Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002785g0040 Nicotiana tabacum HOM05D000135 ORTHO05D005042 9.8e-75 283.5 154 100.0
Nitab4.5_0000356g0070 Nicotiana tabacum HOM05D000135 ORTHO05D005042 5.8e-43 177.9 153 66.7
Peaxi162Scf00732g00004 Petunia axillaris HOM05D000135 ORTHO05D005042 3.3e-30 135.6 150 56.0
Nitab4.5_0002139g0010 Nicotiana tabacum HOM05D000135 ORTHO05D005042 5.4e-25 118.2 93 63.4
CAN.G751.3 Capsicum annuum HOM05D000135 ORTHO05D005042 1.6e-24 116.7 93 64.5
Lj2C55T5 Lonicera japonica HOM05D000135 ORTHO05D005042 1.6e-24 116.7 94 62.8
Nitab4.5_0003037g0110 Nicotiana tabacum HOM05D000135 ORTHO05D005042 2.7e-24 115.9 93 63.4
Sopen10g027230 Solanum pennellii HOM05D000135 ORTHO05D005042 6.0e-24 114.8 93 63.4
Peaxi162Scf00374g00053 Petunia axillaris HOM05D000135 ORTHO05D005042 1.5e-22 110.2 97 61.9
Migut.J00006 Erythranthe guttata HOM05D000135 ORTHO05D005042 1.9e-22 109.8 149 45.6
PGSC0003DMG400027692 Solanum tuberosum HOM05D000135 ORTHO05D005042 1.6e-21 106.7 93 59.1
Dinv16930 Davidia involucrata HOM05D000135 ORTHO05D005042 2.1e-21 106.3 98 59.2
Sp7g18850 Schrenkiella parvula HOM05D000135 ORTHO05D005042 3.6e-21 105.5 94 56.4
CsaV3_3G032970 Cucumis sativus L. HOM05D000135 ORTHO05D005042 4.8e-21 105.1 95 55.8
Rhsim05G0234300 Rhododendron simsii HOM05D000135 ORTHO05D005042 8.1e-21 104.4 94 55.3
Atru.chr8.51 Acer truncatum HOM05D000135 ORTHO05D005042 2.4e-20 102.8 94 59.6
Cpa.g.sc60.60 Carica papaya HOM05D000135 ORTHO05D005042 3.1e-20 102.4 94 60.6
MELO3C009094.2 Cucumis melo HOM05D000135 ORTHO05D005042 5.3e-20 101.7 94 55.3
Dinv25375 Davidia involucrata HOM05D000135 ORTHO05D005042 9.0e-20 100.9 94 57.4
Hma1.2p1_0537F.1_g174170 Hydrangea macrophylla HOM05D000135 ORTHO05D005042 1.5e-19 100.1 109 51.4
DCAR_023958 Daucus carota HOM05D000135 ORTHO05D005042 2.0e-19 99.8 94 53.2
CSS0001509 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D005042 2.6e-19 99.4 98 53.1
Hma1.2p1_0174F.1_g076570 Hydrangea macrophylla HOM05D000135 ORTHO05D005042 2.6e-19 99.4 116 50.0
BcaNung05681 Brassica carinata HOM05D000135 ORTHO05D005042 3.4e-19 99.0 94 52.1
THA.LOC104812148 Tarenaya hassleriana HOM05D000135 ORTHO05D005042 4.4e-19 98.6 94 52.1
AL7G33370 Arabidopsis lyrata HOM05D000135 ORTHO05D005042 5.8e-19 98.2 94 51.1
Carub.0007s2067 Capsella rubella HOM05D000135 ORTHO05D005042 5.8e-19 98.2 94 55.3
HanXRQChr16g0512251 Helianthus annuus HOM05D000135 ORTHO05D005042 5.8e-19 98.2 94 52.1
unitig_8.g4470 Utricularia gibba HOM05D000135 ORTHO05D005042 5.8e-19 98.2 86 52.3
Potri.006G112500 Populus trichocarpa HOM05D000135 ORTHO05D005042 9.9e-19 97.4 96 51.0
CSS0037777 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D005042 1.3e-18 97.1 98 52.0
Sabra06G0087600 Salix brachista HOM05D009827 ORTHO05D011093 1.3e-18 97.1 97 52.6
Thecc.04G147000 Theobroma cacao HOM05D000135 ORTHO05D005042 1.3e-18 97.1 98 52.0
ClCG10G022840 Citrullus lanatus HOM05D000135 ORTHO05D005042 1.7e-18 96.7 94 52.1
Cfa016992 Carpinus fangiana HOM05D000135 ORTHO05D005042 2.2e-18 96.3 94 48.9
Sed0006658 Sechium edule HOM05D000135 ORTHO05D005042 2.9e-18 95.9 95 49.5
AT4G20780 Arabidopsis thaliana HOM05D000135 ORTHO05D005042 3.8e-18 95.5 94 52.1
HanXRQChr15g0464591 Helianthus annuus HOM05D000135 ORTHO05D005042 3.8e-18 95.5 96 47.9
Oeu026923.1 Olea europaea HOM05D000135 ORTHO05D005042 3.8e-18 95.5 94 53.2
unitig_27.g24898 Utricularia gibba HOM05D000135 ORTHO05D005042 3.8e-18 95.5 94 52.1
Eucgr.K01308 Eucalyptus grandis HOM05D000135 ORTHO05D005042 4.9e-18 95.1 94 48.9
Manes.09G120700 Manihot esculenta HOM05D000135 ORTHO05D005042 4.9e-18 95.1 94 51.1
Potri.016G142000 Populus trichocarpa HOM05D000135 ORTHO05D005042 4.9e-18 95.1 97 51.5
MSTRG.5477 Avicennia marina HOM05D000135 ORTHO05D005042 6.4e-18 94.7 94 54.3
BcaNung04153 Brassica carinata HOM05D000135 ORTHO05D005042 6.4e-18 94.7 94 54.3
BraA01t01161Z Brassica rapa HOM05D000135 ORTHO05D005042 6.4e-18 94.7 94 52.1
BcaB03g11676 Brassica carinata HOM05D000135 ORTHO05D005042 8.4e-18 94.4 123 43.1
Ciclev10012776m.g Citrus clementina HOM05D000135 ORTHO05D005042 1.9e-17 93.2 96 54.2
BcaC01g00677 Brassica carinata HOM05D000135 ORTHO05D005042 2.4e-17 92.8 125 43.2
C03p83000 Brassica napus HOM05D000135 ORTHO05D005042 2.4e-17 92.8 125 43.2
BolC3t20581H Brassica oleracea HOM05D000135 ORTHO05D005042 2.4e-17 92.8 125 43.2
Haze_21213 Corylus avellana HOM05D000135 ORTHO05D005042 2.4e-17 92.8 94 48.9
Nn2g10212 Nelumbo nucifera HOM05D000135 ORTHO05D005042 2.4e-17 92.8 104 47.1
HanXRQChr10g0286731 Helianthus annuus HOM05D000135 ORTHO05D005042 3.2e-17 92.4 99 50.5
PSO339G4947 Papaver somniferum HOM05D000135 ORTHO05D005042 3.2e-17 92.4 94 55.3
PSO384G3298 Papaver somniferum HOM05D000135 ORTHO05D005042 3.2e-17 92.4 94 55.3
unitig_578.g15919 Utricularia gibba HOM05D000135 ORTHO05D005042 4.2e-17 92.0 94 53.2
BcaNung05060 Brassica carinata HOM05D000135 ORTHO05D005042 5.4e-17 91.7 95 53.7
A03p52460 Brassica napus HOM05D000135 ORTHO05D005042 5.4e-17 91.7 95 53.7
C07p50910 Brassica napus HOM05D000135 ORTHO05D005042 5.4e-17 91.7 95 53.7
BolC7t45591H Brassica oleracea HOM05D000135 ORTHO05D005042 5.4e-17 91.7 95 53.7
Lsat_1_v5_gn_5_153780 Lactuca sativa HOM05D000135 ORTHO05D005042 5.4e-17 91.7 94 47.9
Manes.08G167400 Manihot esculenta HOM05D000135 ORTHO05D005042 5.4e-17 91.7 94 50.0
A08p14920 Brassica napus HOM05D000135 ORTHO05D005042 7.1e-17 91.3 125 43.2
BraA08t33474Z Brassica rapa HOM05D000135 ORTHO05D005042 7.1e-17 91.3 125 43.2
Cc06_g00140 Coffea canephora HOM05D000135 ORTHO05D005042 7.1e-17 91.3 101 49.5
Duzib151G0137 Durio zibethinus HOM05D000135 ORTHO05D005042 7.1e-17 91.3 149 38.9
MBI03_g14782_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D005042 7.1e-17 91.3 94 51.1
BraA03t14324Z Brassica rapa HOM05D000135 ORTHO05D005042 1.2e-16 90.5 95 52.6
VMungo1383G3572 Vigna mungo HOM05D000135 ORTHO05D005042 1.2e-16 90.5 94 50.0
Gorai.005G125300 Gossypium raimondii HOM05D000135 ORTHO05D005042 1.6e-16 90.1 94 48.9
PGR031G0072 Punica granatum HOM05D000135 ORTHO05D005042 1.6e-16 90.1 94 51.1
Sabra04G0158200 Salix brachista HOM05D000135 ORTHO05D005042 1.6e-16 90.1 97 49.5
Aa31LG9G8730 Aethionema arabicum HOM05D000135 ORTHO05D005042 2.1e-16 89.7 96 50.0
A01p12190 Brassica napus HOM05D000135 ORTHO05D005042 2.7e-16 89.4 94 50.0
Phvul.008G078500 Phaseolus vulgaris HOM05D000135 ORTHO05D005042 2.7e-16 89.4 94 50.0
TPR.G24286 Trifolium pratense HOM05D000135 ORTHO05D005042 2.7e-16 89.4 94 51.1
Aa31LG6G2870 Aethionema arabicum HOM05D000135 ORTHO05D005042 3.5e-16 89.0 96 50.0
Lsat_1_v5_gn_8_108500 Lactuca sativa HOM05D000135 ORTHO05D005042 4.6e-16 88.6 94 47.9
Oeu027188.1 Olea europaea HOM05D000135 ORTHO05D005042 4.6e-16 88.6 94 48.9
BcaC06g34551 Brassica carinata HOM05D000135 ORTHO05D005042 6.0e-16 88.2 126 42.9
C07p27250 Brassica napus HOM05D000135 ORTHO05D005042 6.0e-16 88.2 126 42.9
BolC7t43253H Brassica oleracea HOM05D000135 ORTHO05D005042 6.0e-16 88.2 126 42.9
PGR004G1277 Punica granatum HOM05D000135 ORTHO05D005042 6.0e-16 88.2 93 51.6
BraA06t27589Z Brassica rapa HOM05D000135 ORTHO05D005042 7.9e-16 87.8 126 42.9
Thhalv10001042m.g Eutrema salsugineum HOM05D000135 ORTHO05D005042 7.9e-16 87.8 93 52.7
HanXRQChr01g0000351 Helianthus annuus HOM05D000135 ORTHO05D005042 7.9e-16 87.8 126 38.9
QL07p031451 Quercus lobata HOM05D000135 ORTHO05D005042 7.9e-16 87.8 99 47.5
BcaB07g30522 Brassica carinata HOM05D000135 ORTHO05D005042 1.0e-15 87.4 93 51.6
A06p47180 Brassica napus HOM05D000135 ORTHO05D005042 1.0e-15 87.4 126 42.9
Lsat_1_v5_gn_9_39941 Lactuca sativa HOM05D000135 ORTHO05D005042 1.0e-15 87.4 103 43.7
Lj1g0023690 Lotus japonicus HOM05D000135 ORTHO05D005042 1.0e-15 87.4 94 45.7
Thhalv10026325m.g Eutrema salsugineum HOM05D000135 ORTHO05D005042 1.3e-15 87.0 94 47.9
BcaC06g31614 Brassica carinata HOM05D000135 ORTHO05D005042 1.7e-15 86.7 94 50.0
CANSAT21G0108 Cannabis sativa HOM05D000135 ORTHO05D005042 2.3e-15 86.3 98 44.9
Nn1g03907 Nelumbo nucifera HOM05D000135 ORTHO05D005042 2.3e-15 86.3 128 41.4
FAN05G4538 Fragaria x ananassa HOM05D000135 ORTHO05D005042 3.0e-15 85.9 104 43.3
Glyma.09G270900 Glycine max HOM05D000135 ORTHO05D005042 3.0e-15 85.9 94 47.9
CiPaw.09G225400 Carya illinoinensis HOM05D000135 ORTHO05D005042 3.9e-15 85.5 108 43.5
ECA172G0002 Erigeron canadensis HOM05D000402 ORTHO05D000263 3.9e-15 85.5 98 42.9
ECA240G2333 Erigeron canadensis HOM05D000135 ORTHO05D005042 3.9e-15 85.5 98 42.9
Gohir.A02G092300 Gossypium hirsutum HOM05D000135 ORTHO05D005042 3.9e-15 85.5 94 46.8
MBI15_g22002_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D005042 3.9e-15 85.5 105 47.6
Zm00001eb330780 Zea mays HOM05D000135 ORTHO05D005042 3.9e-15 85.5 95 50.5
BcaC09g51311 Brassica carinata HOM05D000135 ORTHO05D005042 5.1e-15 85.1 94 48.9
BolC1t01407H Brassica oleracea HOM05D000135 ORTHO05D005042 5.1e-15 85.1 94 48.9
Gohir.D02G110200 Gossypium hirsutum HOM05D000135 ORTHO05D005042 5.1e-15 85.1 94 48.9
Zm00001eb111620 Zea mays HOM05D000135 ORTHO05D005042 5.1e-15 85.1 95 50.5
CARHR178620 Cardamine hirsuta HOM05D000135 ORTHO05D005042 8.7e-15 84.3 93 44.1
Psat3g116960 Pisum sativum HOM05D000135 ORTHO05D005042 8.7e-15 84.3 95 48.4
QL07p030597 Quercus lobata HOM05D000135 ORTHO05D005042 8.7e-15 84.3 99 45.5
TAR633G0043 Trochodendron aralioides HOM05D000135 ORTHO05D005042 8.7e-15 84.3 93 47.3
AT5G44460 Arabidopsis thaliana HOM05D000135 ORTHO05D005042 1.5e-14 83.6 93 48.4
TPR.G22098 Trifolium pratense HOM05D000135 ORTHO05D005042 1.5e-14 83.6 90 51.1
BcaC03g16665 Brassica carinata HOM05D000135 ORTHO05D005042 1.9e-14 83.2 93 48.4
A02p28430 Brassica napus HOM05D000135 ORTHO05D005042 1.9e-14 83.2 93 48.4
C02p45040 Brassica napus HOM05D000135 ORTHO05D005042 1.9e-14 83.2 93 48.4
BolC2t10538H Brassica oleracea HOM05D000135 ORTHO05D005042 1.9e-14 83.2 93 48.4
BraA02t07878Z Brassica rapa HOM05D000135 ORTHO05D005042 1.9e-14 83.2 93 48.4
Ca_07800_v3 Cicer arietinum L. HOM05D000135 ORTHO05D005042 2.5e-14 82.8 94 48.9
Medtr7g074240 Medicago truncatula HOM05D000135 ORTHO05D005042 2.5e-14 82.8 94 45.7
Nn6g33928 Nelumbo nucifera HOM05D000058 ORTHO05D005042 2.5e-14 82.8 94 47.9
Prupe.6G298900 Prunus persica HOM05D000135 ORTHO05D005042 2.5e-14 82.8 98 44.9
C01p14510 Brassica napus HOM05D000135 ORTHO05D005042 3.3e-14 82.4 94 47.9
CAN.G683.3 Capsicum annuum HOM05D024055 ORTHO05D005042 3.3e-14 82.4 63 63.5
Nn5g26764 Nelumbo nucifera HOM05D000135 ORTHO05D005042 3.3e-14 82.4 96 49.0
RcHm_v2.0_Chr3g0459681 Rosa chinensis HOM05D000135 ORTHO05D005042 3.3e-14 82.4 103 42.7
AL8G15390 Arabidopsis lyrata HOM05D000135 ORTHO05D005042 4.3e-14 82.0 93 47.3
CARHR227320 Cardamine hirsuta HOM05D000135 ORTHO05D005042 4.3e-14 82.0 94 44.7
Carub.0008s0403 Capsella rubella HOM05D000135 ORTHO05D005042 5.6e-14 81.6 93 47.3
Lj3P939T25 Lonicera japonica HOM05D000135 ORTHO05D005042 5.6e-14 81.6 86 54.7
Sed0027205 Sechium edule HOM05D000135 ORTHO05D005042 5.6e-14 81.6 94 46.8
GSVIVG01029852001 Vitis vinifera HOM05D000135 ORTHO05D005042 9.6e-14 80.9 107 45.8
MD04G1178900 Malus domestica HOM05D000135 ORTHO05D005042 1.3e-13 80.5 106 40.6
Os03g0331700 Oryza sativa ssp. japonica HOM05D000135 ORTHO05D005042 1.3e-13 80.5 94 47.9
Sc20g0007330 Simmondsia chinensis HOM05D000135 ORTHO05D005042 1.3e-13 80.5 63 57.1
Sc20g0007540 Simmondsia chinensis HOM05D000135 ORTHO05D005042 1.3e-13 80.5 63 57.1
FAN09G2307 Fragaria x ananassa HOM05D000135 ORTHO05D005042 1.6e-13 80.1 104 40.4
AUR62006461 Chenopodium quinoa HOM05D000135 ORTHO05D005042 2.1e-13 79.7 102 46.1
FAN02G2553 Fragaria x ananassa HOM05D000135 ORTHO05D005042 2.1e-13 79.7 104 41.3
FvH4_6g09300 Fragaria vesca HOM05D000135 ORTHO05D005042 2.8e-13 79.3 104 40.4
BcaC06g34552 Brassica carinata HOM05D000135 ORTHO05D005042 4.8e-13 78.6 88 51.1
FAN14G5935 Fragaria x ananassa HOM05D000135 ORTHO05D005042 6.2e-13 78.2 104 39.4
SGA_v2.0_scaffold85G26581 Striga asiatica HOM05D000135 ORTHO05D005042 1.1e-12 77.4 94 46.8
Os08g0144100 Oryza sativa ssp. japonica HOM05D000135 ORTHO05D005042 1.8e-12 76.6 65 60.0
Os07g0681400 Oryza sativa ssp. japonica HOM05D000135 ORTHO05D005042 2.4e-12 76.3 65 58.5
Zm00001eb015800 Zea mays HOM05D000135 ORTHO05D005042 2.4e-12 76.3 94 46.8
MD07G1157000 Malus domestica HOM05D000135 ORTHO05D005042 6.9e-12 74.7 94 41.5
MD12G1194200 Malus domestica HOM05D000135 ORTHO05D005042 1.2e-11 73.9 105 39.0
HPP92_015440 Vanilla planifolia HOM05D000135 ORTHO05D005042 1.5e-11 73.6 94 45.7
ATR1127G073 Amborella trichopoda HOM05D000135 ORTHO05D005042 4.5e-11 72.0 96 45.8
AUR62029817 Chenopodium quinoa HOM05D000135 ORTHO05D005042 4.5e-11 72.0 102 43.1
Ah.06g184220 Amaranthus hybridus HOM05D000135 ORTHO05D005042 7.6e-11 71.2 101 41.6
Zm00001eb395260 Zea mays HOM05D000135 ORTHO05D005042 3.8e-10 68.9 97 41.2
EL10Ac7g17146 Beta vulgaris HOM05D000135 ORTHO05D005042 4.9e-10 68.6 68 50.0
SEGI_33599 Sequoiadendron giganteum HOM05D000135 ORTHO05D005042 4.9e-10 68.6 123 38.2
ECA247G0436 Erigeron canadensis HOM05D000135 ORTHO05D005042 6.4e-10 68.2 77 42.9
Solyc10g074740.2 Solanum lycopersicum HOM05D000135 ORTHO05D005042 6.4e-10 68.2 60 60.0
HPP92_007549 Vanilla planifolia HOM05D000135 ORTHO05D005042 6.4e-10 68.2 93 43.0
HPP92_028106 Vanilla planifolia HOM05D000135 ORTHO05D005042 6.4e-10 68.2 93 43.0
Eucgr.A00852 Eucalyptus grandis HOM05D000135 ORTHO05D005042 2.4e-09 66.2 135 37.0
Lalb_Chr13g0290331 Lupinus albus HOM05D000135 ORTHO05D005042 4.6e-08 62.0 71 40.8
HPP92_019042 Vanilla planifolia HOM05D000135 ORTHO05D005042 2.5e-06 56.2 94 34.0


User provided reference genes

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