Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002840g0030 Nicotiana tabacum HOM05D006377 ORTHO05D008001 1.4e-100 369.8 205 100.0
Nitab4.5_0002361g0100 Nicotiana tabacum HOM05D006377 ORTHO05D008001 1.3e-95 353.2 206 94.7
CAN.G134.174 Capsicum annuum HOM05D006377 ORTHO05D008001 3.8e-82 308.5 202 85.1
PGSC0003DMG400022504 Solanum tuberosum HOM05D006377 ORTHO05D008001 8.4e-82 307.4 208 86.1
Sopen01g041500 Solanum pennellii HOM05D006377 ORTHO05D008001 6.0e-80 301.2 209 85.6
Solyc01g097910.2 Solanum lycopersicum HOM05D006377 ORTHO05D008001 3.3e-78 295.4 209 84.2
CSS0017897 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 3.4e-67 258.8 208 67.8
Peaxi162Scf00404g00014 Petunia axillaris HOM05D006377 ORTHO05D008001 5.8e-67 258.1 203 70.4
CSS0039444 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 7.6e-67 257.7 208 69.2
TAR365G0273 Trochodendron aralioides HOM05D006377 ORTHO05D008001 3.8e-66 255.4 206 66.5
Cc02_g31420 Coffea canephora HOM05D006377 ORTHO05D008001 4.2e-65 251.9 213 64.3
vmacro05068 Vaccinium macrocarpon HOM05D006377 ORTHO05D008001 5.5e-65 251.5 215 63.7
Hma1.2p1_0332F.1_g127770 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 9.6e-62 240.7 201 70.6
Actinidia05760 Actinidia chinensis HOM05D006377 ORTHO05D008001 1.3e-61 240.4 207 64.7
Rhsim07G0175800 Rhododendron simsii HOM05D006377 ORTHO05D008001 2.4e-60 236.1 207 63.3
Nn2g12517 Nelumbo nucifera HOM05D006377 ORTHO05D008001 3.1e-60 235.7 205 62.9
Lj7P475T32 Lonicera japonica HOM05D006377 ORTHO05D008001 4.1e-60 235.3 207 71.0
Sc20g0000200 Simmondsia chinensis HOM05D006377 ORTHO05D008001 5.3e-60 235.0 208 63.5
EL10Ac4g09192 Beta vulgaris HOM05D006377 ORTHO05D008001 2.6e-59 232.6 204 62.3
ECA238G1597 Erigeron canadensis HOM05D006377 ORTHO05D008001 2.6e-59 232.6 208 63.9
Prupe.6G338600 Prunus persica HOM05D006377 ORTHO05D008001 2.6e-59 232.6 214 63.1
Lsat_1_v5_gn_2_67840 Lactuca sativa HOM05D006377 ORTHO05D008001 1.0e-58 230.7 206 63.1
Oeu027050.1 Olea europaea HOM05D006377 ORTHO05D008001 1.0e-58 230.7 207 64.3
CiPaw.08G178700 Carya illinoinensis HOM05D006377 ORTHO05D008001 1.7e-58 229.9 208 64.9
Oeu012478.1 Olea europaea HOM05D006377 ORTHO05D008001 1.7e-58 229.9 209 63.2
MD12G1236300 Malus domestica HOM05D006377 ORTHO05D008001 3.8e-58 228.8 212 62.7
Ah.06g192660 Amaranthus hybridus HOM05D006377 ORTHO05D008001 6.5e-58 228.0 210 68.1
Duzib177G1058 Durio zibethinus HOM05D006377 ORTHO05D008001 2.5e-57 226.1 215 67.0
MELO3C004358.2 Cucumis melo HOM05D006377 ORTHO05D008001 4.2e-57 225.3 208 60.6
Aqoxy2G02484 Aquilegia oxysepala HOM05D006377 ORTHO05D008001 5.5e-57 224.9 219 63.0
PGR004G2824 Punica granatum HOM05D006377 ORTHO05D008001 9.3e-57 224.2 213 62.0
HanXRQChr04g0094091 Helianthus annuus HOM05D006377 ORTHO05D008001 1.2e-56 223.8 207 64.3
CsaV3_2G004360 Cucumis sativus L. HOM05D006377 ORTHO05D008001 1.6e-56 223.4 193 62.7
Ciclev10002532m.g Citrus clementina HOM05D006377 ORTHO05D008001 2.1e-56 223.0 216 65.7
Haze_04319 Corylus avellana HOM05D006377 ORTHO05D008001 2.7e-56 222.6 206 60.2
Dinv11572 Davidia involucrata HOM05D006377 ORTHO05D008001 2.7e-56 222.6 198 66.7
QL03p023258 Quercus lobata HOM05D006377 ORTHO05D008001 2.7e-56 222.6 206 63.6
Sed0019582 Sechium edule HOM05D006377 ORTHO05D008001 2.7e-56 222.6 184 63.6
MSTRG.3650 Avicennia marina HOM05D006377 ORTHO05D008001 6.1e-56 221.5 208 58.7
Gohir.A11G256100 Gossypium hirsutum HOM05D006377 ORTHO05D008001 6.1e-56 221.5 211 63.0
FAN05G4075 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.0e-55 220.7 205 59.5
RcHm_v2.0_Chr3g0452211 Rosa chinensis HOM05D006377 ORTHO05D008001 1.0e-55 220.7 213 56.8
THA.LOC104805815 Tarenaya hassleriana HOM05D006377 ORTHO05D008001 1.0e-55 220.7 211 59.7
MBI19_g37073_MAGBIO Magnolia biondii HOM05D006377 ORTHO05D008001 1.3e-55 220.3 208 65.4
FvH4_6g03680 Fragaria vesca HOM05D006377 ORTHO05D008001 1.8e-55 219.9 205 59.5
FAN05G1987 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.8e-55 219.9 205 59.5
FAN14G3144 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.8e-55 219.9 205 59.5
ClCG02G016370 Citrullus lanatus HOM05D006377 ORTHO05D008001 2.3e-55 219.5 203 60.6
MD04G1219300 Malus domestica HOM05D006377 ORTHO05D008001 2.3e-55 219.5 225 57.8
QL03p023964 Quercus lobata HOM05D006377 ORTHO05D008001 2.3e-55 219.5 205 64.4
Thecc.05G289700 Theobroma cacao HOM05D006377 ORTHO05D008001 2.3e-55 219.5 212 67.0
Manes.08G127500 Manihot esculenta HOM05D006377 ORTHO05D008001 3.9e-55 218.8 218 65.1
Cfa006472 Carpinus fangiana HOM05D006377 ORTHO05D008001 5.1e-55 218.4 206 58.7
Gohir.D11G265800 Gossypium hirsutum HOM05D006377 ORTHO05D008001 5.1e-55 218.4 211 61.6
SGA_v2.0_scaffold35G13993 Striga asiatica HOM05D006377 ORTHO05D008001 5.1e-55 218.4 205 59.5
TWI36G1766 Tripterygium wilfordii HOM05D006377 ORTHO05D008001 6.7e-55 218.0 204 60.8
Gorai.007G285800 Gossypium raimondii HOM05D006377 ORTHO05D008001 1.1e-54 217.2 211 61.6
Potri.013G035700 Populus trichocarpa HOM05D006377 ORTHO05D008001 9.7e-54 214.2 209 64.6
SalBow5G2979 Salvia bowleyana HOM05D006377 ORTHO05D008001 9.7e-54 214.2 205 62.9
Migut.E01572 Erythranthe guttata HOM05D006377 ORTHO05D008001 1.6e-53 213.4 202 57.4
VMungo0540G1412 Vigna mungo HOM05D006377 ORTHO05D008001 1.6e-53 213.4 215 63.3
PSO210G5336 Papaver somniferum HOM05D006377 ORTHO05D008001 4.8e-53 211.8 208 56.7
Potri.005G049000 Populus trichocarpa HOM05D006377 ORTHO05D008001 2.4e-52 209.5 212 60.8
PSO761G0064 Papaver somniferum HOM05D006377 ORTHO05D008001 3.1e-52 209.1 207 55.1
unitig_0.g1675 Utricularia gibba HOM05D006377 ORTHO05D008001 3.1e-52 209.1 208 56.2
Os08g0323400 Oryza sativa ssp. japonica HOM05D006377 ORTHO05D008001 4.1e-52 208.8 170 68.8
Actinidia30919 Actinidia chinensis HOM05D006377 ORTHO05D008001 1.2e-51 207.2 177 65.0
FAN02G4534 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.5e-51 206.8 150 76.0
Lalb_Chr15g0076921 Lupinus albus HOM05D006377 ORTHO05D008001 1.5e-51 206.8 180 61.7
FAN09G4008 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.6e-51 206.1 198 58.1
Cpa.g.sc264.18 Carica papaya HOM05D006377 ORTHO05D008001 5.9e-51 204.9 114 83.3
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 7.7e-51 204.5 200 58.5
arahy.Tifrunner.gnm1.ann1.VW98FE Arachis hypogaea HOM05D006377 ORTHO05D008001 1.0e-50 204.1 114 82.5
Zm00001eb140200 Zea mays HOM05D006377 ORTHO05D008001 1.0e-50 204.1 182 59.9
Phvul.006G099300 Phaseolus vulgaris HOM05D006377 ORTHO05D008001 2.2e-50 203.0 207 59.9
Lj1g0014721 Lotus japonicus HOM05D006377 ORTHO05D008001 5.0e-50 201.8 192 58.3
Zm00001eb061720 Zea mays HOM05D006377 ORTHO05D008001 8.5e-50 201.1 113 78.8
Medtr7g114590 Medicago truncatula HOM05D006377 ORTHO05D008001 1.1e-49 200.7 205 55.6
Glyma.03G245100 Glycine max HOM05D006377 ORTHO05D008001 1.4e-49 200.3 205 56.1
Atru.chr2.718 Acer truncatum HOM05D006377 ORTHO05D008001 1.9e-49 199.9 114 79.8
AT1G54500 Arabidopsis thaliana HOM05D006377 ORTHO05D008001 1.9e-49 199.9 206 55.8
TPR.G7004 Trifolium pratense HOM05D006377 ORTHO05D008001 1.9e-49 199.9 195 57.4
CDE12G0044 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 4.2e-49 198.7 202 56.4
Ca_09403_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 4.2e-49 198.7 194 57.7
Ca_30164_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 4.2e-49 198.7 194 57.7
Sabra05G0044300 Salix brachista HOM05D006377 ORTHO05D008001 4.2e-49 198.7 205 54.6
Zm00001eb061700 Zea mays HOM05D006377 ORTHO05D008001 4.2e-49 198.7 149 71.1
Zm00001eb061690 Zea mays HOM05D006377 ORTHO05D008001 7.2e-49 198.0 113 77.9
AUR62000968 Chenopodium quinoa HOM05D006377 ORTHO05D008001 9.4e-49 197.6 191 63.4
CARHR055600 Cardamine hirsuta HOM05D006377 ORTHO05D008001 2.7e-48 196.1 205 54.1
Thhalv10023702m.g Eutrema salsugineum HOM05D006377 ORTHO05D008001 6.1e-48 194.9 112 79.5
AL1G64910 Arabidopsis lyrata HOM05D006377 ORTHO05D008001 1.0e-47 194.1 204 54.4
BcaC02g09303 Brassica carinata HOM05D006377 ORTHO05D008001 1.0e-47 194.1 112 79.5
A04p07500 Brassica napus HOM05D006377 ORTHO05D008001 1.0e-47 194.1 112 79.5
C04p41160 Brassica napus HOM05D006377 ORTHO05D008001 1.0e-47 194.1 112 79.5
BolC4t25698H Brassica oleracea HOM05D006377 ORTHO05D008001 1.0e-47 194.1 112 79.5
BraA04t16445Z Brassica rapa HOM05D006377 ORTHO05D008001 1.0e-47 194.1 112 79.5
BcaB02g08603 Brassica carinata HOM05D006377 ORTHO05D008001 1.4e-47 193.7 111 80.2
Carub.0002s0934 Capsella rubella HOM05D006377 ORTHO05D008001 3.0e-47 192.6 211 52.6
Aa31LG2G12300 Aethionema arabicum HOM05D006377 ORTHO05D008001 3.9e-47 192.2 208 54.3
Sabra13G0035000 Salix brachista HOM05D006377 ORTHO05D008001 3.9e-47 192.2 148 74.3
SpUn0001_0720 Schrenkiella parvula HOM05D006377 ORTHO05D008001 5.1e-47 191.8 203 52.2
ATR0796G227 Amborella trichopoda HOM05D006377 ORTHO05D008001 3.7e-45 185.7 196 56.1
Psat5g039080 Pisum sativum HOM05D006377 ORTHO05D008001 6.3e-45 184.9 176 56.8
Zm00001eb061710 Zea mays HOM05D006377 ORTHO05D008001 6.3e-45 184.9 186 60.2
Duzib128G0229 Durio zibethinus HOM05D006377 ORTHO05D008001 6.9e-44 181.4 183 56.8
Zm00001eb061670 Zea mays HOM05D006377 ORTHO05D008001 1.2e-43 180.6 161 56.5
HPP92_001948 Vanilla planifolia HOM05D006377 ORTHO05D008001 1.5e-43 180.3 203 49.8
Manes.09G157000 Manihot esculenta HOM05D006377 ORTHO05D008001 1.4e-41 173.7 182 60.4
AagrBONN_evm.TU.Sc2ySwM_344.5347 Anthoceros agrestis HOM05D006377 ORTHO05D008001 1.9e-41 173.3 112 69.6
AagrBONN_evm.TU.Sc2ySwM_368.50 Anthoceros agrestis HOM05D006377 ORTHO05D008001 1.9e-41 173.3 112 70.5
Pp3c1_22450 Physcomitrium patens HOM05D006377 ORTHO05D008001 7.2e-41 171.4 109 75.2
AUR62004997 Chenopodium quinoa HOM05D006377 ORTHO05D008001 9.4e-41 171.0 173 61.8
SEGI_38373 Sequoiadendron giganteum HOM05D006377 ORTHO05D008001 2.7e-40 169.5 148 57.4
CBR_g55374 Chara braunii HOM05D006377 ORTHO05D008001 1.0e-39 167.5 113 67.3
Pp3c2_13970 Physcomitrium patens HOM05D006377 ORTHO05D008001 1.8e-39 166.8 109 73.4
Hma1.2p1_0332F.1_g127760 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 3.0e-39 166.0 153 66.7
Mapoly0032s0089 Marchantia polymorpha HOM05D006377 ORTHO05D008001 2.0e-38 163.3 112 67.0
SMO137G0026 Selaginella moellendorffii HOM05D006377 ORTHO05D008001 4.4e-38 162.2 108 68.5
DCAR_009137 Daucus carota HOM05D006377 ORTHO05D008001 2.8e-37 159.5 181 55.8
AagrBONN_evm.TU.Sc2ySwM_368.3396 Anthoceros agrestis HOM05D006377 ORTHO05D008001 8.2e-37 157.9 201 43.3
unitig_748.g7013 Utricularia gibba HOM05D000757 ORTHO05D000622 1.8e-36 156.8 118 62.7
Cre07.g315150 Chlamydomonas reinhardtii HOM05D006377 ORTHO05D008001 1.6e-27 127.1 113 49.6
MCO15G508 Micromonas commoda HOM05D006377 ORTHO05D008001 1.6e-27 127.1 109 52.3
Zm00001eb061680 Zea mays HOM05D006377 ORTHO05D008001 5.7e-22 108.6 145 41.4
PRCOL_00004455 Prasinoderma coloniale HOM05D006377 ORTHO05D008001 1.7e-21 107.1 108 48.1
Hma1.2p1_0332F.1_g127740 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 9.5e-17 91.3 89 51.7
Actinidia36920 Actinidia chinensis HOM05D006377 ORTHO05D057244 1.4e-07 60.8 105 38.1


User provided reference genes

Program Settings