solanum lycopersicum HOM05D000964 ORTHO05D003870 8.6e-06 55.1 120 31.7


User provided reference genes

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