Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002810g0010 Nicotiana tabacum HOM05D000810 ORTHO05D001064 9.1e-71 270.0 126 100.0
Nitab4.5_0000751g0070 Nicotiana tabacum HOM05D000810 ORTHO05D001064 2.8e-19 99.0 79 57.0
DCAR_018922 Daucus carota HOM05D000810 ORTHO05D001064 3.6e-19 98.6 101 52.5
Nitab4.5_0000819g0060 Nicotiana tabacum HOM05D000810 ORTHO05D001064 3.6e-19 98.6 79 58.2
DCAR_015634 Daucus carota HOM05D000810 ORTHO05D001064 4.8e-19 98.2 59 74.6
Nitab4.5_0000004g0070 Nicotiana tabacum HOM05D000810 ORTHO05D001064 9.0e-18 94.0 63 73.0
FAN06G1800 Fragaria x ananassa HOM05D000810 ORTHO05D001064 1.5e-17 93.2 60 68.3
Sabra10G0155100 Salix brachista HOM05D000810 ORTHO05D001064 1.5e-17 93.2 63 69.8
FAN06G0319 Fragaria x ananassa HOM05D000810 ORTHO05D001064 2.6e-17 92.4 60 68.3
Actinidia26730 Actinidia chinensis HOM05D000810 ORTHO05D001064 3.8e-16 88.6 63 65.1
arahy.Tifrunner.gnm1.ann1.M6FCCP Arachis hypogaea HOM05D000810 ORTHO05D001064 3.8e-16 88.6 64 62.5
Oeu000810.1 Olea europaea HOM05D000810 ORTHO05D001064 4.9e-16 88.2 62 67.7
Hund26319 Selenicereus undatus HOM05D000810 ORTHO05D003737 3.2e-15 85.5 60 66.7
MBI10_g27925_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D000358 2.1e-14 82.8 62 54.8
MBI13_g31547_MAGBIO Magnolia biondii HOM05D000810 ORTHO05D003737 3.5e-14 82.0 75 54.7
Haze_21978 Corylus avellana HOM05D000810 ORTHO05D003737 4.6e-14 81.6 60 63.3
BcaC01g03573 Brassica carinata HOM05D000810 ORTHO05D003737 6.0e-14 81.3 64 60.9
C05p57820 Brassica napus HOM05D000810 ORTHO05D001064 7.9e-14 80.9 97 43.3
Ah.08g217800 Amaranthus hybridus HOM05D000810 ORTHO05D003737 1.0e-13 80.5 107 43.9
AUR62001335 Chenopodium quinoa HOM05D000810 ORTHO05D003737 1.3e-13 80.1 113 40.7
AUR62025670 Chenopodium quinoa HOM05D000810 ORTHO05D003737 1.7e-13 79.7 113 40.7
Solyc06g005730.2 Solanum lycopersicum HOM05D000810 ORTHO05D001064 1.7e-13 79.7 63 63.5
Sopen06g001710 Solanum pennellii HOM05D000810 ORTHO05D001064 1.7e-13 79.7 63 63.5
Lsat_1_v5_gn_2_112881 Lactuca sativa HOM05D000810 ORTHO05D001064 3.9e-13 78.6 48 66.7
Cpa.g.c47951 Carica papaya HOM05D000810 ORTHO05D001064 6.6e-13 77.8 60 61.7
Sopen06g001720 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-12 76.6 61 60.7
Solyc06g005740.3 Solanum lycopersicum HOM05D000810 ORTHO05D001064 1.9e-12 76.3 63 58.7
Sabra15G0049700 Salix brachista HOM05D000810 ORTHO05D003737 7.4e-12 74.3 60 56.7
Nitab4.5_0005136g0020 Nicotiana tabacum HOM05D000810 ORTHO05D001064 4.0e-10 68.6 91 46.2
Os12g0574400 Oryza sativa ssp. japonica HOM05D000810 ORTHO05D014916 5.3e-10 68.2 116 33.6
Oeu053886.3 Olea europaea HOM05D000810 ORTHO05D001064 1.2e-09 67.0 71 47.9
Cpa.g.sc95.30 Carica papaya HOM05D000810 ORTHO05D001064 2.0e-09 66.2 49 65.3
Rhsim07G0145800 Rhododendron simsii HOM05D004747 ORTHO05D001064 7.6e-09 64.3 79 44.3
Dinv17035 Davidia involucrata HOM05D000810 ORTHO05D001064 9.9e-09 63.9 71 46.5
Dinv42981 Davidia involucrata HOM05D000810 ORTHO05D001064 9.9e-09 63.9 71 46.5
Dinv43118 Davidia involucrata HOM05D000810 ORTHO05D001064 9.9e-09 63.9 71 46.5
Hma1.2p1_0757F.1_g213330 Hydrangea macrophylla HOM05D000810 ORTHO05D001064 1.3e-08 63.5 70 45.7
Actinidia33777 Actinidia chinensis HOM05D000810 ORTHO05D001064 1.7e-08 63.2 71 42.3
Dinv34272 Davidia involucrata HOM05D000810 ORTHO05D001064 2.9e-08 62.4 70 44.3
BcaNung06833 Brassica carinata HOM05D000810 ORTHO05D001064 4.9e-08 61.6 51 52.9
VMungo0251G0704 Vigna mungo HOM05D000867 ORTHO05D000864 4.9e-08 61.6 133 23.3
Gohir.A03G044800 Gossypium hirsutum HOM05D000810 ORTHO05D001064 6.4e-08 61.2 71 40.8
Sabra09G0024900 Salix brachista HOM05D000810 ORTHO05D001064 6.4e-08 61.2 72 40.3
DCAR_007433 Daucus carota HOM05D000810 ORTHO05D001064 1.1e-07 60.5 72 43.1
Atru.chr1.2646 Acer truncatum HOM05D000810 ORTHO05D003737 1.4e-07 60.1 126 31.7
HanXRQChr05g0135201 Helianthus annuus HOM05D000810 ORTHO05D001064 1.4e-07 60.1 72 41.7
Medtr2g097670 Medicago truncatula HOM05D000810 ORTHO05D001064 1.4e-07 60.1 71 47.9
ECA236G0109 Erigeron canadensis HOM05D000810 ORTHO05D001064 1.9e-07 59.7 71 43.7
Os05g0327100 Oryza sativa ssp. japonica HOM05D000810 ORTHO05D001064 1.9e-07 59.7 68 38.2
Atru.chr3.3963 Acer truncatum HOM05D000810 ORTHO05D001064 2.4e-07 59.3 71 39.4
Phvul.002G208100 Phaseolus vulgaris HOM05D000867 ORTHO05D000864 3.2e-07 58.9 133 23.3
FvH4_3g36870 Fragaria vesca HOM05D000810 ORTHO05D001064 4.2e-07 58.5 71 42.3
FAN11G0426 Fragaria x ananassa HOM05D000810 ORTHO05D001064 4.2e-07 58.5 71 42.3
FAN16G2512 Fragaria x ananassa HOM05D000810 ORTHO05D001064 4.2e-07 58.5 72 43.1
FAN21G2101 Fragaria x ananassa HOM05D000810 ORTHO05D001064 4.2e-07 58.5 71 42.3
FAN25G0317 Fragaria x ananassa HOM05D000810 ORTHO05D001064 4.2e-07 58.5 71 42.3
Medtr4g064670 Medicago truncatula HOM05D000810 ORTHO05D001064 4.2e-07 58.5 71 46.5
RcHm_v2.0_Chr5g0066091 Rosa chinensis HOM05D000810 ORTHO05D001064 4.2e-07 58.5 71 42.3
Ca_20621_v3 Cicer arietinum L. HOM05D000810 ORTHO05D001064 5.5e-07 58.2 70 47.1
COL.COLO4_18564 Corchorus olitorius HOM05D000810 ORTHO05D001064 5.5e-07 58.2 71 39.4
DCAR_005952 Daucus carota HOM05D000810 ORTHO05D001064 5.5e-07 58.2 68 47.1
Lj2C1068T5 Lonicera japonica HOM05D000810 ORTHO05D001064 5.5e-07 58.2 70 41.4
Lalb_Chr04g0251081 Lupinus albus HOM05D000810 ORTHO05D001064 7.1e-07 57.8 71 43.7
Nn2g11178 Nelumbo nucifera HOM05D000810 ORTHO05D001064 7.1e-07 57.8 61 47.5
TPR.G5638 Trifolium pratense HOM05D000810 ORTHO05D001064 7.1e-07 57.8 101 36.6
Phvul.011G062200 Phaseolus vulgaris HOM05D000810 ORTHO05D001064 9.3e-07 57.4 70 47.1
CiPaw.05G036200 Carya illinoinensis HOM05D000867 ORTHO05D000864 1.6e-06 56.6 117 26.5
HanXRQChr06g0179001 Helianthus annuus HOM05D000810 ORTHO05D001064 1.6e-06 56.6 70 40.0
GSVIVG01024918001 Vitis vinifera HOM05D000810 ORTHO05D001064 1.6e-06 56.6 67 43.3
MD11G1096100 Malus domestica HOM05D000810 ORTHO05D001064 2.7e-06 55.8 65 44.6
Duzib150G0564 Durio zibethinus HOM05D000810 ORTHO05D001064 3.5e-06 55.5 71 38.0
HanXRQChr08g0221001 Helianthus annuus HOM05D000810 ORTHO05D001064 4.6e-06 55.1 72 38.9
Lsat_1_v5_gn_5_168961 Lactuca sativa HOM05D000810 ORTHO05D001064 4.6e-06 55.1 37 64.9
Manes.01G170200 Manihot esculenta HOM05D000810 ORTHO05D001064 4.6e-06 55.1 67 41.8
Manes.18G068100 Manihot esculenta HOM05D000867 ORTHO05D000864 4.6e-06 55.1 114 27.2
SEGI_41456 Sequoiadendron giganteum HOM05D000867 ORTHO05D000864 4.6e-06 55.1 132 22.0
Atru.chr12.411 Acer truncatum HOM05D000810 ORTHO05D001064 6.0e-06 54.7 98 31.6
Manes.02G153200 Manihot esculenta HOM05D000867 ORTHO05D000864 6.0e-06 54.7 117 27.4
Oeu004173.2 Olea europaea HOM05D000810 ORTHO05D001064 6.0e-06 54.7 37 64.9
unitig_746.g26721 Utricularia gibba HOM05D000810 ORTHO05D001064 6.0e-06 54.7 34 67.6
VMungo1309G2407 Vigna mungo HOM05D000867 ORTHO05D000864 6.0e-06 54.7 131 24.4
Haze_24147 Corylus avellana HOM05D000810 ORTHO05D001064 7.9e-06 54.3 89 36.0
Lalb_Chr01g0003501 Lupinus albus HOM05D000810 ORTHO05D001064 7.9e-06 54.3 67 43.3
Solyc06g005670.4 Solanum lycopersicum HOM05D000810 ORTHO05D001064 7.9e-06 54.3 33 72.7
Sopen06g001650 Solanum pennellii HOM05D000810 ORTHO05D001064 7.9e-06 54.3 33 72.7
TPR.G23618 Trifolium pratense HOM05D000810 ORTHO05D001064 7.9e-06 54.3 70 45.7


User provided reference genes

Program Settings