Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 7.0e-215 750.4 384 100.0
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.6e-203 712.6 429 87.4
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 4.9e-192 674.5 429 80.9
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 2.4e-191 672.2 429 81.1
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 2.7e-190 668.7 429 80.7
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 5.1e-189 664.5 429 80.4
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 3.5e-182 641.7 429 78.1
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 2.6e-177 625.5 432 75.9
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 4.9e-176 621.3 429 74.8
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 8.4e-176 620.5 435 77.9
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 7.1e-175 617.5 429 73.9
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 2.1e-174 615.9 429 73.9
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 1.7e-173 612.8 435 73.8
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 3.2e-167 592.0 425 71.1
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 6.0e-166 587.8 429 70.2
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 1.3e-165 586.6 430 70.7
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 1.8e-165 586.3 425 70.8
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 3.0e-165 585.5 430 70.7
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 3.0e-165 585.5 425 71.1
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 1.6e-163 579.7 424 70.0
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 2.8e-163 578.9 421 70.3
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 2.8e-163 578.9 425 70.4
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 1.4e-162 576.6 425 69.6
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 1.8e-162 576.2 425 70.4
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 2.4e-162 575.9 430 68.4
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 5.3e-162 574.7 425 69.9
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 6.9e-162 574.3 425 68.5
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 6.9e-162 574.3 422 69.0
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.0e-160 570.5 425 69.4
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 1.3e-160 570.1 424 69.1
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.3e-160 570.1 425 69.2
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 2.9e-160 568.9 433 70.2
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 6.5e-160 567.8 424 68.6
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 1.9e-159 566.2 425 68.2
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 2.5e-159 565.8 430 66.7
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 4.2e-159 565.1 404 72.3
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 5.5e-159 564.7 425 67.5
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 5.5e-159 564.7 429 66.9
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.2e-158 563.5 425 67.3
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 2.1e-158 562.8 425 68.5
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 4.6e-158 561.6 429 67.4
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 7.9e-158 560.8 425 68.2
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 1.0e-157 560.5 430 69.8
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 1.3e-157 560.1 424 68.2
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 2.3e-157 559.3 424 67.5
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 3.9e-157 558.5 425 68.7
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 5.1e-157 558.1 429 67.8
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 6.7e-157 557.8 425 67.5
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 5.7e-156 554.7 425 68.2
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 9.6e-156 553.9 426 67.4
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 9.6e-156 553.9 429 66.7
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 4.8e-155 551.6 422 66.6
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 8.2e-155 550.8 425 66.8
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 1.1e-154 550.4 427 67.4
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 1.1e-154 550.4 453 64.9
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 9.0e-154 547.4 434 66.4
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 9.0e-154 547.4 423 70.0
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.0e-153 546.2 422 65.9
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 2.6e-153 545.8 427 67.0
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.0e-152 543.9 422 65.9
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 1.7e-152 543.1 422 65.6
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 2.9e-152 542.3 428 65.9
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.8e-152 542.0 425 65.6
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 6.5e-152 541.2 427 65.1
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 9.3e-151 537.3 425 65.2
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 6.1e-150 534.6 425 65.2
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 3.9e-149 531.9 464 60.3
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 3.9e-149 531.9 429 64.3
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 3.9e-149 531.9 318 81.8
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 1.5e-148 530.0 313 82.1
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 1.9e-148 529.6 426 65.5
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 2.5e-148 529.3 452 62.6
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 4.3e-148 528.5 416 67.5
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 7.4e-148 527.7 425 64.9
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 3.7e-147 525.4 427 63.5
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 1.8e-146 523.1 427 63.2
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 4.5e-145 518.5 425 63.8
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 1.0e-144 517.3 422 65.2
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 3.8e-144 515.4 429 65.0
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 1.1e-143 513.8 403 65.3
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 1.9e-143 513.1 422 61.8
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.6e-142 510.0 429 61.8
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 1.6e-142 510.0 427 63.5
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 1.8e-141 506.5 426 62.4
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 3.0e-141 505.8 425 60.7
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 6.3e-139 498.0 425 61.4
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 1.1e-138 497.3 427 61.1
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 3.2e-135 485.7 427 58.8
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 3.6e-134 482.3 426 59.9
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 4.7e-134 481.9 426 59.2
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 4.7e-134 481.9 425 60.2
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 6.1e-134 481.5 425 59.1
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 6.1e-134 481.5 425 60.7
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 6.1e-134 481.5 378 68.3
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 1.0e-133 480.7 427 58.3
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 1.4e-133 480.3 426 58.2
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 1.4e-133 480.3 422 57.8
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 8.8e-133 477.6 425 59.8
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 1.5e-132 476.9 426 59.6
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 1.5e-132 476.9 430 59.1
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 2.8e-131 472.6 439 60.4
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 4.1e-130 468.8 425 57.9
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 4.1e-130 468.8 425 57.9
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 1.2e-129 467.2 425 57.6
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 1.6e-129 466.8 426 57.7
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 3.5e-129 465.7 425 57.6
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 1.0e-128 464.2 422 57.6
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 2.9e-128 462.6 423 57.7
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 6.5e-128 461.5 425 57.4
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 6.5e-128 461.5 422 57.3
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 1.5e-127 460.3 426 57.3
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 1.9e-127 459.9 315 70.8
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 4.2e-127 458.8 425 59.5
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 1.3e-123 447.2 319 69.9
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 2.4e-122 443.0 425 56.0
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.7e-120 436.8 426 55.2
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 2.2e-120 436.4 444 54.5
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 3.2e-119 432.6 318 68.2
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 1.6e-118 430.3 385 60.5
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 2.3e-117 426.4 320 67.8
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 1.2e-116 424.1 309 69.3
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 4.5e-113 412.1 319 65.5
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 2.9e-112 409.5 241 84.2
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 5.0e-112 408.7 239 84.1
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 2.7e-110 402.9 427 50.8
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 4.7e-110 402.1 427 50.1
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 2.3e-109 399.8 451 49.7
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 2.0e-108 396.7 424 50.7
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 6.8e-101 371.7 399 53.9
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 5.6e-95 352.1 312 59.3
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 1.5e-92 344.0 312 58.3
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 1.9e-90 337.0 311 54.3
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 3.1e-85 319.7 336 53.6
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 4.4e-84 315.8 284 58.5
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 3.7e-83 312.8 431 48.7
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 1.6e-70 270.8 192 74.0
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.6e-68 263.5 214 63.6
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 2.4e-66 256.9 429 36.6
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 1.3e-62 244.6 319 46.4
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 4.6e-57 226.1 194 61.3
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 1.4e-53 214.5 298 40.6
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 4.2e-50 203.0 194 55.7
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 5.6e-47 192.6 143 65.0
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 3.1e-45 186.8 357 38.7
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 3.4e-44 183.3 296 41.6
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 1.1e-42 178.3 227 47.1
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 7.4e-31 139.0 293 31.4
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 2.2e-30 137.5 105 67.6
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 1.1e-29 135.2 237 38.8
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 3.9e-24 116.7 78 67.9
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 3.9e-24 116.7 78 67.9
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 2.0e-23 114.4 76 71.1
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.7e-22 111.3 74 63.5
Hma1.2p1_0571F.1_g180740 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 6.1e-17 92.8 66 71.2
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 5.7e-15 86.3 77 50.6
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 5.7e-15 86.3 48 85.4
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 4.5e-12 76.6 60 66.7
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 5.5e-10 69.7 53 69.8
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 3.6e-09 67.0 49 65.3
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 3.6e-09 67.0 49 65.3
EL10As11g23980 Beta vulgaris HOM05D004649 ORTHO05D005446 4.7e-09 66.6 37 78.4
ECA232G4246 Erigeron canadensis HOM05D004649 ORTHO05D005446 1.0e-08 65.5 52 61.5
CARHR069530 Cardamine hirsuta HOM05D002716 ORTHO05D003324 2.0e-07 61.2 205 27.8
Thhalv10007479m.g Eutrema salsugineum HOM05D002716 ORTHO05D003324 4.4e-07 60.1 202 25.2
AL2G36010 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 7.5e-07 59.3 205 26.3
Sp1g17970 Schrenkiella parvula HOM05D002716 ORTHO05D003324 7.5e-07 59.3 202 25.2
Carub.0001s1973 Capsella rubella HOM05D002716 ORTHO05D003324 9.7e-07 58.9 202 25.2
Carub.0002s2288 Capsella rubella HOM05D002716 ORTHO05D003324 9.7e-07 58.9 205 25.9
CARHR020700 Cardamine hirsuta HOM05D002716 ORTHO05D003324 9.7e-07 58.9 202 25.2
AT1G20200 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 1.3e-06 58.5 202 25.2
BcaB03g12876 Brassica carinata HOM05D002716 ORTHO05D003324 1.3e-06 58.5 202 25.2
AL1G33040 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 1.7e-06 58.2 202 25.2
AT1G75990 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 1.7e-06 58.2 205 25.9
A07p41500 Brassica napus HOM05D002716 ORTHO05D003324 2.8e-06 57.4 202 25.2
BraA07t31682Z Brassica rapa HOM05D002716 ORTHO05D003324 2.8e-06 57.4 202 25.2
BcaC08g47308 Brassica carinata HOM05D002716 ORTHO05D003324 3.7e-06 57.0 202 25.2
C06p49910 Brassica napus HOM05D002716 ORTHO05D003324 3.7e-06 57.0 202 25.2
BolC6t40029H Brassica oleracea HOM05D002716 ORTHO05D003324 3.7e-06 57.0 202 25.2
Nn4g22394 Nelumbo nucifera HOM05D004649 ORTHO05D005446 3.7e-06 57.0 38 68.4
Sp5g31110 Schrenkiella parvula HOM05D002716 ORTHO05D003324 3.7e-06 57.0 202 24.8


User provided reference genes

Program Settings